>Y112_MYCMS (Q6MUC0) UPF0078 membrane protein MSC_0112|
          Length = 258

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 89  RDEIILSWCNSGHYWFPEKWSGAII 15
           ++ I+ S  NS HYWF   W+  I+
Sbjct: 193 KNYILFSLLNSFHYWFSNTWASGIL 217

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = -3

Query: 200 PVELKHVKKKVMSGFQCFPPLGILHTGTLL*SNNCVQRDEIILSWCNSGHYWFP 39
           P EL  +   +     C P  GI    T+L   N    D  I  W +    W P
Sbjct: 721 PQELYELTSLICELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHP 774

>PIT1_MACMU (Q28503) Pituitary-specific positive transcription factor 1 (Pit-1)|
           (Growth hormone factor 1) (GHF-1)
          Length = 291

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 32  TFLGTNSDLSYTMTKLFHHAAHNC 103
           TF+  NSD S T+  + HH+A  C
Sbjct: 11  TFIPLNSDASATLPLIMHHSAAEC 34

>PIT1_HUMAN (P28069) Pituitary-specific positive transcription factor 1 (Pit-1)|
           (Growth hormone factor 1) (GHF-1)
          Length = 291

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 32  TFLGTNSDLSYTMTKLFHHAAHNC 103
           TF+  NSD S T+  + HH+A  C
Sbjct: 11  TFIPLNSDASATLPLIMHHSAAEC 34


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,123,372
Number of Sequences: 219361
Number of extensions: 636040
Number of successful extensions: 1156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)