Clone Name	rbaal2d09
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	369	2e-99
2	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	295	3e-77
3	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	291	4e-76
4	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	289	2e-75
5	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	289	2e-75
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	250	1e-63
7	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	176	2e-41
8	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	6e-29
9	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	6e-29
10	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	6e-29
11	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	6e-29
12	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	6e-29
13	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	2e-28
14	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	2e-28
15	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	2e-28
16	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	2e-28
17	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	2e-28
18	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	2e-28
19	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	2e-28
20	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	9e-25
21	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	119	4e-24
22	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	8e-19
23	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	1e-11
24	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	1e-11
25	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	68	1e-08
26	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	68	1e-08
27	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	68	1e-08
28	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	68	1e-08
29	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	62	7e-07
30	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	0.67
31	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	0.67
32	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	0.67
33	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	0.67
34	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	2.7
35	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	2.7
36	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	2.7
37	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	2.7
38	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	2.7
39	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	2.7
40	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	2.7
41	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	2.7
42	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	2.7
43	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	2.7
44	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	2.7
45	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	2.7

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  369 bits (186), Expect = 2e-99
 Identities = 209/213 (98%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-cgt 59
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1619 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgt 1560

                                                                        
Query: 60   cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cg 118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1559 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcg 1500

                                                                        
Query: 119  ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtg-t 177
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1499 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtt 1440

                                             
Query: 178  gtatggagaattttctaaccgtanaaggaacca 210
            ||||||||||||||||||||||| |||||||||
Sbjct: 1439 gtatggagaattttctaaccgtagaaggaacca 1407

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 7612

                                                                        
Query: 61   gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 7552

                                         
Query: 121  caaagtaccttgctgtgctcctttacctc 149
            |||||||||||||||||||||||||||||
Sbjct: 7551 caaagtaccttgctgtgctcctttacctc 7523



 Score =  125 bits (63), Expect = 6e-26
 Identities = 65/66 (98%)
 Strand = Plus / Minus

                                                                        
Query: 145  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtanaag 204
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                  
Query: 205  gaacca 210
            ||||||
Sbjct: 7295 gaacca 7290

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 1252

                                                                        
Query: 61   gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 1192

                                       
Query: 121  caaagtaccttgctgtgctcctttacc 147
            |||||||||||||||||||||||||||
Sbjct: 1191 caaagtaccttgctgtgctcctttacc 1165

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  289 bits (146), Expect = 2e-75
 Identities = 194/209 (92%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   taaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcg 61
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| 
Sbjct: 684 taaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtca 626

                                                                       
Query: 62  ctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggc 121
           ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |||
Sbjct: 625 ctcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggc 566

                                                                       
Query: 122 aaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtat 181
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtat 506

                                        
Query: 182 ggagaattttctaaccgtanaaggaacca 210
           ||||||| ||||||||||| |||| ||||
Sbjct: 505 ggagaatgttctaaccgtagaaggtacca 477

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  289 bits (146), Expect = 2e-75
 Identities = 194/209 (92%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    taaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcg 61
            |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1534 taaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtca 1476

                                                                        
Query: 62   ctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggc 121
            ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |||
Sbjct: 1475 ctcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggc 1416

                                                                        
Query: 122  aaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtat 181
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 aaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtat 1356

                                         
Query: 182  ggagaattttctaaccgtanaaggaacca 210
            ||||||| ||||||||||| |||| ||||
Sbjct: 1355 ggagaatgttctaaccgtagaaggtacca 1327

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  250 bits (126), Expect = 1e-63
 Identities = 176/192 (91%), Gaps = 2/192 (1%)
 Strand = Plus / Minus

                                                                        
Query: 19   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 78
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 79   gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 138
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

                                                                        
Query: 139  tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 198
            |||||||||||||||||||||||||||||||||||  ||||||| ||| | |||||||||
Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttctaaccg 1350

                        
Query: 199  tanaaggaacca 210
            || |||||||||
Sbjct: 1349 tagaaggaacca 1338

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 2e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 19   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 78
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 79   gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 138
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 139  tcctttacc 147
            |||||||||
Sbjct: 1369 tcctttacc 1361

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 88   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 144
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 145  acctcctcct 154
             |||||||||
Sbjct: 1394 ccctcctcct 1385

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 88   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 144
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 145  acctcctcct 154
             |||||||||
Sbjct: 1432 ccctcctcct 1423

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 88   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 144
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 145  acctcctcct 154
             |||||||||
Sbjct: 1431 ccctcctcct 1422

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 88   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 144
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 145  acctcctcct 154
             |||||||||
Sbjct: 1215 ccctcctcct 1206

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 6e-29
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 88   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 144
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 145  acctcctcct 154
             |||||||||
Sbjct: 1436 ccctcctcct 1427

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 28     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 88     ggcattttggtcggtgcaaccttccggcacgggca 122
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 46     gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 105
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 106    accttccggcacggg 120
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 28    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 88    ggcattttggtcggtgcaaccttccggcacgggca 122
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 46    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 105
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 106   accttccggcacggg 120
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 88   ggcattttggtcggtgcaaccttccggcacgggca 122
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 88   ggcattttggtcggtgcaaccttccggcacgggca 122
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 28       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 88       ggcattttggtcggtgcaaccttccggcacgggca 122
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 46       gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 105
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 106      accttccggcacggg 120
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 28       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 88       ggcattttggtcggtgcaaccttccggcacgggca 122
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 46       gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 105
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 106      accttccggcacggg 120
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 88   ggcattttggtcggtgcaaccttccggcacgggca 122
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 9e-25
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 34  aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 93
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 94  ttggtcggtgcaaccttccggcacgggca 122
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 4e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 28   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 88   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 144
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 145  acctcctcct 154
             |||||||||
Sbjct: 1443 ccctcctcct 1434

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 8e-19
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 88  ggcattttggtcggtgcaaccttccggcacgggca 122
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 28      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 88      ggcattttggtcggtgcaaccttccggcacgggca 122
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 28    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 87
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 88    ggcattttggtcggtgcaaccttccggcacgggca 122
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 38   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 97
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 98   tcggtgcaaccttc 111
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 38   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 97
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 98   tcggtgcaaccttc 111
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 38   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 97
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 98   tcggtgcaaccttc 111
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 38   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 97
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 98   tcggtgcaaccttc 111
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 173 ggtgtgtatggagaattttctaaccgtanaaggaacca 210
           |||||||||||||||| ||||||||||| |||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaacca 271

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 4       aaacatcagatattaaaagtg 24
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   atgcagcaagagatggtgggt 175
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 4       aaacatcagatattaaaagtg 24
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      aaacatcagatattaaaagtg 24
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cctttacctcctcctatgca 159
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 140  cctttacctcctcctatgca 159
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cctttacctcctcctatgca 159
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      tcagatattaaaagtggcat 28
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      tcagatattaaaagtggcat 28
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     tcagatattaaaagtggcat 28
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 37   ggtgtaaaggcagctgccgtcgtcgctc 64
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cctttacctcctcctatgca 159
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tggcatgcttaaaaggtgta 42
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 129 cttgctgtgctcctttacctcctc 152
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   cctttacctcctcctatgca 159
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 8      atcagatattaaaagtggcatgct 31
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,640,809
Number of Sequences: 3902068
Number of extensions: 1640809
Number of successful extensions: 132321
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132060
Number of HSP's gapped (non-prelim): 232
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---