ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PD... 46 9e-05
2CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsB... 30 4.0
3CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1) 29 9.0

>YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PDI1 intergenic|
           region
          Length = 760

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -3

Query: 589 QEKEEGIIPLTDYLPIIPQSYVTH--SLQVEALRGIVSIPAKLESTTLVFTYGVDLFYTR 416
           ++KE    P T  +PI     +TH  +L   +   ++SIP  LEST+++   G+D+F TR
Sbjct: 652 KKKEFMATPYTPVIPINDNFIITHFRNLLPGSDSQLISIPTNLESTSIICDLGLDVFCTR 711

Query: 415 LAPSRTYDSLTDEF 374
           + PS  +D ++  F
Sbjct: 712 ITPSGQFDLMSPTF 725



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>CYPC_BACSU (O31440) Cytochrome P450 152A1 (EC 1.14.-.-) (P450BsBeta) (Fatty|
           acid beta-hydroxylase)
          Length = 417

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 LTAQVPHAVSSQESNFTLK---CYINNRTLALNKRKITMSTRAQNFICITTLEAS 270
           +  Q+PH  S   S   LK    +I NRT   N          +NFIC+T  EA+
Sbjct: 1   MNEQIPHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAA 55



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>CYNT_SYNP7 (P27134) Carbonic anhydrase (EC 4.2.1.1)|
          Length = 272

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = -2

Query: 281 VEVIEASNVVMQMKFWALVDIVIFLLFSARVLLFM*HFKVKFD--------SWDDTA*GT 126
           VE++ A NV+ Q++      IV   LF  ++ +F   ++V+          S DDT    
Sbjct: 147 VEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFGWIYEVESGEVLQISRTSSDDTGIDE 206

Query: 125 CAVRNPGHDIKELADHSWHPYT 60
           C VR PG   K +      P T
Sbjct: 207 CPVRLPGSQEKAILGRCVVPLT 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,282,971
Number of Sequences: 219361
Number of extensions: 1564055
Number of successful extensions: 3340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3338
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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