ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glycera... 379 e-102
2gb|AY290728.1| Triticum aestivum glyceraldehyde 3-phosphate dehy... 121 9e-25
3ref|XM_479895.1| Oryza sativa (japonica cultivar-group), mRNA 66 5e-08
4ref|XM_507107.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 5e-08
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 5e-08
6dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic D... 66 5e-08
7dbj|AK105038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 5e-08
8dbj|AK103777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 5e-08
9dbj|AK100159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 5e-08
10dbj|AK071097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 5e-08
11gb|U31676.1|OSU31676 Oryza sativa clone glyceraldehyde-3-phospha... 66 5e-08
12gb|BT016387.1| Zea mays clone Contig220 mRNA sequence 54 2e-04
13emb|X73151.1|ZMGAPC2 Z.mays GapC2 gene 54 2e-04
14emb|X15596.1|ZMGPC1 Maize Gpc1 gene for glyceraldehyde-3-phospha... 54 2e-04
15gb|L13432.1|MZEGAPDB Zea mays GAPC2 glyceraldehyde-3-phosphate d... 54 2e-04
16gb|U45858.1|ZMU45858 Zea mays glyceraldehyde-3-phosphate dehydro... 54 2e-04
17gb|U45855.1|ZMU45855 Zea mays glyceraldehyde-3-phosphate dehydro... 54 2e-04
18gb|BT016419.1| Zea mays clone Contig252 mRNA sequence 50 0.003
19gb|AY109359.1| Zea mays CL2022_2 mRNA sequence 50 0.003
20emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chro... 44 0.17
21gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome... 44 0.17
22emb|X07156.1|ZMCGAPDH Maize mRNA for cytosolic GAPDH (GapC) glyc... 42 0.68
23ref|XM_445315.1| Candida glabrata CBS138, CAGL0C03201g partial mRNA 40 2.7
24gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 2.7
25emb|CR380949.1| Candida glabrata strain CBS138 chromosome C comp... 40 2.7
26gb|AC104792.5| Homo sapiens BAC clone RP11-202B22 from 2, comple... 40 2.7 
>emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1365

 Score =  379 bits (191), Expect = e-102
 Identities = 209/213 (98%), Gaps = 2/213 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctgaacgatttacataaatcaagcagtacttgactagcaactcggtgcggnaaaacagta 60
            ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct: 1228 ctgaacgatttacataaatcaag-agtacttgactagcaactcggtgcggaaaaacag-a 1171

                                                                        
Query: 61   tggtaactcatgtccaactaacatgaaccaggcgtctagcgacaccatccacatttattc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 tggtaactcatgtccaactaacatgaaccaggcgtctagcgacaccatccacatttattc 1111

                                                                        
Query: 121  ccatagacaaaggggcacctctgaccaggcgccacaaggaaagcagaacgctctactggg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 ccatagacaaaggggcacctctgaccaggcgccacaaggaaagcagaacgctctactggg 1051

                                             
Query: 181  tcttggccatgtggcggatcaggncgacaacac 213
            ||||||||||||||||||||||| |||||||||
Sbjct: 1050 tcttggccatgtggcggatcaggtcgacaacac 1018
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>gb|AY290728.1| Triticum aestivum glyceraldehyde 3-phosphate dehydrogenase-like
           mRNA, partial sequence
          Length = 496

 Score =  121 bits (61), Expect = 9e-25
 Identities = 135/159 (84%), Gaps = 17/159 (10%)
 Strand = Plus / Minus

                                                                       
Query: 62  ggtaactcatgtccaactaacatgaaccagg---cgtctagcgacaccatccacattta- 117
           |||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||| 
Sbjct: 397 ggtaactcatgtccaactaacatgaaccaggcgtcgtctggcgacaccatccacatttat 338

                                                                       
Query: 118 --ttcccatagacaa---aggggcacctctgaccaggcgccacaaggaaagcagaacgct 172
             ||| |||||||||   |||| ||||||||||||        ||||||| |||||||||
Sbjct: 337 tcttcgcatagacaaagcagggacacctctgacca--------aaggaaatcagaacgct 286

                                                  
Query: 173 ctactgggtcttggccatgtggcggatcaggncgacaac 211
           |||||| |||||||||||||||||||||||  |||||||
Sbjct: 285 ctactgagtcttggccatgtggcggatcagatcgacaac 247
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>ref|XM_479895.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1356

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 172  tctactgggtcttggccatgtggcggatcaggncga 207
            |||||||||||||||||||||||||||||||| |||
Sbjct: 1059 tctactgggtcttggccatgtggcggatcaggtcga 1024
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>ref|XM_507107.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.15 mRNA
          Length = 1518

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 172  tctactgggtcttggccatgtggcggatcaggncga 207
            |||||||||||||||||||||||||||||||| |||
Sbjct: 1092 tctactgggtcttggccatgtggcggatcaggtcga 1057
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                   
Query: 172     tctactgggtcttggccatgtggcggatcaggncga 207
               |||||||||||||||||||||||||||||||| |||
Sbjct: 1522421 tctactgggtcttggccatgtggcggatcaggtcga 1522386
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>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1163_G08
          Length = 150676

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 172   tctactgggtcttggccatgtggcggatcaggncga 207
             |||||||||||||||||||||||||||||||| |||
Sbjct: 49909 tctactgggtcttggccatgtggcggatcaggtcga 49874
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>dbj|AK105038.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C12, full
           insert sequence
          Length = 455

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 172 tctactgggtcttggccatgtggcggatcaggncga 207
           |||||||||||||||||||||||||||||||| |||
Sbjct: 236 tctactgggtcttggccatgtggcggatcaggtcga 201
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>dbj|AK103777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033144F10, full
            insert sequence
          Length = 1356

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 172  tctactgggtcttggccatgtggcggatcaggncga 207
            |||||||||||||||||||||||||||||||| |||
Sbjct: 1059 tctactgggtcttggccatgtggcggatcaggtcga 1024
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>dbj|AK100159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L08, full
            insert sequence
          Length = 1783

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 172  tctactgggtcttggccatgtggcggatcaggncga 207
            |||||||||||||||||||||||||||||||| |||
Sbjct: 1530 tctactgggtcttggccatgtggcggatcaggtcga 1495
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>dbj|AK071097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080G06, full
            insert sequence
          Length = 1518

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 172  tctactgggtcttggccatgtggcggatcaggncga 207
            |||||||||||||||||||||||||||||||| |||
Sbjct: 1092 tctactgggtcttggccatgtggcggatcaggtcga 1057
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>gb|U31676.1|OSU31676 Oryza sativa clone glyceraldehyde-3-phosphate dehydrogenase (Gpc)
            mRNA, complete cds
          Length = 1326

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 172  tctactgggtcttggccatgtggcggatcaggncga 207
            |||||||||||||||||||||||||||||||| |||
Sbjct: 1043 tctactgggtcttggccatgtggcggatcaggtcga 1008
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>gb|BT016387.1| Zea mays clone Contig220 mRNA sequence
          Length = 1571

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 171  ctctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||||  |||||||||||||||| ||||
Sbjct: 1242 ctctactgggtcttgaacatgtggcggatcaggtcgac 1205
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>emb|X73151.1|ZMGAPC2 Z.mays GapC2 gene
          Length = 6166

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 171  ctctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||||  |||||||||||||||| ||||
Sbjct: 5814 ctctactgggtcttgaacatgtggcggatcaggtcgac 5777
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>emb|X15596.1|ZMGPC1 Maize Gpc1 gene for glyceraldehyde-3-phosphate dehydrogenase (GADPH)
            subunit C
          Length = 5955

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 171  ctctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||||  |||||||||||||||| ||||
Sbjct: 5494 ctctactgggtcttgaacatgtggcggatcaggtcgac 5457
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>gb|L13432.1|MZEGAPDB Zea mays GAPC2 glyceraldehyde-3-phosphate dehydrogenase mRNA,
           partial cds
          Length = 971

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 171 ctctactgggtcttggccatgtggcggatcaggncgac 208
           |||||||||||||||  |||||||||||||||| ||||
Sbjct: 747 ctctactgggtcttgaacatgtggcggatcaggtcgac 710
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>gb|U45858.1|ZMU45858 Zea mays glyceraldehyde-3-phosphate dehydrogenase (gpc2) gene,
            complete cds
          Length = 4590

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 171  ctctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||||  |||||||||||||||| ||||
Sbjct: 4473 ctctactgggtcttgaacatgtggcggatcaggtcgac 4436
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>gb|U45855.1|ZMU45855 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC2 (gpc2) mRNA,
            complete cds
          Length = 1307

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 171  ctctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||||  |||||||||||||||| ||||
Sbjct: 1082 ctctactgggtcttgaacatgtggcggatcaggtcgac 1045
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>gb|BT016419.1| Zea mays clone Contig252 mRNA sequence
          Length = 1442

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 173  ctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||  |||||||||||||||| ||||
Sbjct: 1080 ctactgggtcttgaacatgtggcggatcaggtcgac 1045
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>gb|AY109359.1| Zea mays CL2022_2 mRNA sequence
          Length = 3495

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 173  ctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||||||||  |||||||||||||||| ||||
Sbjct: 3120 ctactgggtcttgaacatgtggcggatcaggtcgac 3085
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>emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chromosome 16, complete
              sequence
          Length = 212227

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 110    cacatttattcccatagacaaa 131
              ||||||||||||||||||||||
Sbjct: 118207 cacatttattcccatagacaaa 118228
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>gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome 16, complete sequence
          Length = 192492

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 110    cacatttattcccatagacaaa 131
              ||||||||||||||||||||||
Sbjct: 186048 cacatttattcccatagacaaa 186069
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>emb|X07156.1|ZMCGAPDH Maize mRNA for cytosolic GAPDH (GapC) glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1305

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 173  ctactgggtcttggccatgtggcggatcaggncgac 208
            |||||||| ||||  |||||||||||||||| ||||
Sbjct: 1088 ctactgggacttgaacatgtggcggatcaggtcgac 1053
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>ref|XM_445315.1| Candida glabrata CBS138, CAGL0C03201g partial mRNA
          Length = 9327

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 7    gatttacataaatcaagcagtact 30
            ||||||||||||||||||| ||||
Sbjct: 1696 gatttacataaatcaagcattact 1719
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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    aactcatgtccaactaacatgaac 88
             |||||||||||||| |||||||||
Sbjct: 82729 aactcatgtccaacaaacatgaac 82752
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>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence
          Length = 558804

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      gatttacataaatcaagcagtact 30
              ||||||||||||||||||| ||||
Sbjct: 313499 gatttacataaatcaagcattact 313522
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>gb|AC104792.5| Homo sapiens BAC clone RP11-202B22 from 2, complete sequence
          Length = 53135

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   ttattcccatagacaaaggg 134
             ||||||||||||||||||||
Sbjct: 43925 ttattcccatagacaaaggg 43906


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,280,920
Number of Sequences: 3902068
Number of extensions: 1280920
Number of successful extensions: 87040
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86975
Number of HSP's gapped (non-prelim): 62
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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