ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474687.1| Oryza sativa (japonica cultivar-group), predic... 84 5e-13
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
3emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 84 5e-13
4ref|XM_474690.1| Oryza sativa (japonica cultivar-group), predic... 70 8e-09
5gb|AY109644.1| Zea mays CL12102_-1 mRNA sequence 70 8e-09
6emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
7emb|AL731580.3|OSJN00227 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
8dbj|AK100045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9ref|XM_474691.1| Oryza sativa (japonica cultivar-group), predic... 54 5e-04
10dbj|AK102846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
11dbj|AK064021.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
13dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.45
15gb|AC121285.7| Mus musculus chromosome 3, clone RP23-437I18, com... 44 0.45
16emb|AJ414049.1|SMA414049 Stenotrophomonas maltophilia putative m... 44 0.45
17ref|XM_806041.1| Trypanosoma cruzi strain CL Brener urocanate hy... 42 1.8
18dbj|AB232922.1| Oryzias latipes hox gene cluster, complete cds, ... 42 1.8
19dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, ... 42 1.8
20gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.8
21gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence 42 1.8
22gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 42 1.8
23gb|AY602221.1| Petromyzon marinus bone morphogenetic protein 24B... 40 7.0
24gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.0
25ref|XM_981350.1| PREDICTED: Mus musculus similar to macrophage a... 40 7.0
26ref|XM_986052.1| PREDICTED: Mus musculus similar to macrophage a... 40 7.0
27gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 7.0
28gb|AC113270.8| Mus musculus chromosome 7, clone RP23-375O10, com... 40 7.0
29gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete seq... 40 7.0
30gb|BC111039.1| Mus musculus similar to macrophage activation 2, ... 40 7.0
31gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.0
32ref|XM_966393.1| PREDICTED: Tribolium castaneum similar to CG818... 40 7.0
33emb|AL731658.20| Mouse DNA sequence from clone RP23-329P17 on ch... 40 7.0
34gb|AC090799.2| Homo sapiens chromosome 11, clone RP11-242N18, co... 40 7.0
35ref|NM_001039647.1| Mus musculus similar to macrophage activatio... 40 7.0
36gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.0
37ref|XM_623151.1| PREDICTED: Apis mellifera similar to translatio... 40 7.0
38ref|XM_395299.2| PREDICTED: Apis mellifera similar to translatio... 40 7.0
39gb|AC114735.4| Homo sapiens BAC clone CTD-2034L19 from 4, comple... 40 7.0
40emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 40 7.0 
>ref|XM_474687.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1524

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 129/158 (81%)
 Strand = Plus / Minus

                                                                        
Query: 103  ggcttgaacatgggtggccctctcactttggtagcctgctcgaaagcatatgccatctcg 162
            ||||||||||| || |||  ||||||||||||| |||||||||| ||||| |||||||| 
Sbjct: 1520 ggcttgaacattggaggcattctcactttggtaacctgctcgaaggcataagccatctca 1461

                                                                        
Query: 163  atcagcctcggttcgtatccctgcagcccaccaaagcatatcccaaaaggcacacccttc 222
            || |||||||| ||||| |||| ||  ||||| ||||| |  ||||| || || || |||
Sbjct: 1460 attagcctcggctcgtaccccttcaatccaccgaagcagacaccaaaggggactcctttc 1401

                                                  
Query: 223  tcgttgtacccagctggtacaacgatgccggggtggcc 260
            |||| |||||| || || ||||| | ||||||| ||||
Sbjct: 1400 tcgtcgtaccctgccggcacaaccacgccggggaggcc 1363
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 129/158 (81%)
 Strand = Plus / Minus

                                                                           
Query: 103     ggcttgaacatgggtggccctctcactttggtagcctgctcgaaagcatatgccatctcg 162
               ||||||||||| || |||  ||||||||||||| |||||||||| ||||| |||||||| 
Sbjct: 5614449 ggcttgaacattggaggcattctcactttggtaacctgctcgaaggcataagccatctca 5614390

                                                                           
Query: 163     atcagcctcggttcgtatccctgcagcccaccaaagcatatcccaaaaggcacacccttc 222
               || |||||||| ||||| |||| ||  ||||| ||||| |  ||||| || || || |||
Sbjct: 5614389 attagcctcggctcgtaccccttcaatccaccgaagcagacaccaaaggggactcctttc 5614330

                                                     
Query: 223     tcgttgtacccagctggtacaacgatgccggggtggcc 260
               |||| |||||| || || ||||| | ||||||| ||||
Sbjct: 5614329 tcgtcgtaccctgccggcacaaccacgccggggaggcc 5614292



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                           
Query: 127     actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
               ||||||||||| ||||| |||||||| ||||| || |||||||||||||| || |||| |
Sbjct: 5654007 actttggtagcttgctcaaaagcataagccatttcaatcagcctcggttcatagcccttc 5653948

                                      
Query: 187     agcccaccaaagcatatcccaaa 209
               | |||||| ||||| || |||||
Sbjct: 5653947 aacccaccgaagcagataccaaa 5653925



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                           
Query: 127     actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
               ||||||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||| |
Sbjct: 5747223 actttggtagcttgctcaaaagcataggccatttcgataagcctcggctcgtagcccttc 5747164

                                                                           
Query: 187     agcccaccaaagcatatcccaaaaggcacacccttctcgttgtacccagctggtacaacg 246
               |  ||||| ||||| ||  |||| ||||| ||||  | ||  ||||||||||||||| ||
Sbjct: 5747163 aatccaccgaagcagatagcaaatggcactccctgattgtcatacccagctggtacagcg 5747104

                 
Query: 247     at 248
               ||
Sbjct: 5747103 at 5747102



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 462     aggatgtgctttgttgaaagctatgatgtctgcaagagaa 501
               ||||||||| |||||||| |||||||  ||||||||||||
Sbjct: 5746656 aggatgtgcattgttgaatgctatgacatctgcaagagaa 5746617



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                           
Query: 130     ttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgcagc 189
               |||||||| ||||| || ||||| |||||||| || |||||||| || || |||| ||  
Sbjct: 5640279 ttggtagcttgctcaaatgcataagccatctcaattagcctcggctcatagcccttcaat 5640220

                          
Query: 190     ccaccaaagca 200
               |||||||||||
Sbjct: 5640219 ccaccaaagca 5640209



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                           
Query: 127     actttggtagcctgctcgaaagcatatgccatctcgatcagcct 170
               ||||||||||| |||||  ||||||| ||||| || ||||||||
Sbjct: 5696555 actttggtagcttgctcataagcataggccatttcaatcagcct 5696512
to top
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 129/158 (81%)
 Strand = Plus / Minus

                                                                         
Query: 103   ggcttgaacatgggtggccctctcactttggtagcctgctcgaaagcatatgccatctcg 162
             ||||||||||| || |||  ||||||||||||| |||||||||| ||||| |||||||| 
Sbjct: 71656 ggcttgaacattggaggcattctcactttggtaacctgctcgaaggcataagccatctca 71597

                                                                         
Query: 163   atcagcctcggttcgtatccctgcagcccaccaaagcatatcccaaaaggcacacccttc 222
             || |||||||| ||||| |||| ||  ||||| ||||| |  ||||| || || || |||
Sbjct: 71596 attagcctcggctcgtaccccttcaatccaccgaagcagacaccaaaggggactcctttc 71537

                                                   
Query: 223   tcgttgtacccagctggtacaacgatgccggggtggcc 260
             |||| |||||| || || ||||| | ||||||| ||||
Sbjct: 71536 tcgtcgtaccctgccggcacaaccacgccggggaggcc 71499



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                          
Query: 127    actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
              ||||||||||| ||||| |||||||| ||||| || |||||||||||||| || |||| |
Sbjct: 111214 actttggtagcttgctcaaaagcataagccatttcaatcagcctcggttcatagcccttc 111155

                                     
Query: 187    agcccaccaaagcatatcccaaa 209
              | |||||| ||||| || |||||
Sbjct: 111154 aacccaccgaagcagataccaaa 111132



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 130   ttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgcagc 189
             |||||||| ||||| || ||||| |||||||| || |||||||| || || |||| ||  
Sbjct: 97486 ttggtagcttgctcaaatgcataagccatctcaattagcctcggctcatagcccttcaat 97427

                        
Query: 190   ccaccaaagca 200
             |||||||||||
Sbjct: 97426 ccaccaaagca 97416



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 127    actttggtagcctgctcgaaagcatatgccatctcgatcagcct 170
              ||||||||||| |||||  ||||||| ||||| || ||||||||
Sbjct: 153762 actttggtagcttgctcataagcataggccatttcaatcagcct 153719
to top
>ref|XM_474690.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 127  actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
            ||||||||||| ||||| |||||||| ||||| || |||||||||||||| || |||| |
Sbjct: 1508 actttggtagcttgctcaaaagcataagccatttcaatcagcctcggttcatagcccttc 1449

                                   
Query: 187  agcccaccaaagcatatcccaaa 209
            | |||||| ||||| || |||||
Sbjct: 1448 aacccaccgaagcagataccaaa 1426
to top
>gb|AY109644.1| Zea mays CL12102_-1 mRNA sequence
          Length = 660

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                       
Query: 127 actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
           ||||| ||||| |||||||| ||||| || ||||| |||| |||||| ||||| ||||| 
Sbjct: 340 actttcgtagcttgctcgaacgcataagcgatctcaatcancctcggctcgtagccctgg 399

                             
Query: 187 agcccaccaaagcatatc 204
           |||||||| |||||||||
Sbjct: 400 agcccaccgaagcatatc 417



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 295 ggcgcgacgatcgcgtcgagttggtgttccttcatcagcttctccagccc 344
           ||||| |||||||| || ||  || |||||||||||||||||||||||||
Sbjct: 508 ggcgccacgatcgcatccaggcggcgttccttcatcagcttctccagccc 557
to top
>emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12,
             complete sequence
          Length = 164425

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                         
Query: 127   actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
             ||||||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||| |
Sbjct: 42209 actttggtagcttgctcaaaagcataggccatttcgataagcctcggctcgtagcccttc 42150

                                                                         
Query: 187   agcccaccaaagcatatcccaaaaggcacacccttctcgttgtacccagctggtacaacg 246
             |  ||||| ||||| ||  |||| ||||| ||||  | ||  ||||||||||||||| ||
Sbjct: 42149 aatccaccgaagcagatagcaaatggcactccctgattgtcatacccagctggtacagcg 42090

               
Query: 247   at 248
             ||
Sbjct: 42089 at 42088



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 462   aggatgtgctttgttgaaagctatgatgtctgcaagagaa 501
             ||||||||| |||||||| |||||||  ||||||||||||
Sbjct: 41642 aggatgtgcattgttgaatgctatgacatctgcaagagaa 41603
to top
>emb|AL731580.3|OSJN00227 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0001M07,
             complete sequence
          Length = 114335

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                         
Query: 127   actttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgc 186
             ||||||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||| |
Sbjct: 91028 actttggtagcttgctcaaaagcataggccatttcgataagcctcggctcgtagcccttc 90969

                                                                         
Query: 187   agcccaccaaagcatatcccaaaaggcacacccttctcgttgtacccagctggtacaacg 246
             |  ||||| ||||| ||  |||| ||||| ||||  | ||  ||||||||||||||| ||
Sbjct: 90968 aatccaccgaagcagatagcaaatggcactccctgattgtcatacccagctggtacagcg 90909

               
Query: 247   at 248
             ||
Sbjct: 90908 at 90907



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 462   aggatgtgctttgttgaaagctatgatgtctgcaagagaa 501
             ||||||||| |||||||| |||||||  ||||||||||||
Sbjct: 90461 aggatgtgcattgttgaatgctatgacatctgcaagagaa 90422



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 127   actttggtagcctgctcgaaagcatatgccatctcgatcagcct 170
             ||||||||||| |||||  ||||||| ||||| || ||||||||
Sbjct: 40360 actttggtagcttgctcataagcataggccatttcaatcagcct 40317
to top
>dbj|AK100045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153N14, full
            insert sequence
          Length = 2193

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 445  tttagcctctcctctataggatgtgctttgttgaaagctatgatgtctgcaag 497
            |||||||||||||| || |||||||| ||||||||||| || || ||||||||
Sbjct: 1581 tttagcctctcctcaatcggatgtgcgttgttgaaagcaattatatctgcaag 1529



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                        
Query: 130  ttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgcagc 189
            |||||||| ||||| || ||||| |||||||| || |||||||| || || |||| ||  
Sbjct: 1896 ttggtagcttgctcaaatgcataagccatctcaattagcctcggctcatagcccttcaat 1837

                       
Query: 190  ccaccaaagca 200
            |||||||||||
Sbjct: 1836 ccaccaaagca 1826
to top
>ref|XM_474691.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1485

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 439  aaatcttttagcctctcctctataggatgtgctttgttgaaagctatgatgtctgcaag 497
            |||||||| ||||||||||| |  |||||||| |||||||| |||||||  ||||||||
Sbjct: 1145 aaatctttaagcctctcctccaccggatgtgccttgttgaatgctatgacatctgcaag 1087



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 127  actttggtagcctgctcgaaagcatatgccatctcgatcagcct 170
            ||||||||||| |||||  ||||||| ||||| || ||||||||
Sbjct: 1457 actttggtagcttgctcataagcataggccatttcaatcagcct 1414
to top
>dbj|AK102846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A17, full
            insert sequence
          Length = 1794

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 439  aaatcttttagcctctcctctataggatgtgctttgttgaaagctatgatgtctgcaag 497
            |||||||| ||||||||||| |  |||||||| |||||||| |||||||  ||||||||
Sbjct: 1271 aaatctttaagcctctcctccaccggatgtgccttgttgaatgctatgacatctgcaag 1213



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 127  actttggtagcctgctcgaaagcatatgccatctcgatcagcct 170
            ||||||||||| |||||  ||||||| ||||| || ||||||||
Sbjct: 1583 actttggtagcttgctcataagcataggccatttcaatcagcct 1540
to top
>dbj|AK064021.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A03, full
            insert sequence
          Length = 1802

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 439  aaatcttttagcctctcctctataggatgtgctttgttgaaagctatgatgtctgcaag 497
            |||||||| ||||||||||| |  |||||||| |||||||| |||||||  ||||||||
Sbjct: 1259 aaatctttaagcctctcctccaccggatgtgccttgttgaatgctatgacatctgcaag 1201



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 127  actttggtagcctgctcgaaagcatatgccatctcgatcagcct 170
            ||||||||||| |||||  ||||||| ||||| || ||||||||
Sbjct: 1571 actttggtagcttgctcataagcataggccatttcaatcagcct 1528
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                           
Query: 130     ttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgcagc 189
               |||||||| ||||| || ||||| |||||||| || |||||||| || || |||| ||  
Sbjct: 9134991 ttggtagcttgctcaaatgcataagccatctcaattagcctcggctcatagcccttcaat 9134932

                          
Query: 190     ccaccaaagca 200
               |||||||||||
Sbjct: 9134931 ccaccaaagca 9134921
to top
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0662B01
          Length = 155913

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 130   ttggtagcctgctcgaaagcatatgccatctcgatcagcctcggttcgtatccctgcagc 189
             |||||||| ||||| || ||||| |||||||| || |||||||| || || |||| ||  
Sbjct: 29013 ttggtagcttgctcaaatgcataagccatctcaattagcctcggctcatagcccttcaat 28954

                        
Query: 190   ccaccaaagca 200
             |||||||||||
Sbjct: 28953 ccaccaaagca 28943
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 289     tgctcgggcgcgacgatcgcgt 310
               ||||||||||||||||||||||
Sbjct: 3040006 tgctcgggcgcgacgatcgcgt 3040027
to top
>gb|AC121285.7| Mus musculus chromosome 3, clone RP23-437I18, complete sequence
          Length = 190736

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 106   ttgaacatgggtggccctctcacttt 131
             |||| |||||||||||||||||||||
Sbjct: 91736 ttgagcatgggtggccctctcacttt 91761
to top
>emb|AJ414049.1|SMA414049 Stenotrophomonas maltophilia putative mdh gene (partial), putative
            ppi gene, putative efg gene, pam gene and gene encoding
            putative membrane protein
          Length = 6918

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 148  gcatatgccatctcgatcagcctcggttcg 177
            ||||| ||||||||||||||| ||||||||
Sbjct: 5129 gcataggccatctcgatcagcttcggttcg 5100
to top
>ref|XM_806041.1| Trypanosoma cruzi strain CL Brener urocanate hydratase
            (Tc00.1047053504045.110) partial mRNA
          Length = 2028

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 322  tccttcatcagcttctccagc 342
            |||||||||||||||||||||
Sbjct: 1445 tccttcatcagcttctccagc 1425
to top
>dbj|AB232922.1| Oryzias latipes hox gene cluster, complete cds, contains hoxCa
          Length = 238642

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     gagaaaacagtgcaagtggat 40
              |||||||||||||||||||||
Sbjct: 224484 gagaaaacagtgcaagtggat 224464
to top
>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb
          Length = 240727

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     gagaaaacagtgcaagtggat 40
              |||||||||||||||||||||
Sbjct: 229262 gagaaaacagtgcaagtggat 229242
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 244     acgatgccggggtggccgcca 264
               |||||||||||||||||||||
Sbjct: 3050587 acgatgccggggtggccgcca 3050567
to top
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence
          Length = 366120

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 445   tttagcctctcctctatagga 465
             |||||||||||||||||||||
Sbjct: 31035 tttagcctctcctctatagga 31015
to top
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 445   tttagcctctcctctatagga 465
             |||||||||||||||||||||
Sbjct: 33648 tttagcctctcctctatagga 33628
to top
>gb|AY602221.1| Petromyzon marinus bone morphogenetic protein 24B (BMP24B) mRNA,
           complete cds
          Length = 2037

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 cggggtggccgccaatggcg 270
           ||||||||||||||||||||
Sbjct: 882 cggggtggccgccaatggcg 901
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     gtggccgccaatggcgagat 274
               ||||||||||||||||||||
Sbjct: 3705585 gtggccgccaatggcgagat 3705566
to top
>ref|XM_981350.1| PREDICTED: Mus musculus similar to macrophage activation 2
            (LOC634650), mRNA
          Length = 2109

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgttccttcatcagcttctccagc 342
            ||||||||||| ||||||||||||
Sbjct: 1736 tgttccttcattagcttctccagc 1713
to top
>ref|XM_986052.1| PREDICTED: Mus musculus similar to macrophage activation 2
            (LOC634650), mRNA
          Length = 1955

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgttccttcatcagcttctccagc 342
            ||||||||||| ||||||||||||
Sbjct: 1750 tgttccttcattagcttctccagc 1727
to top
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 296     gcgcgacgatcgcgtcgagttggt 319
               ||||||||||||||||||| ||||
Sbjct: 3423112 gcgcgacgatcgcgtcgagctggt 3423089
to top
>gb|AC113270.8| Mus musculus chromosome 7, clone RP23-375O10, complete sequence
          Length = 175280

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   atgtctgcaagagaatggac 506
             ||||||||||||||||||||
Sbjct: 75345 atgtctgcaagagaatggac 75326
to top
>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 190    ccaccaaagcatatcccaaaaggcacaccctt 221
              ||||||||||| || ||||| |||||||||||
Sbjct: 109673 ccaccaaagcaaattccaaatggcacaccctt 109704
to top
>gb|BC111039.1| Mus musculus similar to macrophage activation 2, mRNA (cDNA clone
            MGC:117932 IMAGE:5349539), complete cds
          Length = 2779

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgttccttcatcagcttctccagc 342
            ||||||||||| ||||||||||||
Sbjct: 1735 tgttccttcattagcttctccagc 1712
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     cgggcgcgacgatcgcgtcg 312
               ||||||||||||||||||||
Sbjct: 1048660 cgggcgcgacgatcgcgtcg 1048641
to top
>ref|XM_966393.1| PREDICTED: Tribolium castaneum similar to CG8188-PA, isoform A
           (LOC660133), mRNA
          Length = 603

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 gtggccgccaatggcgagat 274
           ||||||||||||||||||||
Sbjct: 262 gtggccgccaatggcgagat 281
to top
>emb|AL731658.20| Mouse DNA sequence from clone RP23-329P17 on chromosome 11 Contains the
             Lif gene for leukemia inhibitory factor, two novel genes,
             the 3' end of a novel gene and a CpG island, complete
             sequence
          Length = 137519

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   gcttctccagccccttcgct 351
             ||||||||||||||||||||
Sbjct: 23004 gcttctccagccccttcgct 22985
to top
>gb|AC090799.2| Homo sapiens chromosome 11, clone RP11-242N18, complete sequence
          Length = 155803

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   gaaatcttttagcctctcct 457
             ||||||||||||||||||||
Sbjct: 38453 gaaatcttttagcctctcct 38434
to top
>ref|NM_001039647.1| Mus musculus similar to macrophage activation 2 (LOC634650), mRNA
          Length = 2779

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgttccttcatcagcttctccagc 342
            ||||||||||| ||||||||||||
Sbjct: 1735 tgttccttcattagcttctccagc 1712
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    cgggcgcgacgatcgcgtcg 312
              ||||||||||||||||||||
Sbjct: 935976 cgggcgcgacgatcgcgtcg 935957
to top
>ref|XM_623151.1| PREDICTED: Apis mellifera similar to translationally controlled
           tumor protein (LOC411832), mRNA
          Length = 1695

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 tgttccttcatcagcttctccagc 342
           ||||||||||||||||||| ||||
Sbjct: 294 tgttccttcatcagcttcttcagc 271
to top
>ref|XM_395299.2| PREDICTED: Apis mellifera similar to translationally controlled
           tumor protein (LOC411832), mRNA
          Length = 997

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 tgttccttcatcagcttctccagc 342
           ||||||||||||||||||| ||||
Sbjct: 294 tgttccttcatcagcttcttcagc 271
to top
>gb|AC114735.4| Homo sapiens BAC clone CTD-2034L19 from 4, complete sequence
          Length = 34229

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 138   ctgctcgaaagcatatgccatctc 161
             |||||| |||||||||||||||||
Sbjct: 30277 ctgctcaaaagcatatgccatctc 30254
to top
>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
             sequence
          Length = 225684

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     cttttacactaagagaaaac 27
             ||||||||||||||||||||
Sbjct: 85450 cttttacactaagagaaaac 85431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,274,704
Number of Sequences: 3902068
Number of extensions: 4274704
Number of successful extensions: 75493
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75079
Number of HSP's gapped (non-prelim): 411
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top