ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35c20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK058475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
2dbj|AK069846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
3dbj|AK059427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
4gb|BT016477.1| Zea mays clone Contig310 mRNA sequence 90 9e-15
5emb|AJ223492.1|TAIMA1 Triticum aestivum mRNA for monomeric alpha... 90 9e-15
6gb|AY106845.1| Zea mays PCO147512 mRNA sequence 90 9e-15
7ref|NM_125809.3| Arabidopsis thaliana unknown protein AT5G64130 ... 84 5e-13
8ref|NM_001037057.1| Arabidopsis thaliana unknown protein AT5G641... 84 5e-13
9gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
10gb|AY097399.1| Arabidopsis thaliana AT5g64130/MHJ24_11 mRNA, com... 84 5e-13
11gb|AY058135.1| Arabidopsis thaliana AT5g64130/MHJ24_11 mRNA, com... 84 5e-13
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
13emb|BX834062.1|CNS0A26V Arabidopsis thaliana Full-length cDNA Co... 84 5e-13
14gb|AY084225.1| Arabidopsis thaliana clone 10032 mRNA, complete s... 84 5e-13
15gb|BT018355.1| Zea mays clone EL01T0403H09.c mRNA sequence 72 2e-09
16gb|AY108494.1| Zea mays PCO113418 mRNA sequence 72 2e-09
17ref|NM_188794.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
18dbj|AK066274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
19dbj|AK061748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
20gb|AF061157.1|AF061157 Vernicia fordii negatively light-regulate... 64 5e-07
21gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete seq... 62 2e-06
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
23dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
24emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c2... 60 8e-06
25dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 60 8e-06
26ref|NM_191901.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
27emb|X14075.1|LG106 Lemna gibba negatively light-regulated mRNA (... 56 1e-04
28gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ... 54 5e-04
29dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
30dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
31gb|BT017304.1| Zea mays clone EL01N0316E01.c mRNA sequence 50 0.007
32dbj|AK062656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
33dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.46
34gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, comple... 44 0.46
35gb|AY110240.1| Zea mays CL5921_1 mRNA sequence 44 0.46
36gb|M35866.1|LGILG106NL L.gibba negatively light-regulated protei... 44 0.46
37ref|XM_505772.1| Yarrowia lipolytica CLIB122, YALI0F23045g predi... 42 1.8
38gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.8
39emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 42 1.8
40ref|XM_633933.1| Dictyostelium discoideum hypothetical protein (... 40 7.2
41gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 7.2
42gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.2
43gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.2
44ref|XM_503221.1| Yarrowia lipolytica CLIB122, YALI0D24189g predi... 40 7.2
45emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; ... 40 7.2
46emb|BX537143.5| Zebrafish DNA sequence from clone CH211-86H15 in... 40 7.2
47gb|AC154586.2| Mus musculus BAC clone RP23-362L12 from chromosom... 40 7.2
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
49dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 7.2
50dbj|AK062385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
51emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-6... 40 7.2
52gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.2
53emb|CT030649.7| Mouse DNA sequence from clone RP24-354G13 on chr... 40 7.2
54emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 7.2
55dbj|D49911.1|TTHUVRA Thermus thermophilus UvrA gene, complete cds 40 7.2
56dbj|AB030754.1| Mus musculus prkdc gene for DNA-dependent protei... 40 7.2 
>dbj|AK058475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C02, full
           insert sequence
          Length = 729

 Score =  204 bits (103), Expect = 2e-49
 Identities = 157/175 (89%)
 Strand = Plus / Minus

                                                                       
Query: 341 ccctcttcgctgtcagtagatgcatgaaggaatcggcgtgaacgggcttgctgctgggta 400
           ||||||||| |||||  ||| |||||||| ||||| || ||||| |||||||| || |||
Sbjct: 279 ccctcttcgttgtcaacagaagcatgaagaaatcgacgcgaacgtgcttgctgttgagta 220

                                                                       
Query: 401 ggctgtaatttcggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcctcct 460
           ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 219 ggctgcaattttggtcggagtgcttcaagcggccctttaggtttttgagggtgtcctcct 160

                                                                  
Query: 461 tgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttgg 515
           ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 159 tgcttccccaaagcccaatcagcagaatcaaagtaagctcgctcatgatccttgg 105
to top
>dbj|AK069846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034B10, full
           insert sequence
          Length = 983

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 101/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Minus

                                                                       
Query: 398 gtaggctgtaatttcggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcct 457
           |||||||| | ||| ||||||||||||||||| |||||||||||  |||| || | ||| 
Sbjct: 549 gtaggctgaagttttggtcgaagtgcttcaagaggccctttagg--tttgtggct-tcca 493

                                                                   
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
           |||||||| || ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 492 ccttgcttgcctagagcccaatcagcagaatcaaagtaagcccgatcatgatcctt 437
to top
>dbj|AK059427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E11, full
           insert sequence
          Length = 871

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 101/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Minus

                                                                       
Query: 398 gtaggctgtaatttcggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcct 457
           |||||||| | ||| ||||||||||||||||| |||||||||||  |||| || | ||| 
Sbjct: 437 gtaggctgaagttttggtcgaagtgcttcaagaggccctttagg--tttgtggct-tcca 381

                                                                   
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
           |||||||| || ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 380 ccttgcttgcctagagcccaatcagcagaatcaaagtaagcccgatcatgatcctt 325
to top
>gb|BT016477.1| Zea mays clone Contig310 mRNA sequence
          Length = 1237

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 413 ggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcctccttgctttcccaga 472
           ||||| ||||| ||||| || ||||||||||| |  |||   || ||||||||||| |||
Sbjct: 643 ggtcggagtgcctcaagaggacctttaggcttgttgggaacaccaccttgctttcctaga 584

                                                                
Query: 473 gcccaatcagcagaatcaaagtaagctcgctcatggtccttggatatgagtgg 525
           |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 583 gcccaatcagcagaatcaaagtaagcacgttcatgatccttagatataagtgg 531
to top
>emb|AJ223492.1|TAIMA1 Triticum aestivum mRNA for monomeric alpha-amylase inhibitor
           (WAI-0.28)
          Length = 689

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                
Query: 477 aatcagcagaatcaaagtaagctcgctcatggtccttggatatgagtggtgac 529
           ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 53  aatcagcagaatcaaagcaagctcgctcatggtccttggatataagtggtgac 1
to top
>gb|AY106845.1| Zea mays PCO147512 mRNA sequence
          Length = 1223

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 413 ggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcctccttgctttcccaga 472
           ||||| ||||| ||||| || ||||||||||| |  |||   || ||||||||||| |||
Sbjct: 657 ggtcggagtgcctcaagaggacctttaggcttgttgggaacaccaccttgctttcctaga 598

                                                                
Query: 473 gcccaatcagcagaatcaaagtaagctcgctcatggtccttggatatgagtgg 525
           |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 597 gcccaatcagcagaatcaaagtaagcacgttcatgatccttagatataagtgg 545
to top
>ref|NM_125809.3| Arabidopsis thaliana unknown protein AT5G64130 transcript variant
           AT5G64130.1 mRNA, complete cds
          Length = 650

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| 
Sbjct: 352 ccttgctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatccttggaa 293

                     
Query: 518 atgagtggtg 527
           ||||| ||||
Sbjct: 292 atgagaggtg 283
to top
>ref|NM_001037057.1| Arabidopsis thaliana unknown protein AT5G64130 transcript variant
           AT5G64130.2 mRNA, complete cds
          Length = 707

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| 
Sbjct: 408 ccttgctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatccttggaa 349

                     
Query: 518 atgagtggtg 527
           ||||| ||||
Sbjct: 348 atgagaggtg 339
to top
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
             complete sequence
          Length = 204649

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 407   aatttcggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcctccttgct 464
             ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 66251 aattttggtcggagtgcttcaagcggccctttaggtttttgagggtgtcctccttgct 66308



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                           
Query: 467   cccagagcccaatcagcagaatcaaagtaagctcgctcatggtcct 512
             |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66418 cccaaagcccaatcagcagaatcaaagtaagctcgctcatgatcct 66463
to top
>gb|AY097399.1| Arabidopsis thaliana AT5g64130/MHJ24_11 mRNA, complete cds
          Length = 348

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| 
Sbjct: 197 ccttgctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatccttggaa 138

                     
Query: 518 atgagtggtg 527
           ||||| ||||
Sbjct: 137 atgagaggtg 128
to top
>gb|AY058135.1| Arabidopsis thaliana AT5g64130/MHJ24_11 mRNA, complete cds
          Length = 618

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| 
Sbjct: 318 ccttgctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatccttggaa 259

                     
Query: 518 atgagtggtg 527
           ||||| ||||
Sbjct: 258 atgagaggtg 249
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 407      aatttcggtcgaagtgcttcaagcggccctttaggcttttgaggatgtcctccttgct 464
                ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 27986086 aattttggtcggagtgcttcaagcggccctttaggtttttgagggtgtcctccttgct 27986143



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                              
Query: 467      cccagagcccaatcagcagaatcaaagtaagctcgctcatggtcct 512
                |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 27986253 cccaaagcccaatcagcagaatcaaagtaagctcgctcatgatcct 27986298
to top
>emb|BX834062.1|CNS0A26V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL93ZA07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 574

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| 
Sbjct: 302 ccttgctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatccttggaa 243

                     
Query: 518 atgagtggtg 527
           ||||| ||||
Sbjct: 242 atgagaggtg 233
to top
>gb|AY084225.1| Arabidopsis thaliana clone 10032 mRNA, complete sequence
          Length = 650

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||| 
Sbjct: 352 ccttgctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatccttggaa 293

                     
Query: 518 atgagtggtg 527
           ||||| ||||
Sbjct: 292 atgagaggtg 283
to top
>gb|BT018355.1| Zea mays clone EL01T0403H09.c mRNA sequence
          Length = 738

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           |||||||| || |||||||| ||||||||||||||||| || |||||||| ||||| || 
Sbjct: 378 ccttgcttccctagagcccagtcagcagaatcaaagtaggcccgctcatgatcctttgag 319

                   
Query: 518 atgagtgg 525
           ||||||||
Sbjct: 318 atgagtgg 311
to top
>gb|AY108494.1| Zea mays PCO113418 mRNA sequence
          Length = 1007

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggat 517
           |||||||| || |||||||| ||||||||||||||||| || |||||||| ||||| || 
Sbjct: 664 ccttgcttccctagagcccagtcagcagaatcaaagtaggcccgctcatgatcctttgag 605

                   
Query: 518 atgagtgg 525
           ||||||||
Sbjct: 604 atgagtgg 597
to top
>ref|NM_188794.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 381

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 463 ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggatatgag 522
           ||||||||||||||| |||||||||||||| || || || ||||| ||||| || |||||
Sbjct: 216 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatccttcgagatgag 157

                
Query: 523 tggtg 527
           |||||
Sbjct: 156 tggtg 152
to top
>dbj|AK066274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061O18, full
            insert sequence
          Length = 2109

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                        
Query: 463  ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggatatgag 522
            ||||||||||||||| |||||||||||||| || || || ||||| ||||| || |||||
Sbjct: 1661 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatccttcgagatgag 1602

                 
Query: 523  tggtg 527
            |||||
Sbjct: 1601 tggtg 1597
to top
>dbj|AK061748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G04, full
           insert sequence
          Length = 948

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 463 ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttggatatgag 522
           ||||||||||||||| |||||||||||||| || || || ||||| ||||| || |||||
Sbjct: 511 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatccttcgagatgag 452

                
Query: 523 tggtg 527
           |||||
Sbjct: 451 tggtg 447
to top
>gb|AF061157.1|AF061157 Vernicia fordii negatively light-regulated protein mRNA, complete
           cds
          Length = 985

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 456 ctccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttgg 515
           |||||||||||||||  ||||||||||||||||||||  | || |||||||| ||||| |
Sbjct: 403 ctccttgctttcccaacgcccaatcagcagaatcaaaaaatgcacgctcatgatccttag 344

               
Query: 516 atat 519
           ||||
Sbjct: 343 atat 340
to top
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence
          Length = 116601

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 456   ctccttgctttcccagagcccaatcagcagaatcaaagtaagc 498
             |||| |||||||||| ||||||||||||||||||||| |||||
Sbjct: 35573 ctccatgctttcccaaagcccaatcagcagaatcaaaataagc 35531
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 470      agagcccaatcagcagaatcaaagtaagctcgctcatggtcct 512
                ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct: 27141110 agagcccaatcagcagaatcaaagtaagcccgatcatgatcct 27141068



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                  
Query: 463     ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
               ||||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 8212254 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatcctt 8212304



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 413      ggtcgaagtgcttcaagcggccctttagg 441
                ||||||||||||||||| |||||||||||
Sbjct: 27141270 ggtcgaagtgcttcaagaggccctttagg 27141242
to top
>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003E08
          Length = 135014

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 470   agagcccaatcagcagaatcaaagtaagctcgctcatggtcct 512
             ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct: 48788 agagcccaatcagcagaatcaaagtaagcccgatcatgatcct 48746



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 413   ggtcgaagtgcttcaagcggccctttagg 441
             ||||||||||||||||| |||||||||||
Sbjct: 48948 ggtcgaagtgcttcaagaggccctttagg 48920
to top
>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
          Length = 243542

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 463    ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcct 512
              |||||||| ||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 203342 ctttcccaaagcccaatcagcagaatcaaaataagcacgttcatgatcct 203391



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 419    agtgcttcaagcggccctttaggcttttg 447
              ||||||||||| || ||||||||||||||
Sbjct: 203179 agtgcttcaagtggtcctttaggcttttg 203207
to top
>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 463   ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcct 512
             |||||| |||||||||||||| || |||||||| ||||||||||| ||||
Sbjct: 38388 ctttccaagagcccaatcagctgagtcaaagtatgctcgctcatgatcct 38437
to top
>ref|NM_191901.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 567

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 398 gtaggctgtaatttcggtcgaagtgcttcaagcggccctttagg 441
           |||||||| | ||| ||||||||||||||||| |||||||||||
Sbjct: 437 gtaggctgaagttttggtcgaagtgcttcaagaggccctttagg 394
to top
>emb|X14075.1|LG106 Lemna gibba negatively light-regulated mRNA (Lg106)
          Length = 398

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 455 cctccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttg 514
           |||||||||||||| |  ||||| ||||| || |||||| | |||||||| |||||||||
Sbjct: 101 cctccttgctttcctaatgcccagtcagcggagtcaaagaaggctcgctcgtggtccttg 42

                   
Query: 515 gatatgag 522
           || |||||
Sbjct: 41  gaaatgag 34
to top
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 463    ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
              ||||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 176375 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatcctt 176425
to top
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034C11
          Length = 139399

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 463    ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
              ||||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 129972 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatcctt 130022
to top
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0434D08
          Length = 161266

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                               
Query: 463  ctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
            ||||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 6185 ctttcccagagcccagtcagcagaatcaaaataggcccgttcatgatcctt 6235
to top
>gb|BT017304.1| Zea mays clone EL01N0316E01.c mRNA sequence
          Length = 937

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 482 gcagaatcaaagtaagctcgctcatggtccttggata 518
           |||||||||||||| || ||||| |||||||||||||
Sbjct: 315 gcagaatcaaagtaggcgcgctcgtggtccttggata 279
to top
>dbj|AK062656.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E12, full
           insert sequence
          Length = 627

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 459 cttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
           ||||||| || ||| |||| || || ||||||||||| || ||||||||||||||
Sbjct: 241 cttgcttgccaagaacccagtctgcggaatcaaagtaggcgcgctcatggtcctt 187
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 275     tcggctgccttggcctcctcgg 296
               ||||||||||||||||||||||
Sbjct: 4477497 tcggctgccttggcctcctcgg 4477518
to top
>gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, complete sequence
          Length = 144277

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 477  aatcagcagaatcaaagtaagc 498
            ||||||||||||||||||||||
Sbjct: 2037 aatcagcagaatcaaagtaagc 2058
to top
>gb|AY110240.1| Zea mays CL5921_1 mRNA sequence
          Length = 872

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 482 gcagaatcaaagtaagctcgctcatggtccttggatat 519
           |||||||| ||||| || ||||| ||||||||||||||
Sbjct: 257 gcagaatcgaagtaggcgcgctcgtggtccttggatat 220
to top
>gb|M35866.1|LGILG106NL L.gibba negatively light-regulated protein (Lg106) mRNA, 3' end
          Length = 378

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                       
Query: 455 cctccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtccttg 514
           |||||||||||||| |  ||||| ||||| || ||||||   |||||||| |||||||||
Sbjct: 95  cctccttgctttcctaatgcccagtcagcggagtcaaag---gctcgctcgtggtccttg 39

                   
Query: 515 gatatgag 522
           || |||||
Sbjct: 38  gaaatgag 31
to top
>ref|XM_505772.1| Yarrowia lipolytica CLIB122, YALI0F23045g predicted mRNA
          Length = 6054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 265  ttccttgttctcggctgccttggcctcct 293
            |||||||||||||||  ||||||||||||
Sbjct: 4359 ttccttgttctcggcctccttggcctcct 4331
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 276    cggctgccttggcctcctcgg 296
              |||||||||||||||||||||
Sbjct: 425204 cggctgccttggcctcctcgg 425224
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 265     ttccttgttctcggctgccttggcctcct 293
               |||||||||||||||  ||||||||||||
Sbjct: 3022394 ttccttgttctcggcctccttggcctcct 3022422
to top
>ref|XM_633933.1| Dictyostelium discoideum hypothetical protein (DDB0185575), partial
           mRNA
          Length = 318

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 473 gcccaatcagcagaatcaaa 492
           ||||||||||||||||||||
Sbjct: 224 gcccaatcagcagaatcaaa 205
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 473     gcccaatcagcagaatcaaa 492
               ||||||||||||||||||||
Sbjct: 6036156 gcccaatcagcagaatcaaa 6036175
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 485      gaatcaaagtaagctcgctcatggtcct 512
                ||||||||||| || |||||||||||||
Sbjct: 10776585 gaatcaaagtaggcgcgctcatggtcct 10776612
to top
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 485   gaatcaaagtaagctcgctcatggtcct 512
             ||||||||||| || |||||||||||||
Sbjct: 78302 gaatcaaagtaggcgcgctcatggtcct 78275
to top
>ref|XM_503221.1| Yarrowia lipolytica CLIB122, YALI0D24189g predicted mRNA
          Length = 4137

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  tcaaaaaaggacatgggagc 253
            ||||||||||||||||||||
Sbjct: 2660 tcaaaaaaggacatgggagc 2641
to top
>emb|AL445064.1|TACID2 Thermoplasma acidophilum complete genome; segment 2/5
          Length = 338100

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    gacgtccggaatacttattg 187
              ||||||||||||||||||||
Sbjct: 279742 gacgtccggaatacttattg 279723
to top
>emb|BX537143.5| Zebrafish DNA sequence from clone CH211-86H15 in linkage group 11,
              complete sequence
          Length = 204606

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    acacttcagttcaaaattca 154
              ||||||||||||||||||||
Sbjct: 121923 acacttcagttcaaaattca 121904
to top
>gb|AC154586.2| Mus musculus BAC clone RP23-362L12 from chromosome 16, complete
             sequence
          Length = 224155

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ctgccttggcctcctcggtg 298
             ||||||||||||||||||||
Sbjct: 26793 ctgccttggcctcctcggtg 26774
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 485      gaatcaaagtaagctcgctcatggtcct 512
                ||||||||||| || |||||||||||||
Sbjct: 10774686 gaatcaaagtaggcgcgctcatggtcct 10774713
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 440     ggcttttgaggatgtcctcc 459
               ||||||||||||||||||||
Sbjct: 1368406 ggcttttgaggatgtcctcc 1368387
to top
>dbj|AK062385.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C01, full
           insert sequence
          Length = 612

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 458 ccttgctttcccagagcccaatcagcagaatcaaagtaagctcgctcatggtcctt 513
           |||||||| || || |||||||| || ||||| || || || ||||||||||||||
Sbjct: 322 ccttgcttgccaagtgcccaatcggcggaatcgaaataggcacgctcatggtcctt 267
to top
>emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-68I8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174860

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    ccttggatatgagtggtgac 529
              ||||||||||||||||||||
Sbjct: 128546 ccttggatatgagtggtgac 128527
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 440     ggcttttgaggatgtcctcc 459
               ||||||||||||||||||||
Sbjct: 1044842 ggcttttgaggatgtcctcc 1044823
to top
>emb|CT030649.7| Mouse DNA sequence from clone RP24-354G13 on chromosome 16, complete
             sequence
          Length = 140452

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ctgccttggcctcctcggtg 298
             ||||||||||||||||||||
Sbjct: 18345 ctgccttggcctcctcggtg 18364
to top
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 234     tcaaaaaaggacatgggagc 253
               ||||||||||||||||||||
Sbjct: 3191621 tcaaaaaaggacatgggagc 3191602
to top
>dbj|D49911.1|TTHUVRA Thermus thermophilus UvrA gene, complete cds
          Length = 3142

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 440  ggcttttgaggatgtcctcc 459
            ||||||||||||||||||||
Sbjct: 1841 ggcttttgaggatgtcctcc 1822
to top
>dbj|AB030754.1| Mus musculus prkdc gene for DNA-dependent protein kinase catalytic
              subunit, complete cds
          Length = 193650

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    ctgccttggcctcctcggtg 298
              ||||||||||||||||||||
Sbjct: 165508 ctgccttggcctcctcggtg 165489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,453,442
Number of Sequences: 3902068
Number of extensions: 3453442
Number of successful extensions: 146579
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146234
Number of HSP's gapped (non-prelim): 341
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top