ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35e16 |
|---|---|
| Clone Library Name | barley_pub |
>IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment)| Length = 646 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 261 HLRGLLLPSTRSFLGEMQPPTNSLRFHGRRTEQNIVKTSSTTYR 392 H G LL + L +++ P +G+R N++KTS TT++ Sbjct: 589 HCFGFLLHLPSNELSKVESPETETSVYGKRLVYNLIKTSPTTFK 632
>YELL_DROMD (Q9GP71) Protein yellow precursor| Length = 568 Score = 30.0 bits (66), Expect = 3.2 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 21/116 (18%) Frame = +3 Query: 45 PRYKDNSIHSSMMIQKPPSLWGIHDASQQYPPHLSG--GFPRWRR--------------A 176 P Y + + S++ QKP + WG S+ Y P L+G G P R Sbjct: 441 PLYTTTNQYRSLLSQKPQTSWGPSLPSRNYLPALNGNPGIPGSRNNLNNLGAPGQVVSSV 500 Query: 177 YCTTNT*IRRTYRSPRL----RTNGTNTET-GSHLRGLLLPSTRSFLGEMQPPTNS 329 +TNT P+ + NG N ET G HL L P+ G ++ N+ Sbjct: 501 SVSTNTVGPSGIEVPKAYVFNQHNGLNYETSGPHLFPTLQPAPSQLGGGLKTYVNA 556
>APBB3_HUMAN (O95704) Amyloid beta A4 precursor protein-binding family B member| 3 (Fe65-like protein 2) (Fe65L2) Length = 486 Score = 30.0 bits (66), Expect = 3.2 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Frame = +3 Query: 93 PPSLWGIHDASQQYPPHLSGGFPRWRRAYCTTNT*IRRTYRSPRLRTNGTNTETGSHLRG 272 PP IHDA+ Y H+ G +W+R T+ GT TE + G Sbjct: 32 PPGWRKIHDAAGTYYWHVPSGSTQWQRP----------TWELGDAEDPGTGTE---GIWG 78 Query: 273 LLLPSTRSF--LGEMQPPTNSLRFHG 344 L P RSF L +NSL ++G Sbjct: 79 LRPPKGRSFSSLESSLDRSNSLSWYG 104
>AROC_SYNEL (Q8DLM1) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 363 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +2 Query: 101 TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 280 T GH +TT GGV + G +++ +IQ + D R + RLT+ R S Sbjct: 4 TFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQ--KELDRRRPGQSRLTTPRQES 61 Query: 281 SKYQVLSG 304 + ++LSG Sbjct: 62 DRCEILSG 69
>NOCR_AGRT7 (P35112) Regulatory protein nocR| Length = 300 Score = 29.3 bits (64), Expect = 5.4 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = +2 Query: 17 VKCKVPTFPTKVQRQQYTLQHDDTKTALTLGHS*CITTVSPPSFGGVSPLAAGILHYKYI 196 V + T P++ + +LQH D ++ G +TT PSF V L G ++ Sbjct: 121 VSVYLDTVPSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPG---HRLE 177 Query: 197 NKENIQITEITDE 235 +KE + T++ E Sbjct: 178 DKETVHATDLEGE 190
>NOCR_AGRT5 (Q00678) Regulatory protein nocR| Length = 300 Score = 29.3 bits (64), Expect = 5.4 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = +2 Query: 17 VKCKVPTFPTKVQRQQYTLQHDDTKTALTLGHS*CITTVSPPSFGGVSPLAAGILHYKYI 196 V + T P++ + +LQH D ++ G +TT PSF V L G ++ Sbjct: 121 VSVYLDTVPSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPG---HRLE 177 Query: 197 NKENIQITEITDE 235 +KE + T++ E Sbjct: 178 DKETVHATDLEGE 190
>AROC_ANASP (Q8YYP9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 362 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = +2 Query: 101 TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 280 T GH ITT GGV + G I+ E IQ+ D R + ++T+ R + Sbjct: 4 TFGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLE--LDRRRPGQSKITTPRKEA 61 Query: 281 SKYQVLSG 304 ++LSG Sbjct: 62 DTCEILSG 69
>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)| Length = 3218 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -1 Query: 404 VNIIPVSCGRCFHNVLFCPSSMKAQAVGWWLHFPQK-GPGTWK 279 ++++PVS GRC + F S++ + + W Q PG+W+ Sbjct: 1242 LSLLPVSSGRCQNRSKFISSAILMRCLAWTQLLRQHCAPGSWE 1284
>ADA2A_RAT (P22909) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) (CA2-47) (Alpha-2D adrenergic receptor) Length = 450 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 214 LYVLLIYVFVVQYARRQRGNPPERWGGYCCDA 119 L ++L+YV + Q A+R+ PP R G C A Sbjct: 210 LIMILVYVRIYQIAKRRTRVPPSRRGPDACSA 241
>ADA2A_MOUSE (Q01338) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) Length = 450 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 214 LYVLLIYVFVVQYARRQRGNPPERWGGYCCDA 119 L ++L+YV + Q A+R+ PP R G C A Sbjct: 210 LIMILVYVRIYQIAKRRTRVPPSRRGPDACSA 241
>DPOE1_MOUSE (Q9WVF7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2283 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +2 Query: 95 ALTLGHS*C---ITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDR 256 +LT+ S C + + P ++GG+ +H + +++ Q E TDE + +++ Sbjct: 1901 SLTISFSRCWEFLLWMDPSNYGGIKGKVPSSIHCGQVKEQDSQAREETDEEEEDKEK 1957
>MOT3_MOUSE (O35308) Monocarboxylate transporter 3 (MCT 3) (Proton-coupled| monocarboxylate transporter 3) Length = 492 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 Query: 200 YLCICSAVCPPPAGKPPRK 144 + C C AV PP G PPR+ Sbjct: 186 HCCACGAVMRPPPGPPPRR 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,896,829 Number of Sequences: 219361 Number of extensions: 1963750 Number of successful extensions: 5280 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5270 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
