>SA155_YEAST (P43612) SIT4-associating protein SAP155|
          Length = 1002

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 42   RRDNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
            +  N+++  T    HN ++S  N+N+ N  +DND TR+ N
Sbjct: 954  KNSNSNINNT---NHNSNNSNNNDNNDNNDNDNDNTRNYN 990

>CAR3_DICDI (P35352) Cyclic AMP receptor 3 (cAMP receptor 3)|
          Length = 490

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 84  HNP---DHSRQNNNHHNQVSDNDXTRHNN 161
           H+P    ++ QNNNHH+  ++N    HNN
Sbjct: 309 HSPVGLSNNAQNNNHHHNHNNNHNNNHNN 337



 Score = 28.5 bits (62), Expect = 4.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 84  HNPDHSRQNNNHHNQVSDNDXTRHNN*AAGF 176
           HN +H+  +NNH+N  ++N+    NN ++ +
Sbjct: 327 HNNNHNNNHNNHNNNNNNNNSDFVNNDSSNY 357



 Score = 28.5 bits (62), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 78  ARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           A++N  H   NNNH+N  ++++   +NN
Sbjct: 318 AQNNNHHHNHNNNHNNNHNNHNNNNNNN 345

>LDLR1_XENLA (Q99087) Low-density lipoprotein receptor 1 precursor (LDL receptor|
           1)
          Length = 909

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   PKSSSMI*NNILLRRDNTDVPRT---LLARHNPDHSRQNNNHHNQVSDNDXTR 152
           P+   M    I  +R  T+ P+T   ++    PDH+ Q    H+Q++DN+  +
Sbjct: 772 PQRPKMASTTIAPQRPTTNSPKTTLRMITEKVPDHTTQQPMTHSQLADNNFAK 824

>MRJP4_APIME (Q17061) Major royal jelly protein 4 precursor (MRJP-4) (Bee-milk|
           protein) (Royal jelly protein RJP57-2)
          Length = 464

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +3

Query: 78  ARHNPDHSRQNNNHHNQV---SDNDXTRHNN 161
           ARH+     QNNN HN     S     RHNN
Sbjct: 432 ARHSSKSDNQNNNQHNDQAHHSSKSNNRHNN 462

>2ABA_YEAST (Q00362) Protein phosphatase PP2A regulatory subunit B (PR55) (Cell|
           division control protein 55)
          Length = 526

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 18  MI*NNILLRRDNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           MI  N++   DN +        HN  +S  N N HN + + D +   N
Sbjct: 374 MIYPNVVTSGDNDNGIVKTFDEHNAPNSNSNKNIHNSIQNKDSSSSGN 421

>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C|
          Length = 1341

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 33   ILLRRDNTDVPRTLLAR-HNPDHSRQNNNHHNQVSDNDXTRHNN 161
            I +  DN  +  + + R HN +H+  N+N++N  ++N+ + +NN
Sbjct: 899  INVNNDNNGMTISSVNREHNNNHNNNNDNNNNNNNNNNNSNNNN 942

>SFP1_YEAST (P32432) Zinc finger protein SFP1|
          Length = 683

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 27  NNILLRRDNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           N++ LR  N+       +RH P + + N+N+++ ++ N+ T HN+
Sbjct: 392 NDVFLRTSNSP------SRHVPHNKQINSNNNSGININNNTSHNS 430

>PTP3_DICDI (P54637) Tyrosine-protein phosphatase 3 (EC 3.1.3.48)|
           (Protein-tyrosine-phosphate phosphohydrolase 3)
          Length = 989

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +3

Query: 69  TLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           T++ ++N +++  NNN++N  ++N+   +NN
Sbjct: 132 TMIIKNNNNNNNNNNNNNNNNNNNNNNNNNN 162



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 27  NNILLRRDNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           N ++++ +N +        +N +++  NNN++N  ++N+   +NN
Sbjct: 131 NTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 175

>MSC3_KLULA (Q6CK58) Meiotic sister-chromatid recombination protein 3|
          Length = 652

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 54  TDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           TD   T  + HN +H+  N+N++N  S +   RH +
Sbjct: 539 TDNFDTNASGHNINHNNNNHNNNNNTSSSSSLRHES 574

>MED2_YEAST (Q12124) RNA polymerase II mediator complex subunit 2|
          Length = 431

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 27  NNILLRRDNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           NNI   ++  D        +N D   +NNN  N+ ++N   ++NN
Sbjct: 284 NNINSTKNGKDNNNESNKNNNGDEKNKNNNEDNENNNNSSEKNNN 328

>HYPB_BRAJA (Q45257) Hydrogenase nickel incorporation protein hypB|
          Length = 302

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 84  HNPDHSRQNNNHHNQVSDNDXTRHNN*AAGFACL--CNRN 197
           H+ DH    ++HH+   D D   H++ A G A L  C  N
Sbjct: 26  HDHDHGHDGHHHHHHGHDQDHHHHHDHAHGDAGLLDCGAN 65

>NRP1_YEAST (P32770) Asparagine-rich protein (Protein ARP)|
          Length = 719

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 84  HNPDHSRQNNNHHN-QVSDNDXTRHNN 161
           HN +H   NNNHHN  ++ N  T +NN
Sbjct: 531 HNNNH---NNNHHNGSINSNSNTNNNN 554

>SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing Ras-interactor|
           protein)
          Length = 1790

 Score = 24.6 bits (52), Expect(2) = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 108 NNNHHNQVSDNDXTRHNN 161
           NNN +N VS+N+   +NN
Sbjct: 86  NNNKNNNVSNNNNNNNNN 103



 Score = 21.9 bits (45), Expect(2) = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 69  TLLARHNPDHSRQNNNHHNQ 128
           T  A    +  +Q++NHHNQ
Sbjct: 50  TATATTTTNRQQQHHNHHNQ 69

>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 intergenic|
           region
          Length = 758

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +3

Query: 45  RDNTDVPRT------LLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           + NT VP+        L  +N +++  NNN++N  S+N    +NN
Sbjct: 587 KTNTSVPQNDSTSVFPLPNNNNNNNNNNNNNNNNNSNNSNNNNNN 631

>CDC27_YEAST (P38042) Anaphase-promoting complex subunit CDC27 (Cell division|
           control protein 27) (Anaphase-promoting complex subunit
           3)
          Length = 758

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 54  TDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           T  P  LL   N D + QNNN++N  ++N+   +NN
Sbjct: 350 TTPPSKLL---NNDRNHQNNNNNNNNNNNNNNNNNN 382



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 63  PRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           P + L  ++ +H   NNN++N  ++N+   +NN
Sbjct: 352 PPSKLLNNDRNHQNNNNNNNNNNNNNNNNNNNN 384

>WOX3_ARATH (Q9SIB4) WUSCHEL-related homeobox 3 (Protein PRESSED FLOWER)|
          Length = 244

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 60  VPRTLLARHNPDHSRQNNNHHN 125
           V + ++  HNP H   +N+HHN
Sbjct: 103 VNKNIIDHHNPYHHHHHNHHHN 124

>PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)|
           (PI3-kinase) (PtdIns-3-kinase) (PI3K)
          Length = 1858

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 54  TDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           T  P T    +N +++  NNN++N  ++N+   +NN
Sbjct: 177 TPSPTTTSNNNNNNNNNNNNNNNNNNNNNNNNNNNN 212

>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in|
           FKH1-STH1 intergenic region
          Length = 964

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +3

Query: 27  NNILLRRDNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN*AAGFACLCNRN 197
           NN+  + +N +    +    N +H+  NN+++N  ++N+   +NN  +G +   N N
Sbjct: 826 NNVSGKNNNNN---NITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNSGNSSNNNNN 879

>TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC 3.4.21.-)|
          Length = 1905

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 48  DNTDVPRTLLARHNPDHSRQNNNHHNQVSDNDXTRHNN 161
           D T  P   +  +N ++++ NNN++N  ++N+   +NN
Sbjct: 87  DTTIKPSININNNNNNNNKLNNNNNNNNNNNNNNNNNN 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,776,477
Number of Sequences: 219361
Number of extensions: 429647
Number of successful extensions: 1821
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)