ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35d10 |
|---|---|
| Clone Library Name | barley_pub |
>ATM_SCHPO (O74630) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel1) (Telomere length regulation protein 1) (ATM homolog) Length = 2812 Score = 33.1 bits (74), Expect = 0.36 Identities = 26/80 (32%), Positives = 38/80 (47%) Frame = -3 Query: 420 QSAEMNTVSSEDNVAPAEGPAESQEQREELSADKIRDVIAPVKKSINQLIKSQGRSVWWL 241 Q+ E +++ E V+ +E SQ+ +E+S K DVI VK+ + +LI V W Sbjct: 159 QAIEKLSIAEETYVSDSEEEPISQKNYQEISIWKSHDVIR-VKQEVVELIYVMRSLVQWY 217 Query: 240 AYIAVVTSWPLLGTLGFFLY 181 A S LL FF Y Sbjct: 218 AAPINFVSEQLLKFFEFFFY 237
>MEU15_SCHPO (Q96WS6) Meiotic expression up-regulated protein 15| Length = 150 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 306 IAPVKKSINQLIKSQGRSVWWLAYIAVV-TSWPLLGTLGFFLYRKKFRNSSPAKWL 142 + P + ++ K S WWL IA++ T W LLG L F + + P KW+ Sbjct: 20 VKPQVLPLEEIKKIYKISYWWLCSIALIQTWWVLLGLLPIFFALEHY--EVPYKWI 73
>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) (Vegetative protein 15) (VEG15) Length = 704 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -3 Query: 333 LSADKIRDVIAPVKKSINQLIKSQG 259 ++ DKIRDVI P K IN++I+ G Sbjct: 560 INPDKIRDVIGPSGKQINKIIEETG 584
>HSP71_DROME (P02825) Major heat shock 70 kDa protein Ab (Heat shock protein| 70Ab) (HSP70-87A7) Length = 642 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>HSP70_DROME (P82910) Major heat shock 70 kDa protein Aa (Heat shock protein| 70Aa) (HSP70-87A7) Length = 642 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>KIF6_HUMAN (Q6ZMV9) Kinesin-like protein KIF6| Length = 814 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQEQREELSADKIRDVIAPVKKSINQLI 271 ++L ++ + E NTVSSE + P + +E R K+RD++ IN L+ Sbjct: 429 KKLLNDKKILENNTVSSESKDQDCQEPLKEEEYR------KLRDILKQRDNEINILV 479
>HSP71_DROSI (Q9GSU7) Major heat shock 70 kDa protein Ab (Heat shock protein| Hsp70Ab) (HSP70-87C1) Length = 644 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>HSP75_DROME (Q9BIR7) Major heat shock 70 kDa protein Bc (Heat shock protein| 70Bc) (HSP70-87C1) Length = 641 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>HSP74_DROME (Q9VG58) Major heat shock 70 kDa protein Bbb (Heat shock protein| 70Bbb) (HSP70-87C1) Length = 641 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>HSP73_DROME (Q9BIS2) Major heat shock 70 kDa protein Bb (Heat shock protein| 70Bb) (HSP70-87C1) Length = 641 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>HSP72_DROME (Q8INI8) Major heat shock 70 kDa protein Ba (Heat shock protein| 70Ba) (HSP70-87C1) Length = 641 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = -3 Query: 441 RRLHDESQSAEMNTVSSEDNVAPAEGPAESQE--------QREELSADKIRDVIAPVKKS 286 RRL ++ A+ SS + + E Q+ + EEL AD R+ + PV+K+ Sbjct: 259 RRLRTAAERAKRTLSSSTEATIEIDALFEGQDFYTKVSRARFEELCADLFRNTLQPVEKA 318 Query: 285 INQLIKSQGR 256 +N +G+ Sbjct: 319 LNDAKMDKGQ 328
>DPO3B_BUCBP (Q89B36) DNA polymerase III beta subunit (EC 2.7.7.7)| Length = 371 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 256 PPLGFNELVNGFLNGSNDISDFICRELFSLLLRLCRAF 369 P L +E N F+ ND+ D +C FS+ ++ R F Sbjct: 117 PNLKISENQNNFVISQNDLKDVLCATYFSMAIQDLRNF 154
>FCR1_CANAL (O93870) Fluconazole resistance protein 1| Length = 517 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/57 (22%), Positives = 28/57 (49%) Frame = -3 Query: 429 DESQSAEMNTVSSEDNVAPAEGPAESQEQREELSADKIRDVIAPVKKSINQLIKSQG 259 D+ + E + + + A + + S + +++ V+AP+ K ++ LIK QG Sbjct: 99 DDIITEEKSVDQEKSSPASSTPNSSSSDHHDDVEEQNSTGVVAPINKVVSYLIKEQG 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,870,510 Number of Sequences: 219361 Number of extensions: 991351 Number of successful extensions: 2780 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2779 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
