ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1o08 |
|---|---|
| Clone Library Name | barley_pub |
>DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1)| Length = 502 Score = 219 bits (559), Expect = 5e-57 Identities = 109/164 (66%), Positives = 131/164 (79%), Gaps = 9/164 (5%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDEFEISEFLRRF 504 GY N+M+NC+EN +VL+EGLE+T RFNIVSKD+GVPLVAFSLKDSS H EFEIS+ LRR+ Sbjct: 339 GYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRY 398 Query: 503 GWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALPSR-----SSG 339 GWIVPAYTMPP+AQH+TVLRVV+REDFSRT AERLVIDIEKV+ ELD LPSR S G Sbjct: 399 GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLG 458 Query: 338 PSLQHPNGD----TVSEKDLARQREVVSVWKRAVAARKKTQGVC 219 N D TV + D+ +QR++++ WK+ VA RKKT G+C Sbjct: 459 QEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502
>DCE2_ARATH (Q42472) Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)| Length = 494 Score = 205 bits (522), Expect = 9e-53 Identities = 104/157 (66%), Positives = 121/157 (77%), Gaps = 2/157 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDEFEISEFLRRF 504 GY N+M+NC EN +VLKEG+E+T RFNIVSKDQGVP+VAFSLKD S H+EFEISE LRRF Sbjct: 338 GYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRF 397 Query: 503 GWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALPSRSSGPSLQH 324 GWIVPAYTMP DAQH+TVLRVV+REDFSRT AERLV DI KVLHELD LPS+ S Sbjct: 398 GWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMGIE 457 Query: 323 PNGDTVSEKDLARQ--REVVSVWKRAVAARKKTQGVC 219 + V EK + ++ EV+ W++ V RKK GVC Sbjct: 458 GIAENVKEKKMEKEILMEVIVGWRKFVKERKKMNGVC 494
>DCE_PETHY (Q07346) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 500 Score = 204 bits (519), Expect = 2e-52 Identities = 106/162 (65%), Positives = 126/162 (77%), Gaps = 7/162 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDEFEISEFLRRF 504 GY N+M+NCQENA VL+EGLE+TGRFNI+SK+ GVPLVAFSLKD+ +H+EFEISE LRRF Sbjct: 339 GYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRF 398 Query: 503 GWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALPSR-----SSG 339 GWIVPAYTMPP+AQH+TVLRVV+REDFSRT AERLV DIEKVLHELD LP+R + Sbjct: 399 GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVA 458 Query: 338 PSLQHPNGDTVSEK-DLARQREVVSVWKRAV-AARKKTQGVC 219 NG V +K D Q E+++ WK+ V +KKT VC Sbjct: 459 EEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKKKKTNRVC 500
>DCE_LYCES (P54767) Glutamate decarboxylase (EC 4.1.1.15) (GAD) (ERT D1)| Length = 502 Score = 177 bits (448), Expect = 3e-44 Identities = 93/170 (54%), Positives = 114/170 (67%), Gaps = 15/170 (8%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDEFEISEFLRRF 504 GY N+M NC NA VL EG+ + GRF+IVSKD GVP+VAFSL+DSS++ FE+SE LRRF Sbjct: 340 GYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRF 399 Query: 503 GWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALPSR-------- 348 GWIVPAYTMPPDA+H+ VLRVV+REDFS + AERLV DIEK+L ELD P R Sbjct: 400 GWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRV 459 Query: 347 -------SSGPSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQGVC 219 G L H + DTV Q++++ W++ A KKT GVC Sbjct: 460 TAEEVRDDKGDGLHHFHMDTVE-----TQKDIIKHWRK--IAGKKTSGVC 502
>DCE_LACLC (O30418) Glutamate decarboxylase (EC 4.1.1.15)| Length = 466 Score = 67.0 bits (162), Expect = 5e-11 Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRH--DEFEISEFLR 510 GY I + + AM L E +E+TG F I++ +P+V + LK++S + +++++ L Sbjct: 339 GYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLL 398 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P + ++ + R+V+R DF A V D+++ + L+ Sbjct: 399 MKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIDALN 447
>DCE_LACLA (Q9CG20) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 466 Score = 65.9 bits (159), Expect = 1e-10 Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRH--DEFEISEFLR 510 GY I + + AM L + +E+TG F I++ +P+V + LK+ S + +++++ L Sbjct: 339 GYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLL 398 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P + ++ + R+V+R DF A V D+++ + L+ Sbjct: 399 MKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEALN 447
>DCEC_LISIN (Q928K4) Probabl glutamate decarboxylase gamma (EC 4.1.1.15)| (GAD-gamma) Length = 467 Score = 65.1 bits (157), Expect = 2e-10 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDE--FEISEFLR 510 GY I + ++ A+ L + +E++G F I++ +P+V + LKD + +++++ L Sbjct: 340 GYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLL 399 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P D + R V R D AE D LH L+ Sbjct: 400 MKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448
>DCEB_LISIN (Q928R9) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 464 Score = 63.9 bits (154), Expect = 4e-10 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSS--RHDEFEISEFLR 510 GY I + A L +E+TG F+I + +P+V + LKD + + +++++ L+ Sbjct: 337 GYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQ 396 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P + +++ + R V R D AE + D + + EL+ Sbjct: 397 MRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELN 445
>DCEB_LISMO (Q9EYW9) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 464 Score = 63.2 bits (152), Expect = 7e-10 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDE--FEISEFLR 510 GY I + A L +E+TG F+I + +P+V + LKD + + +++++ L+ Sbjct: 337 GYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQ 396 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P +++ + R V R D AE + D + + EL+ Sbjct: 397 MRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELN 445
>DCEB_SHIFL (P69912) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEB_ECOLI (P69910) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEB_ECOL6 (Q8FHG5) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEB_ECO57 (P69911) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEA_SHIFL (Q83PR1) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEA_ECOLI (P69908) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEA_ECOL6 (P69909) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LKD + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEA_ECO57 (P58228) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 60.8 bits (146), Expect = 4e-09 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSK---DQGVPLVAFSLKDSSR--HDEFEISE 519 GY + + + A L + + + G + + D+G+P V F LK+ + +++SE Sbjct: 338 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSE 397 Query: 518 FLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 354 LR GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 398 RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEC_LISMO (Q8Y4K4) Probabl glutamate decarboxylase gamma (EC 4.1.1.15)| (GAD-gamma) Length = 467 Score = 60.8 bits (146), Expect = 4e-09 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSRHDE--FEISEFLR 510 GY I + ++ A+ L + +E++G F I++ +P+V + +K+ + +++++ L Sbjct: 340 GYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLL 399 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P D + R V R D AE D +H L+ Sbjct: 400 MKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448
>DCEA_LISMO (Q9F5P3) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 462 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Frame = -3 Query: 683 GYXNIMDNCQENAMVLKEGLERTGRFNIVSKDQGVPLVAFSLKDSSR--HDEFEISEFLR 510 GY I ++ A+ L + + TG F I + +P+V + LKD + +++++ L+ Sbjct: 335 GYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQ 394 Query: 509 RFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 363 GW VPAY +P + + + R V R D + D+ + + EL+ Sbjct: 395 MKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELN 443
>DCE_YEAST (Q04792) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 585 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 9/82 (10%) Frame = -3 Query: 584 GVPLVAFSLKDSSRHDEFE------ISEFLRRFGWIVPAYTMPP---DAQHVTVLRVVVR 432 GVPLVAF L H+E+ +S LR GWI+P Y +P + VLRVV R Sbjct: 441 GVPLVAFKLSKKF-HEEYPEVPQAILSSLLRGRGWIIPNYPLPKATDGSDEKEVLRVVFR 499 Query: 431 EDFSRTFAERLVIDIEKVLHEL 366 + A+ L++DIE +L +L Sbjct: 500 SEMKLDLAQLLIVDIESILTKL 521
>PFDB_SULAC (Q4JB32) Prefoldin beta subunit (GimC beta subunit)| Length = 125 Score = 36.6 bits (83), Expect = 0.073 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Frame = -3 Query: 479 MPPDAQHVTVLRVVVREDFSRTFAERLVID-----IEKVLHELDALPS-----RSSGPSL 330 +PP+ Q V ++E +R AER VID + KVL EL LPS + G L Sbjct: 5 LPPELQTELVKLQQLQEQLNRVIAERSVIDSQLREVNKVLDELKQLPSDTIIYKIVGNLL 64 Query: 329 QHPNGDTVSEKDLARQREVVSVWKR 255 N D V EK+L Q+ ++ + R Sbjct: 65 VKVNKDNV-EKELDDQKTILELRSR 88
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 35.4 bits (80), Expect = 0.16 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 24/80 (30%) Frame = -2 Query: 669 HGQLPGERDGAQGGAGAHGPVQHR----------------VQGPGRPAGGLLPQ------ 556 HG P +DG GG GA GPV HR + GP PAGG Q Sbjct: 1053 HG--PPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQSGGYDE 1110 Query: 555 --GQQPARRVRDLRVPAPLR 502 QP+ R +D V A ++ Sbjct: 1111 YRADQPSFRAKDYEVDATIK 1130
>GRIK5_RAT (Q63273) Glutamate receptor, ionotropic kainate 5 precursor| (Glutamate receptor KA-2) (KA2) Length = 979 Score = 35.0 bits (79), Expect = 0.21 Identities = 19/38 (50%), Positives = 20/38 (52%) Frame = -2 Query: 642 GAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARRVR 529 GA G AGAHG Q + PG P GG PQ P VR Sbjct: 894 GAGGDAGAHGGPQRLLDDPG-PPGGPRPQAPTPCTHVR 930
>GRIK5_MOUSE (Q61626) Glutamate receptor, ionotropic kainate 5 precursor| (Glutamate receptor KA-2) (KA2) (Glutamate receptor gamma-2) (GluR gamma-2) Length = 979 Score = 35.0 bits (79), Expect = 0.21 Identities = 19/38 (50%), Positives = 20/38 (52%) Frame = -2 Query: 642 GAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARRVR 529 GA G AGAHG Q + PG P GG PQ P VR Sbjct: 894 GAGGDAGAHGGPQRLLDDPG-PPGGPRPQAPTPCTHVR 930
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 34.7 bits (78), Expect = 0.28 Identities = 19/34 (55%), Positives = 20/34 (58%) Frame = -2 Query: 654 GERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQG 553 G R G + GAGA GP R QG RP GG PQG Sbjct: 261 GNRGGQRQGAGAGGP---RPQGGPRPQGGSRPQG 291
>Y1980_VIBPA (Q87N95) UPF0313 protein VP1980| Length = 777 Score = 33.9 bits (76), Expect = 0.47 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = -2 Query: 666 GQLPGERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARR 535 GQ P G GA+ P + QG GRP G P GQ+ +R Sbjct: 733 GQRPASNGQRPSGNGANRPAGSKPQGQGRPQGQGKPAGQRKPKR 776
>CAS4_EPHMU (P18503) Short-chain collagen C4 (Fragment)| Length = 366 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/37 (51%), Positives = 20/37 (54%) Frame = -2 Query: 657 PGERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQ 547 PG +DGAQG AG GP GP P G PQG Q Sbjct: 159 PG-KDGAQGPAGPAGPA-----GPAGPVGPTGPQGPQ 189
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 31.6 bits (70), Expect = 2.4 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -3 Query: 371 ELDALPSRSSGPSLQHPNGDTVSEKDLARQREVVSVWKRAV 249 E D+L SRS G P+ T+SE+ L RQR S W+R + Sbjct: 8456 EFDSLDSRSDGLLSPIPDDSTLSEEQLRRQR---SRWRRVL 8493
>TEN3_TENMO (Q27270) Tenecin-3 precursor| Length = 96 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/32 (50%), Positives = 16/32 (50%) Frame = -2 Query: 666 GQLPGERDGAQGGAGAHGPVQHRVQGPGRPAG 571 GQ G G QGG G G QH GPG AG Sbjct: 55 GQPGGHLGGHQGGIGGTGGQQHGQHGPGTGAG 86
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.8 bits (68), Expect = 4.0 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 338 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 225 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERQLDTQRPQVTMWERDVSSDRQEPG 73
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -2 Query: 657 PGERDGA--QGGAGAHGPVQHRVQGPGRPAGGLLPQ 556 PG R G +GGAG G QGP RP G P+ Sbjct: 114 PGPRPGPRPEGGAGKAGQQPSGAQGPARPESGKTPR 149
>IF2_TREPA (O83861) Translation initiation factor IF-2| Length = 842 Score = 30.8 bits (68), Expect = 4.0 Identities = 24/62 (38%), Positives = 32/62 (51%) Frame = -2 Query: 684 GVQXHHGQLPGERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARRVRDLRVPAPL 505 GV+ G+ P RD ++G G + P V+GP RPAG + G P R PAPL Sbjct: 151 GVRRGEGR-PFARDFSRGSTGGYRPA---VRGPARPAGRV---GSGP-------RGPAPL 196 Query: 504 RV 499 +V Sbjct: 197 QV 198
>SYQ_HAEDU (Q7VLM3) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 556 Score = 30.4 bits (67), Expect = 5.2 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = -3 Query: 527 ISEFLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERL-VIDIEKVLHELDALPS 351 + EF RR G T + L +RED + + VI+ +V+ E A P Sbjct: 313 LREFCRRIG-----VTKQDNVVEYAALEACIREDLNENAPRAMAVINPVRVVIENVAEPE 367 Query: 350 RSSGPSLQHPNGDTVSEKDLARQREV 273 P+ HPN + E+DL RE+ Sbjct: 368 ILKAPN--HPNRPELGERDLPFTREI 391
>TILS_ACIAD (Q6F880) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 459 Score = 30.4 bits (67), Expect = 5.2 Identities = 20/64 (31%), Positives = 34/64 (53%) Frame = -3 Query: 437 VREDFSRTFAERLVIDIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDLARQREVVSVWK 258 ++E SRT L+ D +++LHE+ G L H + + + LARQR+++S W Sbjct: 217 MQEAISRTSI--LMQDADEILHEVLQQDLNQCG-DLNHLDLSRLQQLSLARQRQLLSFWM 273 Query: 257 RAVA 246 + A Sbjct: 274 KGKA 277
>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (SLP-65) Length = 456 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 79 GSNNGARRTINPAP*KPSRXREA*HKIITEIKSSRTAGEVNRLSSAQQTP 228 G N+GA T +P P PS A K T +K++ A + N S ++ P Sbjct: 226 GRNSGAWETKSPPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKP 275
>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 338 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 225 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 338 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 225 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 338 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 225 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 338 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 225 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = -2 Query: 663 QLPGERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQ 547 Q PG Q G G +GP Q GPG A GQQ Sbjct: 46 QGPGGYGPGQQGPGRYGPGQQGPSGPGSAAAAAAGSGQQ 84
>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 945 Score = 30.0 bits (66), Expect = 6.9 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -2 Query: 660 LPGERDGAQGGAGAHGPVQHRVQGP---GRPAGGLLPQGQQPARR 535 LP E A+GG G G +GP R G P+GQQPA R Sbjct: 68 LPAEPAAARGGGGGGGGCGGGGRGPQARARGGGPGEPRGQQPASR 112
>PFDB_SULTO (Q975H2) Prefoldin beta subunit (GimC beta subunit)| Length = 125 Score = 30.0 bits (66), Expect = 6.9 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 10/85 (11%) Frame = -3 Query: 479 MPPDAQHVTVLRVVVREDFSRTFAERLVID-----IEKVLHELDALPSRSS-----GPSL 330 +PP+ Q V +++ +R E+ VID + K+L EL LP+ ++ G L Sbjct: 5 IPPELQTQLVKLQQLQDQLNRLLTEKNVIDSELREVNKILQELSQLPAGTTVYKIVGNLL 64 Query: 329 QHPNGDTVSEKDLARQREVVSVWKR 255 + +TV +K+L ++E++ + R Sbjct: 65 VKTDKETV-QKELDDRKEILELRSR 88
>MCF2L_HUMAN (O15068) Guanine nucleotide exchange factor DBS (DBL's big sister)| (MCF2 transforming sequence-like protein) (Fragment) Length = 1108 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 8/43 (18%) Frame = -2 Query: 654 GERDGAQGGAG--------AHGPVQHRVQGPGRPAGGLLPQGQ 550 G+ +GGAG HGP R PGR AGG+ P G+ Sbjct: 10 GQAMPLRGGAGPSPASHGPTHGPSDPRTCLPGRGAGGMRPHGR 52
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 29.6 bits (65), Expect = 9.0 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 663 QLPGERDGAQGGAGAHGPVQHRVQGP--GRPAGGLLPQGQQPARRVRDLRVPAP 508 Q P G QGG G+ G +QGP P GL P+G Q R+ + PAP Sbjct: 750 QGPPHPHGIQGGPGSQG-----IQGPVSQGPLMGLNPRGMQGPPGPRENQGPAP 798
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 29.6 bits (65), Expect = 9.0 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = -2 Query: 660 LPGERD-----GAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARRVRDLRVPAPLRVD 496 LPGE+ G QG G GP V GP P G +GQ+ + +P P +D Sbjct: 366 LPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD 425
>NIFM_AZOVI (P14890) Protein nifM| Length = 292 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -3 Query: 467 AQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDL 291 AQH + V + EDF E IE +L L P R + +++H T + L Sbjct: 143 AQHKAHILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGL 201
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2 Query: 654 GERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQ 547 G R G G + P R +G RPAGG P+GQ+ Sbjct: 339 GYRPGGPRPEGGYRPGAPRPEGGYRPAGGPRPEGQR 374
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -2 Query: 642 GAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARR 535 GA+ G G GPV R GPGR AGG Q Q +R Sbjct: 423 GARPGTG--GPVGARSGGPGRGAGGGQGQSQGQGQR 456
>UVRC_BRUSU (Q8G1L5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = +3 Query: 306 HRVAVGVLQGRPAAARGERVELVEHLLDVDDEALGEGAAE 425 H+V V V Q RGE+ ELV+H L EALG AE Sbjct: 326 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 359
>UVRC_BRUME (Q8YGA9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = +3 Query: 306 HRVAVGVLQGRPAAARGERVELVEHLLDVDDEALGEGAAE 425 H+V V V Q RGE+ ELV+H L EALG AE Sbjct: 326 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 359
>UVRC_BRUA2 (Q2YN35) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = +3 Query: 306 HRVAVGVLQGRPAAARGERVELVEHLLDVDDEALGEGAAE 425 H+V V V Q RGE+ ELV+H L EALG AE Sbjct: 326 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 359
>IF2_COREF (Q8FPA7) Translation initiation factor IF-2| Length = 964 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Frame = -2 Query: 666 GQLPGERDGA---QGGAGAHGPVQHRVQGPGRPAGGLLP--QGQQPAR 538 GQ PG G QGG A Q R G RP+ ++P GQ PA+ Sbjct: 240 GQRPGPGSGGPRPQGGNAAGAASQERQGGGRRPSPAMMPPTPGQMPAK 287
>HLY1_AERHY (P55870) Hemolysin ahh1 precursor| Length = 577 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -2 Query: 666 GQLPGERDGAQGGAGAHGPVQHRVQGPGRPAGGLLPQGQQPARRVRDLRVPAPLR 502 G P R + A P R+ G PA + Q AR +RD RVPA L+ Sbjct: 291 GPRPSWRRRPSSASSASSPTTPRITGLNAPAERPEGEFQLGARSIRDRRVPALLQ 345
>UVRC_BRUAB (Q57E41) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 627 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = +3 Query: 306 HRVAVGVLQGRPAAARGERVELVEHLLDVDDEALGEGAAE 425 H+V V V Q RGE+ ELV+H L EALG AE Sbjct: 342 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 375
>TRMD_MYCPA (Q73VN9) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 239 Score = 29.6 bits (65), Expect = 9.0 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = -3 Query: 551 SSRHDEFEISEFLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLH 372 +SRHD+ RR P+YT PP + + V V++ D +R A R + +++ Sbjct: 164 ASRHDDSHSPALDRRLEG--PSYTRPPSWRGLDVPEVLLSGDHARIAAWRREVSLQRTRE 221 Query: 371 ELDALPSRSSGP 336 L + GP Sbjct: 222 RRPELLADPVGP 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,632,251 Number of Sequences: 219361 Number of extensions: 1312430 Number of successful extensions: 5287 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 4956 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5228 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
