ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full ... 76 3e-11
2gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferas... 68 7e-09
3gb|AF153826.1|AF153826 Festuca arundinacea comt3 caffeic acid O-... 46 0.027
4gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O... 46 0.027
5gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O... 46 0.027
6gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O... 46 0.027
7gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltrans... 46 0.027
8gb|AF010291.1|AF010291 Lolium perenne bispecific caffeic acid/5-... 46 0.027
9gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltrans... 44 0.11
10ref|XM_480185.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.42
11dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
13gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltr... 42 0.42
14dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
15ref|XM_511550.1| PREDICTED: Pan troglodytes similar to CDNA sequ... 38 6.5
16gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase m... 38 6.5
17gb|AC117581.8| Mus musculus chromosome 3, clone RP23-105M18, com... 38 6.5
18emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 38 6.5
19emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 38 6.5
20ref|XM_937866.1| PREDICTED: Homo sapiens Similar to hypothetical... 38 6.5
21ref|XM_208993.6| PREDICTED: Homo sapiens Similar to hypothetical... 38 6.5
22emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in ... 38 6.5
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
25dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 38 6.5
26dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
27emb|AL845284.4| Zebrafish DNA sequence from clone DKEY-277C13, c... 38 6.5
28emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 38 6.5
29gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 38 6.5
30gb|AC003043.1|AC003043 Homo sapiens chromosome 17, clone HRPC106... 38 6.5 
>gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full insert mRNA sequence
          Length = 1314

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 51/54 (94%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 85   cggtgggcggttgccatggatctacttggtgaactcgatggcnaaatgcgttgg 138
            |||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 1097 cggtggacggttggcatggatctacttggtgaactcgatggc-aaatgcgttgg 1045
to top
>gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferase (COMT1) mRNA,
            complete cds
          Length = 1371

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 41/42 (97%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                      
Query: 97   gccatggatctacttggtgaactcgatggcnaaatgcgttgg 138
            |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1165 gccatggatctacttggtgaactcgatggc-aaatgcgttgg 1125



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 19   agccaaagtacatatgcag 37
            |||||||||||||||||||
Sbjct: 1229 agccaaagtacatatgcag 1211
to top
>gb|AF153826.1|AF153826 Festuca arundinacea comt3 caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1430

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||||||||||||||||||
Sbjct: 1162 atctacttggtgaactcgatggc 1140
to top
>gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1438

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||||||||||||||||||
Sbjct: 1146 atctacttggtgaactcgatggc 1124
to top
>gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1440

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||||||||||||||||||
Sbjct: 1155 atctacttggtgaactcgatggc 1133
to top
>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1446

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||||||||||||||||||
Sbjct: 1129 atctacttggtgaactcgatggc 1107
to top
>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete
            cds
          Length = 1455

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||||||||||||||||||
Sbjct: 1136 atctacttggtgaactcgatggc 1114
to top
>gb|AF010291.1|AF010291 Lolium perenne bispecific caffeic acid/5-hydroxyferulic acid
            O-methyltransferase mRNA, complete cds
          Length = 1475

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||||||||||||||||||
Sbjct: 1155 atctacttggtgaactcgatggc 1133
to top
>gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltransferase (OMT3) mRNA, complete
            cds
          Length = 1436

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 105  tctacttggtgaactcgatggc 126
            ||||||||||||||||||||||
Sbjct: 1172 tctacttggtgaactcgatggc 1151
to top
>ref|XM_480185.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1425

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  ctacttggtgaactcgatggc 126
            |||||||||||||||||||||
Sbjct: 1189 ctacttggtgaactcgatggc 1169
to top
>dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G09, full
           insert sequence
          Length = 1227

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 ctacttggtgaactcgatggc 126
           |||||||||||||||||||||
Sbjct: 987 ctacttggtgaactcgatggc 967
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 106     ctacttggtgaactcgatggc 126
               |||||||||||||||||||||
Sbjct: 3331696 ctacttggtgaactcgatggc 3331716
to top
>gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltransferase (ROMT-9)
            mRNA, complete cds
          Length = 1190

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  ctacttggtgaactcgatggc 126
            |||||||||||||||||||||
Sbjct: 1121 ctacttggtgaactcgatggc 1101
to top
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0438H08
          Length = 148626

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    ctacttggtgaactcgatggc 126
              |||||||||||||||||||||
Sbjct: 109263 ctacttggtgaactcgatggc 109283
to top
>ref|XM_511550.1| PREDICTED: Pan troglodytes similar to CDNA sequence BC025575
            (LOC454729), mRNA
          Length = 1326

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   cgcagcagcgccagcgagc 61
            |||||||||||||||||||
Sbjct: 1180 cgcagcagcgccagcgagc 1198
to top
>gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase mRNA, complete cds
          Length = 1233

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 104  atctacttggtgaactcgatggc 126
            |||||||| ||||||||||||||
Sbjct: 1147 atctacttagtgaactcgatggc 1125
to top
>gb|AC117581.8| Mus musculus chromosome 3, clone RP23-105M18, complete sequence
          Length = 215747

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 58     gagcaagagcaaggatggg 76
              |||||||||||||||||||
Sbjct: 134114 gagcaagagcaaggatggg 134132
to top
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     agcgagcaagagcaaggat 73
              |||||||||||||||||||
Sbjct: 746300 agcgagcaagagcaaggat 746318
to top
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
              complete sequence
          Length = 146168

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     acgcagcagcgccagcgag 60
              |||||||||||||||||||
Sbjct: 134873 acgcagcagcgccagcgag 134891
to top
>ref|XM_937866.1| PREDICTED: Homo sapiens Similar to hypothetical gene supported by
            AL050367; AK022946 (MGC34829), mRNA
          Length = 2412

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   cgcagcagcgccagcgagc 61
            |||||||||||||||||||
Sbjct: 2266 cgcagcagcgccagcgagc 2284
to top
>ref|XM_208993.6| PREDICTED: Homo sapiens Similar to hypothetical gene supported by
            AL050367; AK022946 (MGC34829), mRNA
          Length = 2412

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   cgcagcagcgccagcgagc 61
            |||||||||||||||||||
Sbjct: 2266 cgcagcagcgccagcgagc 2284
to top
>emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in linkage group 18, complete
              sequence
          Length = 251217

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     agcgccagcgagcaagagc 67
              |||||||||||||||||||
Sbjct: 143802 agcgccagcgagcaagagc 143784
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 42       acgcagcagcgccagcgag 60
                |||||||||||||||||||
Sbjct: 34083978 acgcagcagcgccagcgag 34083996
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 58       gagcaagagcaaggatggg 76
                |||||||||||||||||||
Sbjct: 18138298 gagcaagagcaaggatggg 18138280
to top
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 97      gccatggatctacttggtgaactcgat 123
               ||||||| | |||||||||||||||||
Sbjct: 1520770 gccatggttgtacttggtgaactcgat 1520744
to top
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0047E05
          Length = 184323

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    gagcaagagcaaggatggg 76
             |||||||||||||||||||
Sbjct: 61699 gagcaagagcaaggatggg 61681
to top
>emb|AL845284.4| Zebrafish DNA sequence from clone DKEY-277C13, complete sequence
          Length = 226168

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     agcgccagcgagcaagagc 67
              |||||||||||||||||||
Sbjct: 145482 agcgccagcgagcaagagc 145464
to top
>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
            sequence
          Length = 99356

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 42   acgcagcagcgccagcgag 60
            |||||||||||||||||||
Sbjct: 987  acgcagcagcgccagcgag 1005
to top
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 35      caggttgacgcagcagcgc 53
               |||||||||||||||||||
Sbjct: 4749699 caggttgacgcagcagcgc 4749681
to top
>gb|AC003043.1|AC003043 Homo sapiens chromosome 17, clone HRPC1067M6, complete sequence
          Length = 139488

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    cgcagcagcgccagcgagc 61
             |||||||||||||||||||
Sbjct: 34708 cgcagcagcgccagcgagc 34726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 955,209
Number of Sequences: 3902068
Number of extensions: 955209
Number of successful extensions: 69379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69243
Number of HSP's gapped (non-prelim): 136
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top