ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2d07 |
|---|---|
| Clone Library Name | barley_pub |
>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1302 Score = 33.1 bits (74), Expect = 0.61 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 391 CYPLHQIGPCAHRCQANQSSELAHRVPHDQVVLFQSDPPNHRNGKPLVPRSQRCYCCLHV 570 C P H +GP +C A++ P ++ + F+ P H+ PL R R CC V Sbjct: 380 CPPGHSLGPSRTQCIADK--------PEEKSLCFRLVSPEHQCQHPLTTRLTRQLCCCSV 431
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 32.7 bits (73), Expect = 0.80 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 252 SSFSTCSHSGGEWLSCSSCVCALAGSAGAETTQGSSSNA 368 SS S+CSHS S SS C+ A S+ + +T SSS++ Sbjct: 2151 SSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189
>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1268 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 391 CYPLHQIGPCAHRCQANQSSELAHRVPHDQVVLFQSDPPNHRNGKPLVPRSQRCYCCLHV 570 C P H +GP A +C A++ P ++ + F+ H+ PL R R CC V Sbjct: 378 CPPGHSLGPLAAQCIADK--------PEEKSLCFRLVSTEHQCQHPLTTRLTRQLCCCSV 429
>HTF4_CHICK (P30985) Transcription factor 12 (Transcription factor HTF-4)| (E-box-binding protein) (Class A helix-loop-helix transcription factor GE1) (Fragment) Length = 657 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = -3 Query: 415 AQSDEADSKTASQY--VSALLEEPCVVSAPAEPASAHTHDEQLSHSPPEWEHVLKED 251 AQS E + KT Y +S L+ V P E S H ++ H PP + + +D Sbjct: 461 AQSTELNHKTQESYRALSGGLQSQSVAIGPTEIKSEHKEKDENIHEPPSSDDMKSDD 517
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = +3 Query: 252 SSFSTCSHSGGEWLSCSSCVCALAGSAGAETTQGSSSNA 368 SS S+CSHS S SS C+ A S+ + ++ SSS++ Sbjct: 2151 SSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSS 2189
>RNZ1_HUMAN (Q9H777) Zinc phosphodiesterase ELAC protein 1 (EC 3.1.26.11)| (Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3 endonuclease 1) (ElaC homolog protein 1) (Deleted in Ma29) Length = 363 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/66 (28%), Positives = 30/66 (45%) Frame = +1 Query: 349 RALQAMH*RTGLRFCYPLHQIGPCAHRCQANQSSELAHRVPHDQVVLFQSDPPNHRNGKP 528 R ++ H T L F Y +H++ P A +C A + E AH V PP G+ Sbjct: 105 RTMELSH--TELVFHYVVHELVPTADQCPAEELKEFAH-------VNRADSPPKEEQGRT 155 Query: 529 LVPRSQ 546 ++ S+ Sbjct: 156 ILLDSE 161
>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner| cell wall protein) Length = 238 Score = 30.4 bits (67), Expect = 4.0 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = +3 Query: 294 SCSSCVCALA-GSAGAETTQGSSSNALTYWLAVLLSASSDWALRPPLSGKSVF*ISSSCA 470 SCS +L S+ A ++ SSS A + A SASS + S SSS A Sbjct: 82 SCSEQNASLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSSASSSTKASSSSAA 141 Query: 471 PRPSRFVSK*PAQSSEWQTSCPS 539 P S+ S + SS T PS Sbjct: 142 PSSSKASSTESSSSSSSSTKAPS 164
>TIM54_CRYNE (Q5K8Z5) Mitochondrial import inner membrane translocase subunit| TIM54 Length = 458 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 2/84 (2%) Frame = -3 Query: 523 CHSDDWAGHFETKRL--GRGAHDELIQKTDLPDNGGRRAQSDEADSKTASQYVSALLEEP 350 C D+WA E ++ G G + + + AD+ S + P Sbjct: 207 CGVDEWAWETEVEKTLAGDGVFESVESPVEPAVETAETVVEPTADAVPKSNFGFLARPAP 266 Query: 349 CVVSAPAEPASAHTHDEQLSHSPP 278 APA PA HT L +PP Sbjct: 267 VTPGAPAIPAHLHTPPSPLPPTPP 290
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 30.0 bits (66), Expect = 5.2 Identities = 28/103 (27%), Positives = 46/103 (44%) Frame = +3 Query: 237 PGRKKSSFSTCSHSGGEWLSCSSCVCALAGSAGAETTQGSSSNALTYWLAVLLSASSDWA 416 P SS S+ S S S SS + + S+ + ++ SSS++ S+SS + Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSS 205 Query: 417 LRPPLSGKSVF*ISSSCAPRPSRFVSK*PAQSSEWQTSCPSFT 545 P++ + SSS + S S P+ SS + T+ S T Sbjct: 206 SSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSST 248
>SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) Length = 783 Score = 30.0 bits (66), Expect = 5.2 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Frame = -3 Query: 493 ETKRLGRGAHDELIQKTDLPDNGGRRAQSDEADSKTASQYVSALLEEPCVVSAP---AEP 323 E R G G +E + LP + GRR E ++ + L PC+V +P A P Sbjct: 446 EEARQGPGLEEEQDTQESLPSSTGRRHTLAEVSTRLSP------LTAPCIVVSPSTTASP 499 Query: 322 ASAHTHDEQLSHS 284 A + D L+ S Sbjct: 500 AEGTSSDSCLTFS 512
>TRPC2_RAT (Q9R283) Short transient receptor potential channel 2 (TrpC2)| (rTRP2) Length = 885 Score = 29.3 bits (64), Expect = 8.8 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Frame = +3 Query: 234 FPGRKKSSFSTCSH----SGGEWLSCSSCVCALAGSAGAETTQGSSSNALTYW----LAV 389 F GR +S + T H +G W C +G S L +W + + Sbjct: 409 FKGRSQSVWETSLHMIWVTGFLWFECKEV-----------WIEGLRSYLLDWWNFLDVVI 457 Query: 390 LLSASSDWALRPPLSGKSVF*ISSSCAPRPSRFVSK*PAQSSEWQTSCPSFTALLLLS 563 L + +ALR L+G + + R+ + A+ SEW+T P F A +L + Sbjct: 458 LSLYLASFALRLLLAGLAYMHCRDASDSSTCRYFTT--AERSEWRTEDPQFLAEVLFA 513 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,164,916 Number of Sequences: 219361 Number of extensions: 2036693 Number of successful extensions: 5326 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5320 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
