| Clone Name | rbags34m18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466991.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2325 Score = 63.9 bits (32), Expect = 7e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 509 taacagggttaaaatgtcctgtgagaaatagc 540 |||||||||||||||||||||||||||||||| Sbjct: 1987 taacagggttaaaatgtcctgtgagaaatagc 1956 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 608 aacaggcacctagcaatgtacactgccgtgtgcct 642 ||||||||||||||||| |||||| | |||||||| Sbjct: 1890 aacaggcacctagcaatatacactactgtgtgcct 1856
>ref|XM_466992.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2433 Score = 63.9 bits (32), Expect = 7e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 509 taacagggttaaaatgtcctgtgagaaatagc 540 |||||||||||||||||||||||||||||||| Sbjct: 2090 taacagggttaaaatgtcctgtgagaaatagc 2059 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 608 aacaggcacctagcaatgtacactgccgtgtgcct 642 ||||||||||||||||| |||||| | |||||||| Sbjct: 1993 aacaggcacctagcaatatacactactgtgtgcct 1959
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 7e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 509 taacagggttaaaatgtcctgtgagaaatagc 540 |||||||||||||||||||||||||||||||| Sbjct: 25792590 taacagggttaaaatgtcctgtgagaaatagc 25792559 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 608 aacaggcacctagcaatgtacactgccgtgtgcct 642 ||||||||||||||||| |||||| | |||||||| Sbjct: 25792493 aacaggcacctagcaatatacactactgtgtgcct 25792459
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 63.9 bits (32), Expect = 7e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 509 taacagggttaaaatgtcctgtgagaaatagc 540 |||||||||||||||||||||||||||||||| Sbjct: 39196 taacagggttaaaatgtcctgtgagaaatagc 39165 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 608 aacaggcacctagcaatgtacactgccgtgtgcct 642 ||||||||||||||||| |||||| | |||||||| Sbjct: 39099 aacaggcacctagcaatatacactactgtgtgcct 39065
>dbj|AK072124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124F19, full insert sequence Length = 2325 Score = 63.9 bits (32), Expect = 7e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 509 taacagggttaaaatgtcctgtgagaaatagc 540 |||||||||||||||||||||||||||||||| Sbjct: 1987 taacagggttaaaatgtcctgtgagaaatagc 1956 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 608 aacaggcacctagcaatgtacactgccgtgtgcct 642 ||||||||||||||||| |||||| | |||||||| Sbjct: 1890 aacaggcacctagcaatatacactactgtgtgcct 1856
>dbj|AK066504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073G20, full insert sequence Length = 2433 Score = 63.9 bits (32), Expect = 7e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 509 taacagggttaaaatgtcctgtgagaaatagc 540 |||||||||||||||||||||||||||||||| Sbjct: 2090 taacagggttaaaatgtcctgtgagaaatagc 2059 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 608 aacaggcacctagcaatgtacactgccgtgtgcct 642 ||||||||||||||||| |||||| | |||||||| Sbjct: 1993 aacaggcacctagcaatatacactactgtgtgcct 1959
>gb|AC113085.6| Mus musculus chromosome 8, clone RP23-292P21, complete sequence Length = 211723 Score = 48.1 bits (24), Expect = 0.040 Identities = 24/24 (100%) Strand = Plus / Plus Query: 331 cacactcatatccagttcatctct 354 |||||||||||||||||||||||| Sbjct: 98814 cacactcatatccagttcatctct 98837
>ref|XM_479609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3465 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 540 ctgacgacaccaccaacaaagga 562 ||||||||||||||||||||||| Sbjct: 3296 ctgacgacaccaccaacaaagga 3274
>gb|BT018551.1| Zea mays clone EL01N0438H11.d mRNA sequence Length = 1188 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 510 aacagggttaaaatgtcctgtgagaaa 536 |||||||||||||||||||||| |||| Sbjct: 814 aacagggttaaaatgtcctgtgtgaaa 788
>gb|AC109482.3| Homo sapiens chromosome 5 clone RP11-492A10, complete sequence Length = 101941 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 81 aacaaaatacattgtcaacttgg 103 ||||||||||||||||||||||| Sbjct: 62797 aacaaaatacattgtcaacttgg 62819
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 540 ctgacgacaccaccaacaaagga 562 ||||||||||||||||||||||| Sbjct: 29299664 ctgacgacaccaccaacaaagga 29299686
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 540 ctgacgacaccaccaacaaagga 562 ||||||||||||||||||||||| Sbjct: 88353 ctgacgacaccaccaacaaagga 88375
>dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069F21, full insert sequence Length = 3465 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 540 ctgacgacaccaccaacaaagga 562 ||||||||||||||||||||||| Sbjct: 3296 ctgacgacaccaccaacaaagga 3274
>dbj|AK062111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B09, full insert sequence Length = 499 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 540 ctgacgacaccaccaacaaagga 562 ||||||||||||||||||||||| Sbjct: 318 ctgacgacaccaccaacaaagga 296
>gb|AY108539.1| Zea mays PCO101054 mRNA sequence Length = 1061 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 510 aacagggttaaaatgtcctgtgagaaa 536 |||||||||||||||||||||| |||| Sbjct: 910 aacagggttaaaatgtcctgtgtgaaa 884
>gb|AF043694.1| Caenorhabditis elegans cosmid C45E1, complete sequence Length = 27111 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 aaatacattgtcaacttggaa 105 ||||||||||||||||||||| Sbjct: 16788 aaatacattgtcaacttggaa 16808
>emb|AL110471.1|CET06D10 Caenorhabditis elegans Cosmid T06D10, complete sequence Length = 21565 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 aaatacattgtcaacttggaa 105 ||||||||||||||||||||| Sbjct: 17715 aaatacattgtcaacttggaa 17735
>gb|AF022967.1| Caenorhabditis elegans cosmid C13A2, complete sequence Length = 35348 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aaatacattgtcaacttggaa 105 ||||||||||||||||||||| Sbjct: 4753 aaatacattgtcaacttggaa 4733
>emb|AL132952.1|CEY51H4A Caenorhabditis elegans YAC Y51H4A, complete sequence Length = 269619 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aaatacattgtcaacttggaa 105 ||||||||||||||||||||| Sbjct: 62227 aaatacattgtcaacttggaa 62207
>ref|NM_197919.1| Oryza sativa (japonica cultivar-group) putative ADP-ribosylation factor (OSJNBa0056G17.9), mRNA Length = 927 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccagttcacggccaatagctacaa 246 |||||||||| ||||||||||||| Sbjct: 695 ccagttcacgaccaatagctacaa 672
>emb|Z99105.2|BSUB0002 Bacillus subtilis complete genome (section 2 of 21): from 213031 to 415798 Length = 202768 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ctgtttattcaacaaaatacattg 94 ||||||||||| |||||||||||| Sbjct: 136361 ctgtttattcaccaaaatacattg 136384
>emb|AL592495.1| Zebrafish DNA sequence from clone BUSM1-129I22 in linkage group 22 Contains a novel gene similar to human and rodent IER5 (immediately early response 5), the scl gene for stem-cell leukemia hematopoietic transcription factor [tal-1 / T-cell acute lymphocytic leukemia 1 (TAL1); T-cell acute lymphocytic leukemia 1 (Tal1)], a novel gene, a novel gene for a protein similar to human PDZ domain proteins, ESTs, STSs, GSSs and two CpG islands.ESTs, STSs, GSSs and two CpG islands, complete sequence Length = 84543 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tagcagaagataagctctgt 74 |||||||||||||||||||| Sbjct: 40483 tagcagaagataagctctgt 40502
>emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, complete sequence Length = 85135 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 680 actaatgtcagcagaacaac 699 |||||||||||||||||||| Sbjct: 60421 actaatgtcagcagaacaac 60402
>gb|AC087378.6| Homo sapiens chromosome 11, clone RP11-375L11, complete sequence Length = 166379 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gcacaatgcagctcactgca 321 |||||||||||||||||||| Sbjct: 136322 gcacaatgcagctcactgca 136341
>gb|AC103870.3| Homo sapiens chromosome 11, clone RP11-702L21, complete sequence Length = 182598 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcacaatgcagctcactgca 321 |||||||||||||||||||| Sbjct: 138111 gcacaatgcagctcactgca 138092
>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3, complete sequence Length = 228572 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaatacattgtcaacttgg 103 |||||||||||||||||||| Sbjct: 19274 aaaatacattgtcaacttgg 19255
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccagttcacggccaatagctacaa 246 |||||||||| ||||||||||||| Sbjct: 82699 ccagttcacgaccaatagctacaa 82676
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccagttcacggccaatagctacaa 246 |||||||||| ||||||||||||| Sbjct: 22628030 ccagttcacgaccaatagctacaa 22628007
>emb|BX649552.3| Zebrafish DNA sequence from clone CH211-91I13 in linkage group 18, complete sequence Length = 163544 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ctgcacattattgacacact 336 |||||||||||||||||||| Sbjct: 136156 ctgcacattattgacacact 136137
>gb|AC093735.2| Homo sapiens BAC clone RP11-17E2 from 4, complete sequence Length = 111389 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tttattcaacaaaatacatt 93 |||||||||||||||||||| Sbjct: 86253 tttattcaacaaaatacatt 86272
>gb|AC127496.5| Homo sapiens chromosome 17, clone CTD-2561B21, complete sequence Length = 166274 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tatgcatagcacaatgcagc 313 |||||||||||||||||||| Sbjct: 135421 tatgcatagcacaatgcagc 135402
>dbj|AK070151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044N16, full insert sequence Length = 1016 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccagttcacggccaatagctacaa 246 |||||||||| ||||||||||||| Sbjct: 797 ccagttcacgaccaatagctacaa 774
>dbj|AK068771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162J02, full insert sequence Length = 1032 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccagttcacggccaatagctacaa 246 |||||||||| ||||||||||||| Sbjct: 845 ccagttcacgaccaatagctacaa 822
>emb|BX649294.7| Zebrafish DNA sequence from clone CH211-223C9 in linkage group 22, complete sequence Length = 209223 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ctgcacattattgacacact 336 |||||||||||||||||||| Sbjct: 197651 ctgcacattattgacacact 197632
>emb|BX664601.6| Zebrafish DNA sequence from clone CH211-135J1 in linkage group 22, complete sequence Length = 76145 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tagcagaagataagctctgt 74 |||||||||||||||||||| Sbjct: 71924 tagcagaagataagctctgt 71943
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccagttcacggccaatagctacaa 246 |||||||||| ||||||||||||| Sbjct: 22640498 ccagttcacgaccaatagctacaa 22640475
>dbj|AP001330.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1410C5 Length = 163255 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aggcagcaaataatagttca 24 |||||||||||||||||||| Sbjct: 143952 aggcagcaaataatagttca 143971
>dbj|D50453.1| Bacillus subtilis DNA for 25-36 degree region containing the amyE-srfA region, complete cds Length = 146191 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ctgtttattcaacaaaatacattg 94 ||||||||||| |||||||||||| Sbjct: 29054 ctgtttattcaccaaaatacattg 29077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,923,095 Number of Sequences: 3902068 Number of extensions: 5923095 Number of successful extensions: 100504 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100346 Number of HSP's gapped (non-prelim): 158 length of query: 709 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 686 effective length of database: 17,143,297,704 effective search space: 11760302224944 effective search space used: 11760302224944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)