| Clone Name | rbags35c18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF525086.1| Triticum aestivum GSK-like kinase mRNA, complete cds Length = 1573 Score = 252 bits (127), Expect = 5e-64 Identities = 152/159 (95%), Gaps = 1/159 (0%) Strand = Plus / Minus Query: 65 gcctcgatccatgaacaaatactggaccaaatattggcggtacatagtgtgcatccttcc 124 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1539 gcctcgatccatgaacaaatactggaccaaatattggcggtacatagggtgcatccttca 1480 Query: 125 ttgcatagcacatgagctcaggggagaacagtcgaaacacttctcatctacttacagaat 184 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || Sbjct: 1479 ttgcatagcacatgagctcaggggaaaacggtcgaaacacttctcatctacttacagtat 1420 Query: 185 catgggtgatttgttacnatcggcagtagggggaaagaa 223 |||||||| |||||||| ||||||||||||||||||||| Sbjct: 1419 catgggtggtttgttac-atcggcagtagggggaaagaa 1382
>gb|AC169520.2| Mus musculus BAC clone RP23-35C6 from chromosome 19, complete sequence Length = 209374 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 agcacatgagctcaggggagaacag 155 ||||| ||||||||||||||||||| Sbjct: 123500 agcacttgagctcaggggagaacag 123476
>gb|AC166063.4| Mus musculus BAC clone RP23-21L22 from chromosome 19, complete sequence Length = 232698 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 agcacatgagctcaggggagaacag 155 ||||| ||||||||||||||||||| Sbjct: 138755 agcacttgagctcaggggagaacag 138779
>gb|AC155249.2| Mus musculus BAC clone RP24-254A5 from chromosome 9, complete sequence Length = 191932 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 tacttacagaatcatgggtgattt 196 |||||||||||||||| ||||||| Sbjct: 84831 tacttacagaatcatgtgtgattt 84854
>ref|XM_742285.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g05770) partial mRNA Length = 912 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gggaaagaaagaatcatgac 234 |||||||||||||||||||| Sbjct: 340 gggaaagaaagaatcatgac 359
>emb|AL589645.10| Human DNA sequence from clone RP11-251H13 on chromosome 9, complete sequence Length = 48323 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 aaagaaagaatcatgacacc 237 |||||||||||||||||||| Sbjct: 39354 aaagaaagaatcatgacacc 39373
>dbj|AB122031.1| Oncorhynchus mykiss tyrb mRNA for tyrosinase b, complete cds Length = 3171 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gggggaaagaaagaatcatg 232 |||||||||||||||||||| Sbjct: 77 gggggaaagaaagaatcatg 58 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,094,692 Number of Sequences: 3902068 Number of extensions: 3094692 Number of successful extensions: 41938 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41930 Number of HSP's gapped (non-prelim): 7 length of query: 249 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 227 effective length of database: 17,147,199,772 effective search space: 3892414348244 effective search space used: 3892414348244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)