>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete
             sequence
          Length = 158742

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 252   gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 304
             |||||||||||  |||||||||| |  ||||||||||| ||||| ||||||||
Sbjct: 75076 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 75128

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 252     gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 304
               |||||||||||  |||||||||| |  ||||||||||| ||||| ||||||||
Sbjct: 6527104 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 6527052

>dbj|AK068249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146P20, full
            insert sequence
          Length = 2388

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 252  gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 304
            |||||||||||  |||||||||| |  ||||||||||| ||||| ||||||||
Sbjct: 1857 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 1805

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 252     gtttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 304
               |||||||||||  |||||||||| |  ||||||||||| ||||| ||||||||
Sbjct: 6529490 gtttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 6529438

>ref|NM_195383.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0041L14.16), mRNA
          Length = 1656

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 254  ttattcttctgcttcaactagccttccacgtacccatctcatcttagactt 304
            |||||||||  |||||||||| |  ||||||||||| ||||| ||||||||
Sbjct: 1656 ttattcttccacttcaactagtcgcccacgtacccacctcattttagactt 1606

>emb|BX001047.7| Zebrafish DNA sequence from clone CH211-288D18 in linkage group 7,
             complete sequence
          Length = 87084

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 131   tgaatccgaatcaagtattcca 152
             ||||||||||||||||||||||
Sbjct: 63976 tgaatccgaatcaagtattcca 63955

>ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.1 mRNA, complete cds
          Length = 2223

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 199 gaaacattttcagatgatgaa 219
           |||||||||||||||||||||
Sbjct: 616 gaaacattttcagatgatgaa 636

>ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.2 mRNA, complete cds
          Length = 2239

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 199 gaaacattttcagatgatgaa 219
           |||||||||||||||||||||
Sbjct: 651 gaaacattttcagatgatgaa 671

>gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, complete sequence
          Length = 215644

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 188  gaagcaaatctgaaacattttcaga 212
            |||||||||||| ||||||||||||
Sbjct: 4070 gaagcaaatctggaacattttcaga 4046

>gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, complete sequence
          Length = 138021

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 188   gaagcaaatctgaaacattttcaga 212
             |||||||||||| ||||||||||||
Sbjct: 50604 gaagcaaatctggaacattttcaga 50580

>emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH41ZA09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1616

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 199 gaaacattttcagatgatgaa 219
           |||||||||||||||||||||
Sbjct: 650 gaaacattttcagatgatgaa 670

>gb|AC091788.6| Homo sapiens BAC clone RP11-400A23 from 2, complete sequence
          Length = 92932

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 231   tttgactgcttagacctcctagttt 255
             |||||||||||||| ||||||||||
Sbjct: 29442 tttgactgcttagatctcctagttt 29466

>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 199   gaaacattttcagatgatgaa 219
             |||||||||||||||||||||
Sbjct: 90589 gaaacattttcagatgatgaa 90609

>dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative RNA
           pseudouridylate synthase, complete cds, clone:
           RAFL17-47-D22
          Length = 1546

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 199 gaaacattttcagatgatgaa 219
           |||||||||||||||||||||
Sbjct: 608 gaaacattttcagatgatgaa 628

>gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome 16, complete sequence
          Length = 138498

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tctgaaacattttcagatga 215
              ||||||||||||||||||||
Sbjct: 132960 tctgaaacattttcagatga 132941

>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17, complete
              sequence
          Length = 224482

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    aatccgaatcaagtattcca 152
              ||||||||||||||||||||
Sbjct: 100273 aatccgaatcaagtattcca 100292

>emb|BX119919.5| Human DNA sequence from clone RP11-987D21 on chromosome X, complete
            sequence
          Length = 55442

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  aaatctgaaacattttcaga 212
            ||||||||||||||||||||
Sbjct: 1956 aaatctgaaacattttcaga 1937

>gb|AC026250.16| Homo sapiens chromosome 11, clone RP11-540A21, complete sequence
          Length = 160681

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      cctaaaactgcactacattc 24
              ||||||||||||||||||||
Sbjct: 142384 cctaaaactgcactacattc 142403

>gb|AC068206.10| Homo sapiens chromosome 15, clone RP11-222E7, complete sequence
          Length = 108175

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aactactaatgtacaatgct 63
             ||||||||||||||||||||
Sbjct: 90306 aactactaatgtacaatgct 90287

>gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, complete sequence
          Length = 185359

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    taatgtacaatgctcatcagtaag 73
             ||||||||||||||||||| ||||
Sbjct: 85737 taatgtacaatgctcatcaataag 85714

>gb|AC090257.5| Homo sapiens chromosome 15, clone RP11-301A18, complete sequence
          Length = 159299

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aactactaatgtacaatgct 63
              ||||||||||||||||||||
Sbjct: 113204 aactactaatgtacaatgct 113223

>gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete sequence
          Length = 19120

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  caaatctgaaacattttcag 211
            ||||||||||||||||||||
Sbjct: 2275 caaatctgaaacattttcag 2256

>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186278

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    aaatctgaaacattttcaga 212
              ||||||||||||||||||||
Sbjct: 182651 aaatctgaaacattttcaga 182632

>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    ccagggaggaacataccaac 124
              ||||||||||||||||||||
Sbjct: 121867 ccagggaggaacataccaac 121848

>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   gaaacattttcagatgatga 218
             ||||||||||||||||||||
Sbjct: 54557 gaaacattttcagatgatga 54576


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,547,468
Number of Sequences: 3902068
Number of extensions: 2547468
Number of successful extensions: 51977
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51926
Number of HSP's gapped (non-prelim): 51
length of query: 318
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 296
effective length of database: 17,147,199,772
effective search space: 5075571132512
effective search space used: 5075571132512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)