ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1o10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase ... 337 3e-92
2PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6... 55 2e-07
3PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 44 6e-04
4PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.... 41 0.004
5Y2577_MYCTU (Q50644) Hypothetical protein Rv2577/MT2654 39 0.011
6PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (... 38 0.032
7XRCC2_HUMAN (O43543) DNA-repair protein XRCC2 (X-ray repair cros... 34 0.46
8RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigment... 30 5.1

>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score =  337 bits (863), Expect = 3e-92
 Identities = 157/158 (99%), Positives = 157/158 (99%)
 Frame = -1

Query: 676 TAHRVXGYSSNSWYADQGSFEEPEGRESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQC 497
           TAHRV GYSSNSWYADQGSFEEPEGRESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQC
Sbjct: 211 TAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQC 270

Query: 496 VNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLF 317
           VNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLF
Sbjct: 271 VNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLF 330

Query: 316 EYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 203
           EYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS
Sbjct: 331 EYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 368



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>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid|
           phosphatase) (APase6)
          Length = 614

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
 Frame = -1

Query: 652 SSNSWYADQGSFEEPEGRESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQCVNA----- 488
           S    Y+   S  +   RE+ + L  +Y VD    GH+H YER  PL  +  ++      
Sbjct: 463 SHRPMYSSAYSSYQLHVREAFEGLLLKYGVDAYLSGHIHWYERLYPLGANGTIDTAAIVN 522

Query: 487 DKTHYSGTMNGTIFVVAGGGG-----SHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSL 323
           + T+Y+        ++ G  G     S  S         ++     YGF+KLT FN ++L
Sbjct: 523 NNTYYAHNGKSITHIINGMAGNIESHSEFSDGEGLTNITALLDKVHYGFSKLTIFNETAL 582

Query: 322 LFEYMKSSDGKVYDSFTI 269
            +E ++  DG V DS T+
Sbjct: 583 KWELIRGDDGTVGDSLTL 600



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>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
 Frame = -1

Query: 601 RESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQCVNADKTHYSGTM------NGTIFVV 440
           R   ++ + +Y+VD+ + GHVH YER+      +  N      +G        +  I++ 
Sbjct: 337 RVMYEQWFVKYKVDVVFAGHVHAYERS-----ERVSNIAYNIVNGLCEPISDESAPIYIT 391

Query: 439 AGGGGSH---LSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 293
            G GG+    L+      PK+S FR+  +G   L   N +   F + ++ DG
Sbjct: 392 IGDGGNSEGLLTDMMQPQPKYSAFREASFGHGLLEIKNRTHAYFSWNRNQDG 443



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>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)|
           (Manganese(II) purple acid phosphatase)
          Length = 464

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
 Frame = -1

Query: 640 WYADQG-SFEEPEGRESLQKLW-QRYRVDIAYFGHVHNYERTCPLYQSQCVNADKTHYSG 467
           WY      + E E    + + W  +Y+VD+ + GHVH YER+      +  N      +G
Sbjct: 316 WYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERS-----ERVSNVAYNIVNG 370

Query: 466 ------TMNGTIFVVAGGGGS---HLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLFE 314
                   +  +++  G GG+     ++ T   PK+S FR+  +G       N +   + 
Sbjct: 371 LCAPVNDKSAPVYITIGDGGTLEGLATNMTEPQPKYSAFREASFGHAIFDITNRTHAHYS 430

Query: 313 YMKSSDG 293
           + ++ DG
Sbjct: 431 WHRNQDG 437



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>Y2577_MYCTU (Q50644) Hypothetical protein Rv2577/MT2654|
          Length = 529

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 38/120 (31%)
 Frame = -1

Query: 601 RESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQCVNA-------DKTHYSGTMNGTIFV 443
           R+    L+ +Y+VD+   GH H+YER+ PL  +   +         ++    +  GT+ +
Sbjct: 366 RQEWLPLFDQYQVDLVVCGHEHHYERSHPLRGALGTDTRTPIPVDTRSDLIDSTRGTVHL 425

Query: 442 VAGGGGSHLSSYTTAIPK-----------------------------WSIFRDHD--YGF 356
           V GGGG+   +     P+                             WS FRD D  YGF
Sbjct: 426 VIGGGGTSKPTNALLFPQPRCQVITGVGDFDPAIRRKPSIFVLEDAPWSAFRDRDNPYGF 485



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>PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (EC 3.1.3.2)|
           (PAP)
          Length = 432

 Score = 37.7 bits (86), Expect = 0.032
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
 Frame = -1

Query: 619 FEEPEGRESLQKLW-QRYRVDIAYFGHVHNYERTCPLYQ-SQCVNADKTHYSGTMNGTIF 446
           F E E   +  + W  +Y+VD+ + GHVH YER+  +   +  +           +  ++
Sbjct: 297 FMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVY 356

Query: 445 VVAGGGGSH---LSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDGKVYDSF 275
           +  G  G++    S+     P++S FR+  +G       N +   F + ++ DG   ++ 
Sbjct: 357 ITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEAD 416

Query: 274 TI 269
           ++
Sbjct: 417 SV 418



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>XRCC2_HUMAN (O43543) DNA-repair protein XRCC2 (X-ray repair cross-complementing|
           protein 2)
          Length = 280

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 34  RYKXIYNESYTHLLHDLFTSTYKLCS*P---ILLLNTCPQFYWMD 159
           R+  +Y  S THLL  L++     CS P   +L+L++   FYW+D
Sbjct: 114 RFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWID 158



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>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2095

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
 Frame = -1

Query: 532  YERTCPLYQ--SQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYG 359
            + ++ PL Q  S  VN ++  + G    T      G     +   T    WS   + + G
Sbjct: 914  HRKSGPLCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSKTKNDNWSGNTNQETG 973

Query: 358  FTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS*LISSGRH 179
             + +   N   L   + +S +G +YDS+         L  +HD+C  +       S+  H
Sbjct: 974  KSLVAKDNGEELNKHHCESQNGSLYDSY---------LVSLHDNCTLSQTTINEPSTKSH 1024

Query: 178  VNVMEGHPSNKIV 140
            +++ +  P  K+V
Sbjct: 1025 LSIEKSRPEVKLV 1037


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,515,357
Number of Sequences: 219361
Number of extensions: 1431108
Number of successful extensions: 3674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3668
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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