ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 640 e-180
2ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 170 3e-39
3gb|AY104294.1| Zea mays PCO116917 mRNA sequence 168 1e-38
4dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 165 2e-37
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 74 5e-10
7emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.031
8gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP... 46 0.12
9ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.12
10ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.12
11gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.12
12gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.12
13gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.12
14gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.12
15gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.12
16dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds 46 0.12
17gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.49
18gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.49
19gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.49
20dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.49
21emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.49
22gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 1.9
23gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 42 1.9
24gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, comple... 42 1.9
25emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chr... 42 1.9
26gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 7.7
27gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 7.7
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.7
29gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, com... 40 7.7
30gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 7.7
31gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.7
32emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chro... 40 7.7
33gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, comp... 40 7.7
34emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 7.7
35gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 7.7
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
37gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 7.7
38gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 7.7
39gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 40 7.7
40emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 40 7.7 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  640 bits (323), Expect = e-180
 Identities = 494/544 (90%), Gaps = 11/544 (2%)
 Strand = Plus / Minus

                                                                        
Query: 26   tattacagtggcaacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-c 83
            ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||  |
Sbjct: 1320 tattacagtggcaacagctaaaaattgcctaccc-tattgtacaccctcggttctttttc 1262

                                                                        
Query: 84   atcgaactgcgacgtagtaactctgtcagaagctattcaaaaccctgttctggcatatct 143
             | ||||||| ||||||||| |||||||||||||| |||||| |||| | ||| ||||||
Sbjct: 1261 gtagaactgcaacgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatct 1203

                                                                        
Query: 144  tgatgagtacaaaaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnn 203
             ||||||| ||||| ||||||||| |||||||  |  |||||||||||||||||      
Sbjct: 1202 ggatgagtgcaaaagttacaattctttttctttcca-tgatgcagtgtcggctgttt--- 1147

                                                                        
Query: 204  nactgaagaatgct--acagtggctggtgacaaggggtggctgaagtccccactcatgct 261
             |||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1146 -actgaagaatgctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgct 1088

                                                                        
Query: 262  gcctgcagaacttctcccccgcctctcgccgagtcgtatgggagcgcgctgagcaccttc 321
            |||||||||||||||||||| |||||||| |||||||| || |||| ||| |||||||||
Sbjct: 1087 gcctgcagaacttctccccctcctctcgcggagtcgtacggaagcgtgctcagcaccttc 1028

                                                                        
Query: 322  acccggaacatggccttcttgtctgaaccaaactcgatggcatccgaagggtgaaaacga 381
            |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 1027 acccggaacatggccttcttgtctgagccaaattcgatggcatcggaagggtggaaacga 968

                                                                        
Query: 382  accgggaagtttggaggtaaccggtagcgcctaccttcgttgtcattaaaccatgtaccg 441
            || |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 967  actgggaagtttggaggtaaccggtagcgtctgccttcgttgtcgttaaaccatgtaccg 908

                                                                        
Query: 442  tgctcgcttccgagatcggtcaaatagaaacccttgttcttgcatgtgatagtagcatgg 501
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 907  tgctcgcttcccagatcggtcaaatagaaacccttattcttgcatgtgatagtagcatgg 848

                                                                        
Query: 502  atctctgatacttgtggcaagggcaacgacaacgaagaatcagaattgctcggatctggt 561
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 847  atctctgatacttgtggcaaggggaacgacaacgaagaatcagaattgctcggatctggt 788

                
Query: 562  ttgc 565
            ||||
Sbjct: 787  ttgc 784
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>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score =  170 bits (86), Expect = 3e-39
 Identities = 194/230 (84%)
 Strand = Plus / Minus

                                                                        
Query: 298  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 357
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 1916 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 1857

                                                                        
Query: 358  atggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgcctacct 417
            ||||||||||| || || ||||| || |||||||| |||||||  || ||||| ||||||
Sbjct: 1856 atggcatccgagggatggaaacggacagggaagttcggaggtacgcgatagcgtctacct 1797

                                                                        
Query: 418  tcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaacccttg 477
            ||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  |||| 
Sbjct: 1796 tcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctta 1737

                                                              
Query: 478  ttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 527
            |||||||||||||||||||||||| | |||||||  ||||||||||||||
Sbjct: 1736 ttcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaa 1687
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>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score =  168 bits (85), Expect = 1e-38
 Identities = 196/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 295 tcgtatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaac 354
           ||||||||||||| | | |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 914 tcgtatgggagcgtgttcagcaccttcacccggaacatagccttcttatcggaaccaaac 855

                                                                       
Query: 355 tcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgccta 414
           || ||| |||| ||||| || |||||||||||||||||||| || |  ||||| || |||
Sbjct: 854 tcaatgacatcggaaggatggaaacgaaccgggaagtttggtggcacgcggtaacgtcta 795

                                                                       
Query: 415 ccttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccc 474
           ||||| |||||  ||| ||| ||||| || || || |||||||| |||| ||||||| ||
Sbjct: 794 ccttcattgtcggtaatccaggtaccatgttcactcccgagatcagtcagatagaaagcc 735

                                                                
Query: 475 ttgttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 527
           || |||||||| ||||||||||||||  | |||||||  ||||| ||||||||
Sbjct: 734 ttattcttgcacgtgatagtagcatgcctttctgatatctgtggaaagggcaa 682
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>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score =  165 bits (83), Expect = 2e-37
 Identities = 195/231 (84%), Gaps = 1/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 298  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 357
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 2109 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 2050

                                                                        
Query: 358  atggcatccgaagggtgaaaacgaaccgggaagtttggaggta-accggtagcgcctacc 416
            ||||||||||| || || ||||| || |||||||| |||||||  ||| ||||| |||||
Sbjct: 2049 atggcatccgagggatggaaacggacagggaagttcggaggtacgccgatagcgtctacc 1990

                                                                        
Query: 417  ttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccctt 476
            |||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  ||||
Sbjct: 1989 ttcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctt 1930

                                                               
Query: 477  gttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 527
             |||||||||||||||||||||||| | |||||||  ||||||||||||||
Sbjct: 1929 attcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaa 1879
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 343      tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 402
                |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 22350882 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 22350823

                                     
Query: 403      cggtagcgcctaccttcgttg 423
                || ||||| ||||||||||||
Sbjct: 22350822 cgatagcgtctaccttcgttg 22350802



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 473      ccttgttcttgcatgtgatagtagcatggatctctgata 511
                |||| |||||||||||||||||||||||| | |||||||
Sbjct: 22350662 ccttattcttgcatgtgatagtagcatggttttctgata 22350624



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 298      tatgggagcgcgctgagcaccttcacccggaacatggcct 337
                |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 22351048 tatgggagcgtgctcagcaccttcacacggaacacggcct 22351009



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 35       ggcaacagctaaaattgcctacccctattg 64
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 343    tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 402
              |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 101786 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 101727

                                   
Query: 403    cggtagcgcctaccttcgttg 423
              || ||||| ||||||||||||
Sbjct: 101726 cgatagcgtctaccttcgttg 101706



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 473    ccttgttcttgcatgtgatagtagcatggatctctgata 511
              |||| |||||||||||||||||||||||| | |||||||
Sbjct: 101566 ccttattcttgcatgtgatagtagcatggttttctgata 101528



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 298    tatgggagcgcgctgagcaccttcacccggaacatggcct 337
              |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 101952 tatgggagcgtgctcagcaccttcacacggaacacggcct 101913



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 35     ggcaacagctaaaattgcctacccctattg 64
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 140    atcttgatgagtacaaaaattacaattc 167
              |||||||||||||||||||| |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
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>gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2162

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 1982 gccttcttatctgaaccaaactcgatg 1956
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>ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.1 mRNA,
            complete cds
          Length = 2373

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.2 mRNA,
            complete cds
          Length = 2377

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2066 gccttcttatctgaaccaaactcgatg 2040
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>gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2297

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 1996 gccttcttatctgaaccaaactcgatg 1970
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>gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2520

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2209 gccttcttatctgaaccaaactcgatg 2183
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>gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2314

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2002 gccttcttatctgaaccaaactcgatg 1976
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>gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2121 gccttcttatctgaaccaaactcgatg 2095
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>gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase mRNA, complete cds
          Length = 2323

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2057 gccttcttatctgaaccaaactcgatg 2031
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>dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gccttcttgtctgaaccaaactcgatg 360
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 154    aaaaattacaattccttttctt 175
              ||||||||||||||||||||||
Sbjct: 132787 aaaaattacaattccttttctt 132766
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>gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) gene, complete cds
          Length = 3605

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 335  ccttcttgtctgaaccaaactcgatg 360
            ||||||| ||||||||||||||||||
Sbjct: 3238 ccttcttatctgaaccaaactcgatg 3213
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>gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds
          Length = 4807

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 335  ccttcttgtctgaaccaaactcgatg 360
            ||||||| ||||||||||||||||||
Sbjct: 3745 ccttcttatctgaaccaaactcgatg 3720
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>dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10
          Length = 31132

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 335   ccttcttgtctgaaccaaactcgatg 360
             ||||||| ||||||||||||||||||
Sbjct: 26568 ccttcttatctgaaccaaactcgatg 26593
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>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 154    aaaaattacaattccttttctt 175
              ||||||||||||||||||||||
Sbjct: 128657 aaaaattacaattccttttctt 128636
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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 459    ggtcaaatagaaacccttgtt 479
              |||||||||||||||||||||
Sbjct: 125779 ggtcaaatagaaacccttgtt 125799
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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     caacaatgtagtatgtatgta 21
             |||||||||||||||||||||
Sbjct: 33468 caacaatgtagtatgtatgta 33488
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>gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, complete sequence
          Length = 176044

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 480    cttgcatgtgatagtagcatg 500
              |||||||||||||||||||||
Sbjct: 158657 cttgcatgtgatagtagcatg 158637
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>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
             sequence
          Length = 219340

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   aaatagaaacccttgttcttg 483
             |||||||||||||||||||||
Sbjct: 31326 aaatagaaacccttgttcttg 31346
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 140    atcttgatgagtacaaaaattacaattc 167
              ||||||||||||| |||||| |||||||
Sbjct: 984508 atcttgatgagtataaaaataacaattc 984535
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     tcttgatgagtacaaaaatt 160
               ||||||||||||||||||||
Sbjct: 1314619 tcttgatgagtacaaaaatt 1314638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 156      aaattacaattccttttctt 175
                ||||||||||||||||||||
Sbjct: 34148352 aaattacaattccttttctt 34148371
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>gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, complete sequence
          Length = 121868

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   actgaagaatgctacagtgg 224
             ||||||||||||||||||||
Sbjct: 29954 actgaagaatgctacagtgg 29935
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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   tacccctattgtacaccctc 73
            ||||||||||||||||||||
Sbjct: 8056 tacccctattgtacaccctc 8075
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     ccttttcttggcggtgatgc 186
               ||||||||||||||||||||
Sbjct: 3710763 ccttttcttggcggtgatgc 3710744
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>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   ggaacatggccttcttgtct 345
             ||||||||||||||||||||
Sbjct: 17183 ggaacatggccttcttgtct 17164
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>gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, complete sequence
          Length = 174617

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   actgaagaatgctacagtgg 224
             ||||||||||||||||||||
Sbjct: 46165 actgaagaatgctacagtgg 46184
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     tcttgatgagtacaaaaatt 160
               ||||||||||||||||||||
Sbjct: 1327540 tcttgatgagtacaaaaatt 1327559
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>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tgtacaccctcagttctttc 82
             ||||||||||||||||||||
Sbjct: 96594 tgtacaccctcagttctttc 96613
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 156      aaattacaattccttttctt 175
                ||||||||||||||||||||
Sbjct: 34238824 aaattacaattccttttctt 34238843
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>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   tcagaagctattcaaaaccctgtt 132
             ||||||||||||||||| ||||||
Sbjct: 99157 tcagaagctattcaaaagcctgtt 99180
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    aaattacaattccttttctt 175
              ||||||||||||||||||||
Sbjct: 112164 aaattacaattccttttctt 112183
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>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   tacagtggctggtgacaagg 236
             ||||||||||||||||||||
Sbjct: 63651 tacagtggctggtgacaagg 63632
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>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 147   tgagtacaaaaattacaattcctt 170
             |||||||||||||| |||||||||
Sbjct: 69405 tgagtacaaaaattccaattcctt 69382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,805,953
Number of Sequences: 3902068
Number of extensions: 4805953
Number of successful extensions: 77822
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77607
Number of HSP's gapped (non-prelim): 208
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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