ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... 32 2.0
2CSN10_YEAST (Q12348) COP9 signalosome complex subunit 10 32 2.6
3NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precur... 30 5.8
4WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY ... 30 10.0
5BAIP3_HUMAN (O94812) BAI1-associated protein 3 (BAP3) 30 10.0

>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1734

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 587  TKTSRSPLSQSLSQNQR*FQSRWSPRNPHALLAKTPPQGNRLGPVVALAAG 435
            T  S S L++SLS  +       SP + H+L  ++PPQG R+ P    + G
Sbjct: 1182 TSRSLSSLNRSLSSGE---SGPGSPTHSHSLSPRSPPQGYRVAPDAVHSVG 1229



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>CSN10_YEAST (Q12348) COP9 signalosome complex subunit 10|
          Length = 645

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
 Frame = -2

Query: 388 RHLLSAGKNSPEGAEGRFHWFMINGYIYISIRLKLVIKVLRAQCISKL*YRSVLARLSSP 209
           +HL   GK         FH F+++G+I+ S    ++++ +    I+   +  V   L SP
Sbjct: 372 KHLEEMGKLRERDITSLFHKFILSGFIFTS----MILEAISTDKINPFGFEQVKIALGSP 427

Query: 208 VSRGLLYSGRC---LTLQ*VSCE---TPFLSVVVMRAKLLEIWNAGAAHMYRRLSFMYIL 47
           +   L    RC   L L+ ++      P LSVV+        + A    ++R+++ +Y  
Sbjct: 428 IVNVLEDVYRCFAQLELRQLNASISLIPELSVVLSGIIQDIYYLAQTLKLWRKIARLYSC 487

Query: 46  YNVSVI 29
            ++S I
Sbjct: 488 ISISDI 493



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>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier
           family 24 member 4)
          Length = 605

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = +2

Query: 437 PPLERPPDP----ADFLAGVSLPTARGD 508
           PP   PP+P    ADFL+  S+P ARGD
Sbjct: 379 PPQPPPPEPEPVEADFLSPFSVPEARGD 406



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>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding|
           protein 7)
          Length = 353

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = -1

Query: 692 VNTRSRESSRLQVITRLNSSRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSP 513
           V    ++     V+T+  + ++      FR +CP+    R PLS + + NQ   ++  S 
Sbjct: 115 VEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKNGSSS 174

Query: 512 RNPHALLAKTPPQGNRLGPVVALAA 438
            +P  +LA   P      P   ++A
Sbjct: 175 SSP-PMLANGAPSTINFAPSPPVSA 198



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>BAIP3_HUMAN (O94812) BAI1-associated protein 3 (BAP3)|
          Length = 1187

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 380  PLSRKELPGRSRRTISLVYDQRVYIYIYPAETCHKGVAC 264
            PL R +      RT+  VYD+  Y  + PAE C +  AC
Sbjct: 1061 PLVRSQRTQVKTRTLHPVYDELFYFSV-PAEACRRRAAC 1098


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,845,807
Number of Sequences: 219361
Number of extensions: 2149683
Number of successful extensions: 5745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5745
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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