ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34o13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009554.1| Triticum aestivum clone wre1.pk0001.d8:fis, full ... 103 3e-19
2gb|BT009107.1| Triticum aestivum clone wkm2n.pk009.f17:fis, full... 96 6e-17
3dbj|AB089942.1| Triticum aestivum Tad1 mRNA for defensin, comple... 80 4e-12
4ref|XM_466875.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-05
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
6dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
7dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
8gb|BT009167.1| Triticum aestivum clone wl1n.pk0096.c8:fis, full ... 42 0.83
9gb|BT009066.1| Triticum aestivum clone wem1c.pk001.k1:fis, full ... 42 0.83
10gb|BT008931.1| Triticum aestivum clone wde2f.pk001.g2:fis, full ... 42 0.83
11gb|AY109044.1| Zea mays PCO090777 mRNA sequence 42 0.83
12emb|CR352218.7| Zebrafish DNA sequence from clone DKEYP-118G5 in... 40 3.3
13gb|BC035081.1| Homo sapiens cDNA clone IMAGE:5260685 40 3.3
14gb|AC099569.2| Homo sapiens chromosome 1 clone RP5-1007M22, comp... 40 3.3
15gb|AC026184.3|AC026184 Homo sapiens chromosome 3 clone RP11-291P... 40 3.3
16gb|AC023473.3|AC023473 Homo sapiens chromosome 3 clone RP11-194I... 40 3.3
17gb|AC018504.4|AC018504 Homo sapiens chromosome 3 clone RP11-53E1... 40 3.3
18gb|AC077690.2| Homo sapiens chromosome 3 clone RP11-329A2 map 3p... 40 3.3
19gb|AC068313.5| Homo sapiens chromosome 3 clone RP11-157E16 map 3... 40 3.3 
>gb|BT009554.1| Triticum aestivum clone wre1.pk0001.d8:fis, full insert mRNA
           sequence
          Length = 631

 Score =  103 bits (52), Expect = 3e-19
 Identities = 58/60 (96%)
 Strand = Plus / Minus

                                                                       
Query: 191 tagcaggtccgcttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 tagcaggtccgcttgcagaagcacttgcgctcgaggcggtgggagttgcactcgccgtcg 245



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 93  acctncggatgcatggagatgaaccattatt 123
           |||| ||||||||||||||||||||||||||
Sbjct: 458 acctccggatgcatggagatgaaccattatt 428
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>gb|BT009107.1| Triticum aestivum clone wkm2n.pk009.f17:fis, full insert mRNA
           sequence
          Length = 629

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                       
Query: 191 tagcaggtccgcttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
           |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 358 tagcaggtgcgcttgcagaagcacttgcgctcgaggcggtgggagttgcactcgccgtcg 299
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>dbj|AB089942.1| Triticum aestivum Tad1 mRNA for defensin, complete cds
          Length = 682

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                       
Query: 191 tagcaggtccgcttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
           |||||||||||||||||||||||||| ||||||| | |||| | ||||||||||||||||
Sbjct: 347 tagcaggtccgcttgcagtagcacttgcgctcgacgaggtgcgtgttgcactcgccgtcg 288
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>ref|XM_466875.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 603

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 202 cttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
           ||||||| ||||||| |||||||||| ||| || |||||||||||||||
Sbjct: 319 cttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgtcg 271
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                                 
Query: 202      cttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
                ||||||| ||||||| |||||||||| ||| || |||||||||||||||
Sbjct: 25209397 cttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgtcg 25209349
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1469H02
          Length = 136602

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                               
Query: 202    cttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
              ||||||| ||||||| |||||||||| ||| || |||||||||||||||
Sbjct: 109790 cttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgtcg 109742
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>dbj|AK121915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C08, full
           insert sequence
          Length = 603

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 202 cttgcagtagcactttcgctcgaggcggtgggagttgcactcgccgtcg 250
           ||||||| ||||||| |||||||||| ||| || |||||||||||||||
Sbjct: 319 cttgcagaagcacttgcgctcgaggccgtgcgacttgcactcgccgtcg 271
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>gb|BT009167.1| Triticum aestivum clone wl1n.pk0096.c8:fis, full insert mRNA
           sequence
          Length = 630

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 190 ctagcaggtccgcttgcagtagcactttcgctc 222
           ||||||| |||||||||||| |||||| |||||
Sbjct: 350 ctagcagatccgcttgcagtggcacttgcgctc 318
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>gb|BT009066.1| Triticum aestivum clone wem1c.pk001.k1:fis, full insert mRNA
           sequence
          Length = 635

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 199 ccgcttgcagtagcactttcgctcgaggcggtgggagttgcactcgccg 247
           ||||| |||||||||||| ||||||| | |||| | |||||||| ||||
Sbjct: 394 ccgctcgcagtagcacttgcgctcgacgtggtgcgtgttgcactggccg 346
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>gb|BT008931.1| Triticum aestivum clone wde2f.pk001.g2:fis, full insert mRNA
           sequence
          Length = 557

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 199 ccgcttgcagtagcactttcgctcgaggcggtg 231
           ||||| |||||||||||| ||||||||| ||||
Sbjct: 287 ccgctcgcagtagcacttgcgctcgaggtggtg 255
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>gb|AY109044.1| Zea mays PCO090777 mRNA sequence
          Length = 796

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 190 ctagcaggtccgcttgcagtagcactttcgctc 222
           ||||||| |||||||||||| |||||| |||||
Sbjct: 365 ctagcagatccgcttgcagtggcacttgcgctc 333
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>emb|CR352218.7| Zebrafish DNA sequence from clone DKEYP-118G5 in linkage group 23,
             complete sequence
          Length = 124382

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   cattattatttattctgaacggaa 140
             |||||||||| |||||||||||||
Sbjct: 38779 cattattattgattctgaacggaa 38756
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>gb|BC035081.1| Homo sapiens cDNA clone IMAGE:5260685
          Length = 2198

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 cattattatttattctgaacggaa 140
           ||||||| ||||||||||||||||
Sbjct: 675 cattattgtttattctgaacggaa 698
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>gb|AC099569.2| Homo sapiens chromosome 1 clone RP5-1007M22, complete sequence
          Length = 126833

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   cattattatttattctgaacggaa 140
             ||||||| ||||||||||||||||
Sbjct: 86171 cattattgtttattctgaacggaa 86194
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>gb|AC026184.3|AC026184 Homo sapiens chromosome 3 clone RP11-291P21 map 3p, complete sequence
          Length = 179563

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  atgaaccattattatttatt 130
            ||||||||||||||||||||
Sbjct: 2010 atgaaccattattatttatt 2029
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>gb|AC023473.3|AC023473 Homo sapiens chromosome 3 clone RP11-194I5 map 3p, complete sequence
          Length = 152246

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   atgaaccattattatttatt 130
             ||||||||||||||||||||
Sbjct: 98355 atgaaccattattatttatt 98374
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>gb|AC018504.4|AC018504 Homo sapiens chromosome 3 clone RP11-53E12 map 3p, complete sequence
          Length = 178133

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   atgaaccattattatttatt 130
             ||||||||||||||||||||
Sbjct: 15205 atgaaccattattatttatt 15224
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>gb|AC077690.2| Homo sapiens chromosome 3 clone RP11-329A2 map 3p, complete sequence
          Length = 199979

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    atgaaccattattatttatt 130
              ||||||||||||||||||||
Sbjct: 185144 atgaaccattattatttatt 185163
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>gb|AC068313.5| Homo sapiens chromosome 3 clone RP11-157E16 map 3p, complete sequence
          Length = 183807

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   atgaaccattattatttatt 130
             ||||||||||||||||||||
Sbjct: 59061 atgaaccattattatttatt 59080


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,680,409
Number of Sequences: 3902068
Number of extensions: 1680409
Number of successful extensions: 31324
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31269
Number of HSP's gapped (non-prelim): 55
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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