ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF542973.1| Triticum aestivum cyclophilin mRNA, partial cds 48 0.021
2gb|AC009346.5|AC009346 Drosophila melanogaster, chromosome 3R, r... 40 5.2
3gb|AE003602.4| Drosophila melanogaster chromosome 3R, section 6 ... 40 5.2

>gb|AF542973.1| Triticum aestivum cyclophilin mRNA, partial cds
          Length = 806

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                       
Query: 328 gaaaactagtcaccgtagctt-ccaccaaagaccattccaggtcatcacagcggcacttc 386
           ||||| ||||| | ||||||| || ||| ||||| || ||||||||| ||||||||||||
Sbjct: 746 gaaaantagtcncngtagcttcccnccagagaccgtttcaggtcatcccagcggcacttc 687



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>gb|AC009346.5|AC009346 Drosophila melanogaster, chromosome 3R, region 83A-83B, BAC clone
             BACR03P13, complete sequence
          Length = 168448

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    acaataacgaaagtgcattt 46
             ||||||||||||||||||||
Sbjct: 77667 acaataacgaaagtgcattt 77648



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>gb|AE003602.4| Drosophila melanogaster chromosome 3R, section 6 of 118 of the complete
              sequence
          Length = 326091

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     acaataacgaaagtgcattt 46
              ||||||||||||||||||||
Sbjct: 237738 acaataacgaaagtgcattt 237719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,738,923
Number of Sequences: 3902068
Number of extensions: 2738923
Number of successful extensions: 43111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43106
Number of HSP's gapped (non-prelim): 4
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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