| Clone Name | rbags35e02 |
|---|---|
| Clone Library Name | barley_pub |
>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 517 Score = 54.7 bits (130), Expect = 1e-07 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 5/74 (6%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKE-HGKLLKDFSKGLVNNKDIEN----LKVEVEKFALS 325 E+DF ++AE+ +AVTI L ++ E G LKDF + ++ I++ L+ EVE+FA Sbjct: 443 EEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQ 502 Query: 324 FDMPGFTLESMKYK 283 F GF E+MKYK Sbjct: 503 FPTIGFEKETMKYK 516
>GLYC_CAEEL (P50432) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (Glycine hydroxymethyltransferase) (SHMT) (Glycosylation-related protein 1) Length = 507 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHGKLLKDFSKGLVNN----KDIENLKVEVEKFALSF 322 E+DFE++ +F+H+ V I E GK LKDF N KD+ +L VE+F+ F Sbjct: 440 EQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKF 499 Query: 321 DMPG 310 ++PG Sbjct: 500 EIPG 503
>GLYC_HUMAN (P34896) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 483 Score = 48.1 bits (113), Expect = 1e-05 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 5/65 (7%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHG--KLLKDFSKGLVNNK---DIENLKVEVEKFALS 325 EKDF+++A F+H+ + + L IQ + G LK+F + L +K ++ L+ EVE FA Sbjct: 415 EKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASL 474 Query: 324 FDMPG 310 F +PG Sbjct: 475 FPLPG 479
>GLYM_PEA (P34899) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEH-GKLLKDFSKGLVNNK----DIENLKVEVEKFALS 325 E+DF ++AE+ AV++ L ++ E G LKDF + L + +I LK +VE+FA Sbjct: 444 EEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQ 503 Query: 324 FDMPGFTLESMKYKE 280 F GF +MKY + Sbjct: 504 FPTIGFEKATMKYNK 518
>GLYM_SOLTU (P50433) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 518 Score = 46.6 bits (109), Expect = 4e-05 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKE-HGKLLKDFSKGLVNN----KDIENLKVEVEKFALS 325 E+DF ++A+F AV I + ++ E G LKDF L ++ +I L+ +VE++A Sbjct: 444 EEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQ 503 Query: 324 FDMPGFTLESMKYK 283 F GF E+MKYK Sbjct: 504 FPTIGFEKETMKYK 517
>GLYC_MOUSE (P50431) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 478 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 6/66 (9%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHG--KLLKDFSKGLVNNKDIEN----LKVEVEKFAL 328 E+DF+++A F+H+ + + L IQ LK+F + L ++ I++ L+ EVE FA Sbjct: 409 EEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFAS 468 Query: 327 SFDMPG 310 +F +PG Sbjct: 469 NFSLPG 474
>GLYC_RABIT (P07511) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 483 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHG--KLLKDFSKGLV----NNKDIENLKVEVEKFAL 328 EKDF+++A F+H+ + + + IQ + G LK+F + L + + + L+ EVE FA Sbjct: 414 EKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAA 473 Query: 327 SFDMPG 310 F +PG Sbjct: 474 LFPLPG 479
>GLYM_HUMAN (P34897) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 504 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKD----IENLKVEVEKFALSF 322 E DF ++ +F+ + V I L ++ + KL +DF L+ + + + NL+ VE+FA +F Sbjct: 438 EDDFRRVVDFIDEGVNIGLEVKSKTAKL-QDFKSFLLKDSETSQRLANLRQRVEQFARAF 496 Query: 321 DMPGF 307 MPGF Sbjct: 497 PMPGF 501
>GLYC_SHEEP (P35623) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 483 Score = 42.0 bits (97), Expect = 9e-04 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHG--KLLKDFSKGLV----NNKDIENLKVEVEKFAL 328 E+DF ++A F+H+ + + L IQ G LK+F + L + + + L+ EVE FA Sbjct: 414 EEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFAT 473 Query: 327 SFDMPG 310 F +PG Sbjct: 474 LFPLPG 479
>GLYM_CANAL (O13425) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 493 Score = 35.0 bits (79), Expect = 0.11 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = -3 Query: 486 KDFEQIAEFLHQAVTICLNIQ-KEHGK----LLKDFSKGLVNNKDIENLKVEVEKFALSF 322 ++F+++AEF+ QAV I + ++ +E GK LL F K + ++ L EV + + Sbjct: 428 EEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKY 487 Query: 321 DMPG 310 +PG Sbjct: 488 PVPG 491
>GLYD_SCHPO (O13972) Probable serine hydroxymethyltransferase, cytosolic (EC| 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 467 Score = 34.3 bits (77), Expect = 0.19 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHGK---LLKDFSKGLVNNK---DIENLKVEVEKFAL 328 E+DF ++ +++ +A+T N+QKE K LKDF L + ++ L+ EV ++A Sbjct: 400 EQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWAS 459 Query: 327 SFDM 316 SF + Sbjct: 460 SFPL 463
>G6PI_MOUSE (P06745) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) (Neuroleukin) (NLK) Length = 557 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = -3 Query: 435 LNIQKEHGKLLKDFSKGLVNNKDIENLKVEVEK 337 LN+ HG +L D+SK LV NK++ + VE+ K Sbjct: 41 LNLNTNHGHILVDYSKNLV-NKEVMQMLVELAK 72
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = +3 Query: 378 SPGPWRSP*AASRAPS-GCSGRWS----LPGGGTRRSARSPS 488 SPGP R+P + S S GC GR S LP GG + +RS S Sbjct: 391 SPGPVRAPLSRSHTLSGGCGGRGSKVALLPAGGALQHSRSMS 432
>MRC1_SCHPO (Q9P7T4) Mediator of replication checkpoint protein 1 (DNA| replication checkpoint mediator mrc1) Length = 1019 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 432 NIQKEHGKLLKDFSKGLVNNKDIENLKVEVEKFAL 328 N++KE K D S G+VN++DI+ L VE + L Sbjct: 271 NVEKEEPKPSVDRSTGIVNSEDIKELSVEDDSLEL 305
>GLYC_SCHPO (Q10104) Probable serine hydroxymethyltransferase, cytosolic (EC| 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 472 Score = 31.2 bits (69), Expect = 1.6 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQ----KEHGKLLKDFSKGLVNN----KDIENLKVEVEKF 334 EKDFE++ E + + V++ I KE +DF K V + +I LK EV + Sbjct: 406 EKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDF-KAYVGDGSKFSEIAKLKKEVITW 464 Query: 333 ALSFDMP 313 A FD P Sbjct: 465 AGKFDFP 471
>GLYM_CANGA (Q6FQ44) Serine hydroxymethyltransferase, mitochondrial precursor| (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 485 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHGKLLKD-------FSKGLVNNKDIENLKVEVEKFA 331 E+DF+++AE++ AV + + ++ + KD F + ++ ++ L EV + Sbjct: 417 EQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWV 476 Query: 330 LSFDMPG 310 +F +PG Sbjct: 477 GTFPVPG 483
>MEF2B_HUMAN (Q02080) Myocyte-specific enhancer factor 2B (Serum response| factor-like protein 2) (XMEF2) (RSRFR2) Length = 365 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +3 Query: 360 SQCPCCSPGPWRSP*AASRAPSGCSGRWSLPGGGTR 467 S PC SPGPW+S +GC W G G R Sbjct: 300 SPIPCSSPGPWQSLCGLGPPCAGCP--WPTAGPGRR 333
>VGLB_HSVA1 (Q04463) Glycoprotein B precursor| Length = 933 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 378 SPGPWRSP*AASRAPSGCSGRW-SLPGGGTRRSAR 479 SPGP R P R P G SGR PG GTR +AR Sbjct: 84 SPGPDRPP----RGPGGGSGRRRGSPGNGTRSAAR 114
>CD2A2_MONDO (O77618) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)| Length = 155 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +3 Query: 327 RGQTSRPRP*GS------QCPCCSPGPWRSP*AASRAPSGCSGRWSLPGGGTRRSARSP 485 RG T PRP +CP PG + + R +GC G P G RR R+P Sbjct: 76 RGGTQHPRPDNPHPASPRRCPGGLPGHSDAA-PSGRGAAGCQGLLGSPACGPRRGTRTP 133
>TGT_PROMP (Q7TUG0) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 372 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/79 (22%), Positives = 34/79 (43%) Frame = -3 Query: 489 EKDFEQIAEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKVEVEKFALSFDMPG 310 E D E E H + C+ ++ + L G+V L+ KF SFD+PG Sbjct: 155 ENDIEDSLERTHSWLQKCVETHQKSNQALF----GIVQGGKYPRLREHSAKFTSSFDLPG 210 Query: 309 FTLESMKYKE*DDDTYAMV 253 + + E ++ ++++ Sbjct: 211 IAVGGVSVGEAVEEIHSVI 229
>GP135_HUMAN (Q8IZ08) Probable G-protein coupled receptor 135| Length = 494 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 351 P*GSQCPCCSPGPWRSP*AASRAPSGCSG 437 P G P + GPWR AASR S C G Sbjct: 167 PPGGSAPAAAAGPWRGFCAASRFFSSCFG 195
>MURC_CAMJR (Q5HU47) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 431 Score = 29.6 bits (65), Expect = 4.6 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = -3 Query: 468 AEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKVEVEKFA--LSF---DMPGFT 304 AEFL A +N + E K K+ S L +KDI+N + +E F SF D+ F Sbjct: 193 AEFLDTAKIRVINAEDEFLKNYKNESTKLYPSKDIKNCTMRIENFKPFTSFELKDLGEFK 252 Query: 303 LESMKYKE*DDDTYAMVVSL 244 + M Y D + A++ +L Sbjct: 253 VFGMGYHLALDASLAILAAL 272
>K0174_HUMAN (P53990) Protein KIAA0174 (Putative MAPK-activating protein PM28)| Length = 364 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 474 QIAEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKVE 346 ++AE A +C KE+GKL + G VN++ + L VE Sbjct: 113 EVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVE 155
>K0174_MOUSE (Q9CX00) Protein KIAA0174| Length = 362 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 474 QIAEFLHQAVTICLNIQKEHGKLLKDFSKGLVNNKDIENLKVE 346 ++AE A +C KE+GKL + G VN++ + L VE Sbjct: 113 EVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVE 155
>UCP2_CYPCA (Q9W725) Mitochondrial uncoupling protein 2 (UCP 2)| Length = 310 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = -1 Query: 173 SPG*FCKRLPPLVLCLPSTSPSYFFVGIV----RVGSWNV 66 +PG +C L V L P F+ G + R+GSWNV Sbjct: 247 APGQYCSALNCAVAMLTKEGPKAFYKGFMPSFLRLGSWNV 286
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 29.3 bits (64), Expect = 6.0 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Frame = +3 Query: 324 RRGQTSRPRP*GSQC----PCCSPGPWRSP*------AASRAPSGCSGRWSLPGGGTRRS 473 RR S PRP P P P R+P A +RAP+GCS P T R Sbjct: 260 RRTTPSAPRPSSRPARPPIPAARPPPRRTPGTPRPAAARARAPAGCSPARRTPSAPTDRR 319 Query: 474 ARS 482 R+ Sbjct: 320 CRA 322
>GRPE_CHLMU (P23575) Protein grpE (HSP-70 cofactor)| Length = 190 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 462 FLHQAVTICLNIQKEHGKLLKDFSKGL-VNNKDIENLKVEVEKF 334 +LH+AV I G +L++F+KG + ++ I KV+V KF Sbjct: 134 YLHEAVEIEETTDIPEGTILEEFTKGYKIGDRPIRVAKVKVAKF 177
>G6PI_CRIGR (P50309) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 558 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -3 Query: 435 LNIQKEHGKLLKDFSKGLVNNKDIENLKVEVEK 337 LN+ HG +L D+SK LV NK++ + V++ + Sbjct: 42 LNLNTTHGHILVDYSKNLV-NKEVMQMLVDLAR 73
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/51 (41%), Positives = 25/51 (49%) Frame = +3 Query: 333 QTSRPRP*GSQCPCCSPGPWRSP*AASRAPSGCSGRWSLPGGGTRRSARSP 485 +TSRP P GS P S GP+ S S A + CS P GT + SP Sbjct: 765 ETSRPSPLGSYSPVRSAGPFGSS-TDSSASTSCS---PPPEQGTAADSVSP 811
>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor| Length = 674 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +3 Query: 321 QRRGQTSRPRP*GSQCPCCSPGPWRSP*AASRAPSGCSGRWSLPGGGT 464 Q RG+ P P G P PGP P S P G G PG T Sbjct: 50 QMRGEQGPPGPPGPIGPRGQPGPAGKPGFGSPGPQGPPGPLGPPGFST 97
>COX10_CANGA (Q6FUG4) Protoheme IX farnesyltransferase, mitochondrial precursor| (EC 2.5.1.-) (Heme O synthase) Length = 451 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 46 KIIGKYSTFHDPTRTIPTKKYDGDVDGKQS 135 K+IGKYS H+ TR I + Y + K + Sbjct: 24 KVIGKYSAIHEATRKIIVRSYSKETIKKHN 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,170,059 Number of Sequences: 219361 Number of extensions: 1518210 Number of successful extensions: 5055 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5043 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)