ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... 42 0.002
2RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... 41 0.003
3RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... 41 0.004
4VE5_RHPV1 (P24834) Probable protein E5 33 1.1
5CELF_VZVD (P09261) Cell fusion protein precursor 32 1.4
6ITB2_MOUSE (P11835) Integrin beta-2 precursor (Cell surface adhe... 31 4.1
7LPLB_BACSU (P39128) Protein lplB 30 7.0

>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = -1

Query: 690 LKSEFPELLSIKESLIKNVFEPNRK 616
           L  EFPE+LSIKESL+K VFEPN++
Sbjct: 642 LSKEFPEMLSIKESLLKYVFEPNKR 666



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>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = -1

Query: 690 LKSEFPELLSIKESLIKNVFEPNRK 616
           L  EFPE+LSIK+SLIK VFEPN++
Sbjct: 639 LSKEFPEMLSIKDSLIKYVFEPNKR 663



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>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = -1

Query: 690 LKSEFPELLSIKESLIKNVFEPNRK 616
           LK EFPELLSIKESLIK  + PN+K
Sbjct: 644 LKKEFPELLSIKESLIKYAYGPNKK 668



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>VE5_RHPV1 (P24834) Probable protein E5|
          Length = 157

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = -3

Query: 376 FMRCHSCTWCCALCM--LFTCCFSWFSYLKSVLA-------DSTYMCSFVGPYLKFASPK 224
           F  C  C +C ALC   L + CF  F    SV A        S  +CSF   ++ F +P 
Sbjct: 42  FWLCFCCCFCLALCFVHLLSRCFCVFPVCLSVAAYAVVLGVHSEPVCSFWSVFVLFFNPV 101

Query: 223 HVHSEAKRVCQLMRPD 176
              + A   C L + D
Sbjct: 102 AFDTPACPQCGLQQND 117



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>CELF_VZVD (P09261) Cell fusion protein precursor|
          Length = 340

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 367 CHSCTWCCALCMLFTCCFSWFSYLKSVLADSTYMCSFVGPYLKFASPKHVHSEAKRVCQL 188
           CH+  WC  L M+F   F+WF Y               G YL+F   + +    +  C+L
Sbjct: 112 CHAYFWCVQLKMIF---FAWFVY---------------GMYLQFRRIRRMFGPFRSSCEL 153

Query: 187 MRP 179
           + P
Sbjct: 154 ISP 156



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>ITB2_MOUSE (P11835) Integrin beta-2 precursor (Cell surface adhesion|
           glycoproteins LFA-1/CR3/P150,95 beta-subunit)
           (Complement receptor C3 beta-subunit) (CD18 antigen)
          Length = 771

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 111 CNRLVFGAGCGP--CQSLPCLLLHKHNNHTDCFQSLRF 4
           CNR +   G  P  C+  P    H  +NHT C + L+F
Sbjct: 599 CNRCICDEGYQPPMCEDCPSCGSHCRDNHTSCAECLKF 636



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>LPLB_BACSU (P39128) Protein lplB|
          Length = 318

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 568 FLIS*YISRWQLWPILLWYSSRHTYLRFFVTHYVSLEYYQMFYVVVDMF 422
           FLI  Y+    +W +L+ +     YL F+ + +V  +Y++ F++  D F
Sbjct: 42  FLIFKYLP---MWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFF 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,002,975
Number of Sequences: 219361
Number of extensions: 2011069
Number of successful extensions: 4607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4603
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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