ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34o01 |
|---|---|
| Clone Library Name | barley_pub |
>THG_PETIN (Q40901) Gamma-thionin homolog PPT precursor| Length = 78 Score = 70.9 bits (172), Expect = 2e-12 Identities = 31/50 (62%), Positives = 37/50 (74%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 +TEMG M +AEARTC SQSH+F GTC+ SNCA VC+TE F G C + R Sbjct: 20 STEMGPMTSAEARTCESQSHRFHGTCVRESNCASVCQTEGFIGGNCRAFR 69
>THGF_HELAN (P82659) Flower-specific gamma-thionin precursor (Defensin SD2)| Length = 78 Score = 69.3 bits (168), Expect = 7e-12 Identities = 31/50 (62%), Positives = 35/50 (70%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 A EMG EARTC SQSHKFKGTCLS++NCA VC +E F G+C R Sbjct: 20 ANEMGGPLVVEARTCESQSHKFKGTCLSDTNCANVCHSERFSGGKCRGFR 69
>P322_SOLTU (P20346) Probable protease inhibitor P322 precursor| Length = 74 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/50 (58%), Positives = 34/50 (68%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 AT+MG M+ AEAR C S SH+FKG C +SNCA VC TE F G C+ R Sbjct: 16 ATKMGPMRIAEARHCESLSHRFKGPCTRDSNCASVCETERFSGGNCHGFR 65
>LCR69_ARATH (Q39182) Low-molecular-weight cysteine-rich protein LCR69 precursor| Length = 77 Score = 62.8 bits (151), Expect = 6e-10 Identities = 30/50 (60%), Positives = 33/50 (66%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 AT MG + EARTC SQSH+FKGTC+S SNCA VC E F G C R Sbjct: 20 ATGMGPV-TVEARTCESQSHRFKGTCVSASNCANVCHNEGFVGGNCRGFR 68
>LCR71_ARATH (P82781) Putative low-molecular-weight cysteine-rich protein LCR71| Length = 73 Score = 60.8 bits (146), Expect = 2e-09 Identities = 25/44 (56%), Positives = 30/44 (68%) Frame = -2 Query: 436 MGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 +G EAR C S+S KFKG C+S NCA VC TE FPDG+C+ Sbjct: 18 LGGSVTVEARICKSRSQKFKGPCVSEDNCANVCHTEGFPDGDCD 61
>DEF2_CAPAN (O65740) Defensin J1-2 precursor| Length = 74 Score = 60.8 bits (146), Expect = 2e-09 Identities = 27/45 (60%), Positives = 28/45 (62%) Frame = -2 Query: 430 TMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 T AEARTC SQSH+FKG C S SNC VC TE F G C R Sbjct: 21 TGMVAEARTCESQSHRFKGLCFSKSNCGSVCHTEGFNGGHCRGFR 65
>LCR70_ARATH (Q41914) Low-molecular-weight cysteine-rich protein LCR70 precursor| Length = 77 Score = 60.5 bits (145), Expect = 3e-09 Identities = 27/50 (54%), Positives = 33/50 (66%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 AT MG + EARTC SQS +FKG C+S++NC VC E FP G+C R Sbjct: 20 ATGMGPV-TVEARTCASQSQRFKGKCVSDTNCENVCHNEGFPGGDCRGFR 68
>LCR68_ARATH (Q9ZUL7) Probable low-molecular-weight cysteine-rich protein LCR68| precursor Length = 77 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/50 (54%), Positives = 32/50 (64%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 AT MG + EARTC S+SH+FKG C+S NCA VC E F G+C R Sbjct: 20 ATGMGPV-TVEARTCESKSHRFKGPCVSTHNCANVCHNEGFGGGKCRGFR 68
>LCR66_ARATH (Q9C947) Putative low-molecular-weight cysteine-rich protein LCR66| precursor Length = 76 Score = 57.4 bits (137), Expect = 3e-08 Identities = 27/50 (54%), Positives = 32/50 (64%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 AT MG + EARTC + S+ F G CLS+SNCA VC E F DG+C R Sbjct: 19 ATVMGLV-TVEARTCETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFR 67
>LCR74_ARATH (Q9FFP8) Putative low-molecular-weight cysteine-rich protein LCR74| precursor Length = 73 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/41 (58%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = -2 Query: 415 EARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNS-HR 296 E RTC S+SH FK C SN NCA VCR E F G C+ HR Sbjct: 25 EGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHR 65
>LCR72_ARATH (Q9ZUL8) Low-molecular-weight cysteine-rich protein LCR72 precursor| Length = 73 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/50 (50%), Positives = 33/50 (66%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 AT MG + EARTC S S+KF+G CL++ +CA C +E F G C+S R Sbjct: 20 ATGMGPV---EARTCESPSNKFQGVCLNSQSCAKACPSEGFSGGRCSSLR 66
>DEF1_CAPAN (Q43413) Defensin J1-1 precursor| Length = 75 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = -2 Query: 418 AEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLE 290 AEA+ C + S FKG CLS+ +C VCR E F DG C RL+ Sbjct: 25 AEAKICEALSGNFKGLCLSSRDCGNVCRREGFTDGSCIGFRLQ 67
>THGC_VIGUN (P83399) Cp-thionin| Length = 47 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/38 (55%), Positives = 22/38 (57%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 R C SQSH FKG C + NCA VCR E F G C R Sbjct: 1 RVCESQSHGFKGACTGDHNCALVCRNEGFSGGNCRGFR 38
>SRP_SOYBN (Q07502) 8.4 kDa sulfur-rich protein precursor (SE60 protein)| (Probable proteinase inhibitor P322) Length = 74 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/40 (52%), Positives = 22/40 (55%) Frame = -2 Query: 415 EARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 E R C SQSH F G C + NCA VCR E F G C R Sbjct: 27 EGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKRSR 66
>DEFD2_SPIOL (P81571) Antimicrobial peptide D2 (So-D2) (Defensin D2) (Fragment)| Length = 52 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -2 Query: 412 ARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 +R C + S FKG C +SNC CR E +P G+C R Sbjct: 5 SRKCKTPSKTFKGICTRDSNCDTSCRYEGYPAGDCKGIR 43
>THG_HORVU (P20230) Gamma hordothionin| Length = 47 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 R C +S FKG C+SN NCA VC E + G C+ Sbjct: 1 RICRRRSAGFKGPCVSNKNCAQVCMQEGWGGGNCD 35
>THG1_WHEAT (P20158) Gamma-1 purothionin| Length = 47 Score = 40.8 bits (94), Expect = 0.003 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 + C +S FKG C+SN NCA VC+ E + G C+ Sbjct: 1 KICRRRSAGFKGPCMSNKNCAQVCQQEGWGGGNCD 35
>THG1_MAIZE (P81008) Gamma-zeathionin-1| Length = 47 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 R C +S FKG C+S+ NCA VC E + G C+ Sbjct: 1 RVCRRRSAGFKGVCMSDHNCAQVCLQEGYGGGNCD 35
>FAB2_VICFA (P81457) Fabatin-2| Length = 47 Score = 39.7 bits (91), Expect = 0.006 Identities = 14/36 (38%), Positives = 25/36 (69%) Frame = -2 Query: 403 CLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 C +S++F G CL++++C+ VCR E + G+C+ R Sbjct: 5 CKVKSNRFNGPCLTDTHCSTVCRGEGYKGGDCHGLR 40
>SIA2_SORBI (P21924) Small protein inhibitor of insect alpha-amylases 2 (SI| alpha-2) Length = 48 Score = 39.3 bits (90), Expect = 0.008 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 R C+ +S FKG C+ + NCA VC E + G C+ Sbjct: 1 RVCMGKSAGFKGLCMRDQNCAQVCLQEGWGGGNCD 35
>FAB1_VICFA (P81456) Fabatin-1| Length = 47 Score = 39.3 bits (90), Expect = 0.008 Identities = 14/36 (38%), Positives = 25/36 (69%) Frame = -2 Query: 403 CLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHR 296 C +S++F G CL++++C+ VCR E + G+C+ R Sbjct: 5 CKVKSNRFHGPCLTDTHCSTVCRGEGYKGGDCHGLR 40
>SIA3_SORBI (P21925) Small protein inhibitor of insect alpha-amylases 3 (SI| alpha-3) Length = 47 Score = 38.9 bits (89), Expect = 0.010 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 R C +S FKG C+S+ NCA VC E + G C+ Sbjct: 1 RVCRRRSAGFKGLCMSDHNCAQVCLQEGWGGGNCD 35
>SA21_SORBI (Q09198) Small protein inhibitor of insect alpha-amylases 2.1 (SI| alpha-2.1) Length = 47 Score = 38.9 bits (89), Expect = 0.010 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 R C +S FKG C+S+ NCA VC E + G C+ Sbjct: 1 RVCRRRSAGFKGLCMSDHNCAQVCLQEGWGGGNCD 35
>AX2_BETVU (P82010) Antifungal protein AX2| Length = 46 Score = 38.9 bits (89), Expect = 0.010 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 406 TCLSQSHKFKGTCLSNSNCAGVCRTENFPDGEC 308 TC S F G C S++NC C E++P+G+C Sbjct: 2 TCRKPSMYFSGACFSDTNCQKACNREDWPNGKC 34
>THGF_TOBAC (P32026) Flower-specific gamma-thionin precursor| Length = 105 Score = 38.5 bits (88), Expect = 0.013 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -2 Query: 415 EARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 +AR C ++S+ F G C++ C C +E F DG C+ Sbjct: 24 QARECKTESNTFPGICITKPPCRKACISEKFTDGHCS 60
>DEF_NICAL (Q8GTM0) Flower-specific defensin precursor (NaD1)| Length = 105 Score = 38.5 bits (88), Expect = 0.013 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -2 Query: 415 EARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 +AR C ++S+ F G C++ C C +E F DG C+ Sbjct: 24 QARECKTESNTFPGICITKPPCRKACISEKFTDGHCS 60
>THG2_WHEAT (P20159) Gamma-2 purothionin| Length = 47 Score = 38.1 bits (87), Expect = 0.017 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 + C +S FKG C+S+ NCA VC E + G C+ Sbjct: 1 KVCRQRSAGFKGPCVSDKNCAQVCLQEGWGGGNCD 35
>LCR76_ARATH (P82785) Putative low-molecular-weight cysteine-rich protein LCR76| precursor Length = 86 Score = 37.7 bits (86), Expect = 0.022 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -2 Query: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGEC 308 A M + + + C ++S ++G CL +C VC +E FPDG C Sbjct: 20 APGMKMVVEGQPQLCETKSLNYRGLCLKWRSCKRVCISEGFPDGRC 65
>THG1_NICPA (O24115) Gamma-thionin 1 precursor| Length = 106 Score = 37.4 bits (85), Expect = 0.029 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 406 TCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 TC ++S+ F G C++ C C +E F DG+C+ Sbjct: 28 TCKAESNTFPGLCITKPPCRKACLSEKFTDGKCS 61
>LCR73_ARATH (P82782) Putative low-molecular-weight cysteine-rich protein LCR73| precursor Length = 80 Score = 36.6 bits (83), Expect = 0.050 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCRT-ENFPDGEC 308 + C ++S +F G C+S +NCA +C+ E+F G C Sbjct: 31 KICKTRSDRFSGVCISTNNCAIICQQFEHFDGGHC 65
>DEFD7_SPIOL (P81573) Antimicrobial peptide D7 (So-D7) (Defensin D7) (Fragment)| Length = 38 Score = 36.6 bits (83), Expect = 0.050 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -2 Query: 412 ARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGE 311 +R C + S FKG C +SNC CR E +P G+ Sbjct: 5 SRKCKTPSKTFKGYCTRDSNCDTSCRYEGYPAGD 38
>LCR75_ARATH (P82784) Low-molecular-weight cysteine-rich protein LCR75 precursor| Length = 75 Score = 35.8 bits (81), Expect = 0.085 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 403 CLSQSHKFKGTCLSNSNCAGVCRTENFPDGEC 308 C ++S +KG CL NC VC +E F DG C Sbjct: 26 CEAKSLDWKGMCLKWRNCRQVCISEGFTDGRC 57
>DEF1_PETHY (Q8H6Q1) Floral defensin-like protein 1 precursor (PhD1)| Length = 103 Score = 34.3 bits (77), Expect = 0.25 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -2 Query: 418 AEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECN 305 AEA TC ++ + C++ C C+ F DG C+ Sbjct: 23 AEAATCKAECPTWDSVCINKKPCVACCKKAKFSDGHCS 60
>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516| Length = 1157 Score = 34.3 bits (77), Expect = 0.25 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 5/94 (5%) Frame = +1 Query: 1 YGCPSC*QREKRNDLLHHHLRD*RAMTELQGRRP-AGE--LIKLQIETPTD--SSPKLRT 165 Y CP C R + L H+R R T +QG P AGE L ++++ D +SP T Sbjct: 62 YKCPYCDHRASQKGNLKIHIRSHRTGTLIQGHEPEAGEAQLGEMRVSEGLDGCASPTKST 121 Query: 166 SGCMEMNHYYLF*TELTSGRAWMGGLVCLNRSSR 267 S C + +G M G L RSSR Sbjct: 122 SAC----------NRVLNGAVPMDGSKILLRSSR 145
>DEFD1_SPIOL (P81572) Antimicrobial peptide D1 (So-D1) (Defensin D1) (Fragment)| Length = 22 Score = 33.9 bits (76), Expect = 0.32 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -2 Query: 406 TCLSQSHKFKGTCLSNSNC 350 TC S SHKFKG C +N NC Sbjct: 2 TCESPSHKFKGPCATNRNC 20
>AX1_BETVU (P81493) Antifungal protein AX1| Length = 46 Score = 32.7 bits (73), Expect = 0.72 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 403 CLSQSHKFKGTCLSNSNCAGVCRTENFPDGEC 308 C S FKG C +++C C EN+P G C Sbjct: 3 CKKPSKFFKGACGRDADCEKACDQENWPGGVC 34
>DEF2_PETHY (Q8H6Q0) Floral defensin-like protein 2 precursor (PhD2)| Length = 101 Score = 32.3 bits (72), Expect = 0.94 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -2 Query: 415 EARTCLSQSHKFKGTCLSNSNCAGVCRT--ENFPDGECN 305 EA TC ++ ++G C++ + C C+ E F DG C+ Sbjct: 24 EAGTCKAECPTWEGICINKAPCVKCCKAQPEKFTDGHCS 62
>PSD2_PEA (P81930) Defense-related peptide 2 (Defensin-2) (Antifungal protein| Psd2) Length = 47 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -2 Query: 409 RTCLSQSHKFKGTCLSNSNCAGVCR-TENFPDGEC 308 +TC + S FKG C+ + NC CR E+ G C Sbjct: 1 KTCENLSGTFKGPCIPDGNCNKHCRNNEHLLSGRC 35
>AAT_PSEAE (P72173) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 398 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = -1 Query: 290 AKVLLQADLLDLFKQTSPPIHARPLVSSVQNK**WFISMHPEVRSLGEESVG 135 A+VL Q + ++PP H +VSSV N PE+R+L E+ +G Sbjct: 271 ARVLSQVKRVIRTNYSNPPTHGASVVSSVLNS--------PELRALWEQELG 314
>ZN516_HUMAN (Q92618) Zinc finger protein 516| Length = 1163 Score = 29.3 bits (64), Expect = 7.9 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 5/95 (5%) Frame = +1 Query: 1 YGCPSC*QREKRNDLLHHHLRD*RAMTELQGRRP-AGE--LIKLQIETPTD--SSPKLRT 165 Y CP C R + L H+R R T +QG P AGE L +++ D +SP Sbjct: 62 YKCPYCDHRASQKGNLKIHIRSHRTGTLIQGHEPEAGEAPLGEMRASEGLDACASPTKSA 121 Query: 166 SGCMEMNHYYLF*TELTSGRAWMGGLVCLNRSSRS 270 S C L +G + G LN +S++ Sbjct: 122 SAC----------NRLLNGASQADGARVLNGASQA 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,433,677 Number of Sequences: 219361 Number of extensions: 943521 Number of successful extensions: 2114 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 2076 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2114 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
