ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35c15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 7e-19
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
3dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
4dbj|AK066355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 7e-19
5ref|XM_464513.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.56
6ref|XM_756473.1| Ustilago maydis 521 hypothetical protein (UM054... 44 0.56
7gb|AC105270.2| Homo sapiens chromosome 1 clone RP4-684L20, compl... 44 0.56
8gb|AC093559.2| Homo sapiens chromosome 1 clone RP11-138K16, comp... 44 0.56
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
10dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
11dbj|AB118005.1| Oryza sativa (japonica cultivar-group) bip118 mR... 44 0.56
12gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 2.2
13emb|CR513786.5| Zebrafish DNA sequence from clone CH211-92F19 in... 42 2.2
14gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, compl... 42 2.2
15gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, com... 42 2.2
16gb|AE000512.1| Thermotoga maritima MSB8, complete genome 42 2.2
17ref|NM_126110.1| Arabidopsis thaliana 3'-5' exonuclease/ DNA bin... 40 8.8
18gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, com... 40 8.8
19gb|AC166174.2| Mus musculus BAC clone RP23-41B11 from chromosome... 40 8.8
20gb|AC166816.2| Mus musculus chromosome 5, clone RP24-321O22, com... 40 8.8
21ref|XM_801732.1| Trypanosoma cruzi strain CL Brener DNA-repair p... 40 8.8
22ref|XM_812865.1| Trypanosoma cruzi strain CL Brener DNA-repair p... 40 8.8
23emb|AL592067.4| Human DNA sequence from clone RP11-361H7 on chro... 40 8.8
24emb|AL355003.10| Human DNA sequence from clone RP11-753M10 on ch... 40 8.8
25emb|AL157700.13| Human DNA sequence from clone RP6-201G10 on chr... 40 8.8
26emb|AL023803.3|HS616B8 Human DNA sequence from clone RP4-616B8 o... 40 8.8
27gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, comple... 40 8.8
28gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Can... 40 8.8
29emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, ... 40 8.8
30gb|AC108046.3| Homo sapiens BAC clone RP11-308K2 from 4, complet... 40 8.8
31ref|NM_001034950.1| Rattus norvegicus urinary protein 2 (Rup2), ... 40 8.8
32gb|AC012673.37| Homo sapiens 12 BAC RP11-431G15 (Roswell Park Ca... 40 8.8
33gb|AF368860.1|AF368860 Rattus norvegicus 3' non-translated beta-... 40 8.8
34tpg|BK001429.1| TPA: TPA_exp: Homo sapiens NOELIN3 (OLFM3) gene,... 40 8.8
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
36gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-5... 40 8.8
37emb|AL670024.7| Mouse DNA sequence from clone RP23-254F7 on chro... 40 8.8
38dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.8
39gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, com... 40 8.8
40emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chr... 40 8.8
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
42emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, ... 40 8.8
43emb|AL356280.21| Human DNA sequence from clone RP11-82O2 on chro... 40 8.8
44emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327... 40 8.8
45gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosom... 40 8.8 
>dbj|AK061909.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A02, full
           insert sequence
          Length = 1392

 Score =  103 bits (52), Expect = 7e-19
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                       
Query: 516 tgggaggccctttggtcgaggctcagacgaactggacggcttgaaggattggtacttact 575
           |||||||||||||  || |||||||||||| |||| ||||||||||||  ||||||| ||
Sbjct: 858 tgggaggccctttcatccaggctcagacgagctgggcggcttgaaggaacggtactttct 799

                                                                       
Query: 576 gttgtgactgctgaggttgtgttctttgagcgaccaagctttggtgatcgangtctggtg 635
              |||  | ||||| |||||||||||||||| |||||||||||||||| |  |||||||
Sbjct: 798 tcagtgcttactgagcttgtgttctttgagcggccaagctttggtgatctagctctggtg 739

                  
Query: 636 gtaggga 642
           |||||||
Sbjct: 738 gtaggga 732



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 439 ctgtctgctctgatggcaatttggggagagatttccgttgggacttc 485
           |||| ||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 944 ctgtttgctctgatggcagtttggggagagacttccgttggggcttc 898
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  103 bits (52), Expect = 7e-19
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                            
Query: 516      tgggaggccctttggtcgaggctcagacgaactggacggcttgaaggattggtacttact 575
                |||||||||||||  || |||||||||||| |||| ||||||||||||  ||||||| ||
Sbjct: 23708168 tgggaggccctttcatccaggctcagacgagctgggcggcttgaaggaacggtactttct 23708227

                                                                            
Query: 576      gttgtgactgctgaggttgtgttctttgagcgaccaagctttggtgatcgangtctggtg 635
                   |||  | ||||| |||||||||||||||| |||||||||||||||| |  |||||||
Sbjct: 23708228 tcagtgcttactgagcttgtgttctttgagcggccaagctttggtgatctagctctggtg 23708287

                       
Query: 636      gtaggga 642
                |||||||
Sbjct: 23708288 gtaggga 23708294



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 439      ctgtctgctctgatggcaatttggggagagatttccgttgggacttc 485
                |||| ||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 23708082 ctgtttgctctgatggcagtttggggagagacttccgttggggcttc 23708128
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>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0029C06
          Length = 156500

 Score =  103 bits (52), Expect = 7e-19
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                         
Query: 516   tgggaggccctttggtcgaggctcagacgaactggacggcttgaaggattggtacttact 575
             |||||||||||||  || |||||||||||| |||| ||||||||||||  ||||||| ||
Sbjct: 56244 tgggaggccctttcatccaggctcagacgagctgggcggcttgaaggaacggtactttct 56303

                                                                         
Query: 576   gttgtgactgctgaggttgtgttctttgagcgaccaagctttggtgatcgangtctggtg 635
                |||  | ||||| |||||||||||||||| |||||||||||||||| |  |||||||
Sbjct: 56304 tcagtgcttactgagcttgtgttctttgagcggccaagctttggtgatctagctctggtg 56363

                    
Query: 636   gtaggga 642
             |||||||
Sbjct: 56364 gtaggga 56370



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 439   ctgtctgctctgatggcaatttggggagagatttccgttgggacttc 485
             |||| ||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 56158 ctgtttgctctgatggcagtttggggagagacttccgttggggcttc 56204
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>dbj|AK066355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067N05, full
            insert sequence
          Length = 1772

 Score =  103 bits (52), Expect = 7e-19
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                        
Query: 516  tgggaggccctttggtcgaggctcagacgaactggacggcttgaaggattggtacttact 575
            |||||||||||||  || |||||||||||| |||| ||||||||||||  ||||||| ||
Sbjct: 1234 tgggaggccctttcatccaggctcagacgagctgggcggcttgaaggaacggtactttct 1175

                                                                        
Query: 576  gttgtgactgctgaggttgtgttctttgagcgaccaagctttggtgatcgangtctggtg 635
               |||  | ||||| |||||||||||||||| |||||||||||||||| |  |||||||
Sbjct: 1174 tcagtgcttactgagcttgtgttctttgagcggccaagctttggtgatctagctctggtg 1115

                   
Query: 636  gtaggga 642
            |||||||
Sbjct: 1114 gtaggga 1108



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 439  ctgtctgctctgatggcaatttggggagagatttccgttgggacttc 485
            |||| ||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 1320 ctgtttgctctgatggcagtttggggagagacttccgttggggcttc 1274
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>ref|XM_464513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1188

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 595 tgttctttgagcgaccaagctttggtgatc 624
           ||||||| |||||||| |||||||||||||
Sbjct: 838 tgttcttggagcgaccgagctttggtgatc 809
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>ref|XM_756473.1| Ustilago maydis 521 hypothetical protein (UM05419.1) partial mRNA
          Length = 1314

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 482  cttcttgggagcaggtgttgtcttgg 507
            |||||||||||||||||||| |||||
Sbjct: 1227 cttcttgggagcaggtgttgccttgg 1202
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>gb|AC105270.2| Homo sapiens chromosome 1 clone RP4-684L20, complete sequence
          Length = 158043

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 75    tcatatgcaaatgttactagct 96
             ||||||||||||||||||||||
Sbjct: 52885 tcatatgcaaatgttactagct 52864
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>gb|AC093559.2| Homo sapiens chromosome 1 clone RP11-138K16, complete sequence
          Length = 175909

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 75     tcatatgcaaatgttactagct 96
              ||||||||||||||||||||||
Sbjct: 172303 tcatatgcaaatgttactagct 172282
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 595     tgttctttgagcgaccaagctttggtgatc 624
               ||||||| |||||||| |||||||||||||
Sbjct: 5626663 tgttcttggagcgaccgagctttggtgatc 5626634
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 595   tgttctttgagcgaccaagctttggtgatc 624
             ||||||| |||||||| |||||||||||||
Sbjct: 54399 tgttcttggagcgaccgagctttggtgatc 54370
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>dbj|AB118005.1| Oryza sativa (japonica cultivar-group) bip118 mRNA for BRI1-KD
           interacting protein 118, partial cds
          Length = 1333

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 595 tgttctttgagcgaccaagctttggtgatc 624
           ||||||| |||||||| |||||||||||||
Sbjct: 656 tgttcttggagcgaccgagctttggtgatc 627
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 495     ggtgttgtcttggcgctgttttggg 519
               |||||||||||||||||| ||||||
Sbjct: 3291310 ggtgttgtcttggcgctgatttggg 3291286
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>emb|CR513786.5| Zebrafish DNA sequence from clone CH211-92F19 in linkage group 14,
             complete sequence
          Length = 97391

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 582   actgctgaggttgtgttcttt 602
             |||||||||||||||||||||
Sbjct: 53505 actgctgaggttgtgttcttt 53485
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>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence
          Length = 207950

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 262   ggctgaggcatgactctcagctttc 286
             |||||||||||||| ||||||||||
Sbjct: 42383 ggctgaggcatgacactcagctttc 42359
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>gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, complete sequence
          Length = 185664

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 262   ggctgaggcatgactctcagctttc 286
             |||||||||||||| ||||||||||
Sbjct: 43643 ggctgaggcatgacactcagctttc 43667
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 12      aaagaagatgagggaaaactc 32
               |||||||||||||||||||||
Sbjct: 1634337 aaagaagatgagggaaaactc 1634357
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>ref|NM_126110.1| Arabidopsis thaliana 3'-5' exonuclease/ DNA binding / DNA-directed
           DNA polymerase/ nucleotide binding AT5G67100 mRNA,
           complete cds
          Length = 4479

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 tcatctggagtaacctgagc 349
           ||||||||||||||||||||
Sbjct: 563 tcatctggagtaacctgagc 544
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>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence
          Length = 197551

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    ggcaatttggggagagattt 472
              ||||||||||||||||||||
Sbjct: 175477 ggcaatttggggagagattt 175458
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>gb|AC166174.2| Mus musculus BAC clone RP23-41B11 from chromosome 12, complete sequence
          Length = 233084

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    agaagatgagggaaaactca 33
             ||||||||||||||||||||
Sbjct: 35781 agaagatgagggaaaactca 35800
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>gb|AC166816.2| Mus musculus chromosome 5, clone RP24-321O22, complete sequence
          Length = 156357

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    ggcaatttggggagagattt 472
              ||||||||||||||||||||
Sbjct: 141601 ggcaatttggggagagattt 141620
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>ref|XM_801732.1| Trypanosoma cruzi strain CL Brener DNA-repair protein
           (Tc00.1047053510665.40) partial mRNA
          Length = 2430

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 7   gcggtaaagaag-atgagggaaaactca 33
           |||||||||||| |||||||||||||||
Sbjct: 388 gcggtaaagaaggatgagggaaaactca 415
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>ref|XM_812865.1| Trypanosoma cruzi strain CL Brener DNA-repair protein
           (Tc00.1047053507011.140) partial mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 7   gcggtaaagaag-atgagggaaaactca 33
           |||||||||||| |||||||||||||||
Sbjct: 370 gcggtaaagaaggatgagggaaaactca 397
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>emb|AL592067.4| Human DNA sequence from clone RP11-361H7 on chromosome 13, complete
           sequence
          Length = 83141

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 87  gttactagctacaaataata 106
           ||||||||||||||||||||
Sbjct: 497 gttactagctacaaataata 478
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>emb|AL355003.10| Human DNA sequence from clone RP11-753M10 on chromosome 13, complete
              sequence
          Length = 133309

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     gttactagctacaaataata 106
              ||||||||||||||||||||
Sbjct: 131806 gttactagctacaaataata 131787
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>emb|AL157700.13| Human DNA sequence from clone RP6-201G10 on chromosome Xq12-13.1 Contains
              the 3' end of the OPHN1 gene for oligophrenin 1, complete
              sequence
          Length = 190611

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 586    ctgaggttgtgttctttgag 605
              ||||||||||||||||||||
Sbjct: 133616 ctgaggttgtgttctttgag 133597
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>emb|AL023803.3|HS616B8 Human DNA sequence from clone RP4-616B8 on chromosome 20q11.22-12
              Contains the DDX35 gene for DEAD/H box polypeptide 35, the
              NPM1P19 gene for nucleophosmin 1 (nucleolar phosphoprotein
              B23, numatrin) pseudogene 19, the C20orf129 gene for
              chromosome 20 open reading frame 129, the 3' end of the
              PPP1R16B gene for protein phosphatase 1 regulatory
              (inhibitory) subunit 16B and four CpG islands, complete
              sequence
          Length = 155379

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    aacaaaaatgcagaaatggg 260
              ||||||||||||||||||||
Sbjct: 129245 aacaaaaatgcagaaatggg 129226
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>gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, complete sequence
          Length = 164043

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 455  caatttggggagagatttcc 474
            ||||||||||||||||||||
Sbjct: 9227 caatttggggagagatttcc 9208
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>gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 154016

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   aatgggaggctgaggcatgactct 278
             ||||||||| ||||||||||||||
Sbjct: 71275 aatgggagggtgaggcatgactct 71298
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>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence
          Length = 169191

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  agaagatatagaagttgcaa 426
            ||||||||||||||||||||
Sbjct: 4482 agaagatatagaagttgcaa 4463
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>gb|AC108046.3| Homo sapiens BAC clone RP11-308K2 from 4, complete sequence
          Length = 177483

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   cccaaataacaaaaatgcag 253
             ||||||||||||||||||||
Sbjct: 34193 cccaaataacaaaaatgcag 34212
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>ref|NM_001034950.1| Rattus norvegicus urinary protein 2 (Rup2), mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 tgcagaaatgggaggctgag 268
           ||||||||||||||||||||
Sbjct: 917 tgcagaaatgggaggctgag 898
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>gb|AC012673.37| Homo sapiens 12 BAC RP11-431G15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 47302

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aacacaacacaactgagaag 146
             ||||||||||||||||||||
Sbjct: 20922 aacacaacacaactgagaag 20941
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>gb|AF368860.1|AF368860 Rattus norvegicus 3' non-translated beta-F1-ATPase mRNA-binding
           protein mRNA, complete cds
          Length = 1197

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 tgcagaaatgggaggctgag 268
           ||||||||||||||||||||
Sbjct: 917 tgcagaaatgggaggctgag 898
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>tpg|BK001429.1| TPA: TPA_exp: Homo sapiens NOELIN3 (OLFM3) gene, complete cds;
             alternatively spliced
          Length = 195421

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    gaagatgagggaaaactcat 34
             ||||||||||||||||||||
Sbjct: 91930 gaagatgagggaaaactcat 91911
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 13       aagaagatgagggaaaactc 32
                ||||||||||||||||||||
Sbjct: 26075603 aagaagatgagggaaaactc 26075622
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>gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-55A13, complete sequence
          Length = 191583

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    tgggaggctgaggcatgact 276
              ||||||||||||||||||||
Sbjct: 117163 tgggaggctgaggcatgact 117144
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>emb|AL670024.7| Mouse DNA sequence from clone RP23-254F7 on chromosome X, complete
             sequence
          Length = 199747

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tcatatgcaaatgttactag 94
             ||||||||||||||||||||
Sbjct: 66743 tcatatgcaaatgttactag 66762
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>dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1
          Length = 74342

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   tcatctggagtaacctgagc 349
             ||||||||||||||||||||
Sbjct: 19052 tcatctggagtaacctgagc 19033
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>gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, complete sequence
          Length = 172025

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   atgttccaaactccaggtga 191
             ||||||||||||||||||||
Sbjct: 14604 atgttccaaactccaggtga 14623
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>emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chromosome 2, complete
             sequence
          Length = 215139

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   agaaatgggaggctgaggca 271
             ||||||||||||||||||||
Sbjct: 94009 agaaatgggaggctgaggca 93990
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 13       aagaagatgagggaaaactc 32
                ||||||||||||||||||||
Sbjct: 26003779 aagaagatgagggaaaactc 26003798
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>emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, complete sequence
          Length = 174986

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    aaaaatgcagaaatgggagg 263
              ||||||||||||||||||||
Sbjct: 130409 aaaaatgcagaaatgggagg 130428
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>emb|AL356280.21| Human DNA sequence from clone RP11-82O2 on chromosome 1 Contains the 5'
             end of the OLFM3 gene for olfactomedin 3 and a DNAJ family
             pseudogene, complete sequence
          Length = 173251

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    gaagatgagggaaaactcat 34
             ||||||||||||||||||||
Sbjct: 59592 gaagatgagggaaaactcat 59611
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>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161806

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aagaagatgagggaaaactc 32
             ||||||||||||||||||||
Sbjct: 36068 aagaagatgagggaaaactc 36049
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>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete
             sequence
          Length = 200663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   aatgggaggctgaggcatgactct 278
             ||||||||| ||||||||||||||
Sbjct: 97488 aatgggagggtgaggcatgactct 97511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,770,335
Number of Sequences: 3902068
Number of extensions: 7770335
Number of successful extensions: 719606
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 718944
Number of HSP's gapped (non-prelim): 660
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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