ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags34m12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A06, full insert sequence Length = 3391 Score = 184 bits (93), Expect = 3e-43 Identities = 235/281 (83%), Gaps = 1/281 (0%) Strand = Plus / Minus Query: 434 ggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaacttcctca 493 |||||||||||||||| ||||||||| ||||||| || |||| | || || || |||| Sbjct: 3072 ggattcgatagccatgtccaggtaaaaaccactcgaagtctaacttcaacaattttctca 3013 Query: 494 tgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattcagttcgt 553 |||| ||||||||||| |||||| |||| |||||||||| ||||||||| | || | Sbjct: 3012 tgctgtccagttgcaagctcactggttgcctgctgtacataagaaagagatataaatcat 2953 Query: 554 ctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtttgtaca 613 | || | |||||||||||| || || || |||||||| || ||||||| |||||||| | Sbjct: 2952 cagattcttctgattttgcaacgtgatctccagtgaaaagcgcctttactggtttgtaga 2893 Query: 614 acaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcatttccaa 673 ||||||||||||| |||| ||| ||||| ||||||||||||||||| |||||| ||||| Sbjct: 2892 acaagcagaccgaaccttgggtatggccaggggtatggataagttcgaaatcagctccaa 2833 Query: 674 tgttccagggaccactttccagtaagtttccgctcgacatc 714 ||||||| |||||| || ||||||||||||||||| ||||| Sbjct: 2832 tgttccaaggacca-ttgccagtaagtttccgctcaacatc 2793
>ref|XM_468526.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1144 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 959 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 900 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 899 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 840 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 839 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 780 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 779 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 720 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 719 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 660 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 659 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 609
>ref|XM_507554.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1218 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1031 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 972 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 971 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 912 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 911 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 852 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 851 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 792 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 791 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 732 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 731 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 681
>ref|XM_468525.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1031 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 972 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 971 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 912 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 911 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 852 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 851 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 792 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 791 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 732 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 731 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 681
>ref|XM_507553.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1334 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1030 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 971 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 970 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 911 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 910 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 851 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 850 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 791 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 790 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 731 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 730 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 680
>ref|XM_507067.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1381 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1077 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 1018 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 1017 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 958 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 957 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 898 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 897 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 838 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 837 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 778 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 777 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 727
>dbj|AK122029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112F11, full insert sequence Length = 1381 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1077 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 1018 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 1017 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 958 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 957 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 898 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 897 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 838 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 837 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 778 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 777 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 727
>dbj|AK104532.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C07, full insert sequence Length = 1218 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1031 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 972 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 971 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 912 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 911 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 852 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 851 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 792 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 791 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 732 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 731 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 681
>dbj|AK104364.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C11, full insert sequence Length = 1218 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1031 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 972 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 971 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 912 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 911 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 852 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 851 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 792 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 791 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 732 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 731 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 681
>dbj|AK065244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I14, full insert sequence Length = 1142 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 957 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 898 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 897 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 838 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 837 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 778 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 777 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 718 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 717 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 658 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 657 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 607
>dbj|AK064830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F10, full insert sequence Length = 1335 Score = 182 bits (92), Expect = 1e-42 Identities = 288/352 (81%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 1030 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 971 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| |||||||||||||||| ||||||||| ||||||| || |||| | || || | Sbjct: 970 tataatggattcgatagccatgaccaggtaaaaaccactcgaagtctaacttcaacaatt 911 Query: 488 tcctcatgctatccagttgcaaattcactgattgcttgctgtacatccgaaagagattca 547 | |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| | Sbjct: 910 ttctcatgctgtccagctgcaagcccactgattgcttgctgtacataagaaagagatcta 851 Query: 548 gttcgtctgaatattctgattttgcgacatggtcgccagtgaatagtgcctttagcggtt 607 || || || | |||||||||||| ||||| || |||||||| || ||||||| |||| Sbjct: 850 aatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggtt 791 Query: 608 tgtacaacaagcagaccgatccttcggtgtggcctggggtatggataagttcaaaatcat 667 |||| || |||||||| || ||||| || || |||||||||||||||||||| |||||| Sbjct: 790 tgtagaataagcagactgaaccttcagtatgacctggggtatggataagttcgaaatcag 731 Query: 668 ttccaatgttccagggaccactttccagtaagtttccgctcgacatcagcag 719 |||||||| ||| || ||| |||||||||||||||| ||| ||||| |||| Sbjct: 730 ctccaatgtcccatgggcca-tttccagtaagtttccactcaacatctgcag 680
>gb|AY137517.1| Hordeum vulgare subsp. vulgare hypersensitive-induced reaction protein 3 (hir3) gene, complete cds Length = 6537 Score = 121 bits (61), Expect = 3e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 43 ctccgatccaaaataagtaccatggttttagttcaaatttgaactaaaaccatgacactt 102 |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| Sbjct: 5829 ctccgatccaaaataagtgtcgtggttttagtacaaatttgaactaaaaccatgacactt 5888 Query: 103 attttggatccgagggagtac 123 |||||||||| |||||||||| Sbjct: 5889 attttggatcggagggagtac 5909 Score = 113 bits (57), Expect = 8e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 43 ctccgatccaaaataagtaccatggttttagttcaaatttgaactaaaaccatgacactt 102 |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| Sbjct: 5902 ctccgatccaaaataagtgtcatggttttagttcaaatttgtactaaaaccacgacactt 5843 Query: 103 attttggatccgaggga 119 |||||||||| |||||| Sbjct: 5842 attttggatcggaggga 5826
>gb|AY112293.1| Zea mays CL19799_1 mRNA sequence Length = 644 Score = 109 bits (55), Expect = 1e-20 Identities = 133/159 (83%) Strand = Plus / Plus Query: 529 tacatccgaaagagattcagttcgtctgaatattctgattttgcgacatggtcgccagtg 588 |||||| ||||||| ||||| |||||||| | |||||| ||||| |||||||| |||||| Sbjct: 341 tacatcagaaagaggttcagatcgtctgattcttctgactttgcaacatggtctccagtg 400 Query: 589 aatagtgcctttagcggtttgtacaacaagcagaccgatccttcggtgtggcctggggta 648 || || |||||||||||||| | ||||||| || || ||| ||| |||||||| ||| Sbjct: 401 aacagcacctttagcggtttgaagtacaagcacactgagcctggggtatggcctggcgta 460 Query: 649 tggataagttcaaaatcatttccaatgttccagggacca 687 ||||||||||||||||| |||| | |||||| |||||| Sbjct: 461 tggataagttcaaaatctgttcctaagttccatggacca 499 Score = 71.9 bits (36), Expect = 3e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||| ||||||||||| ||||| || ||| |||| |||||| | || |||| Sbjct: 180 cctagcttgtgtaattagctaggagggactccatggctacattcttggcacgcacatctt 239 Query: 428 cataccggattcgatagccatgcccaggtaaataccactcaaaatctaggtccattaact 487 ||| ||||||||||||||| ||||||||| |||||| || ||||| |||| || || Sbjct: 240 tgtacttgattcgatagccatgtccaggtaaaagccactcgaactctagctccagtagct 299 Query: 488 tcctcatgctatccag 503 |||| ||||| ||||| Sbjct: 300 tcctgatgctttccag 315
>gb|AY821714.1| Peridictyon sanctum beta amylase gene, partial cds; and Stowaway MITE, complete sequence Length = 1475 Score = 103 bits (52), Expect = 8e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 43 ctccgatccaaaataagtaccatggttttagttcaaatttgaactaaaaccatgacactt 102 ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| Sbjct: 1204 ctccgatccaaaataagcgtcgtggttttagttcaaatttgaactaaaaccatgacgctt 1263 Query: 103 attttggatccgagggagta 122 ||||| |||| ||||||||| Sbjct: 1264 attttagatcggagggagta 1283 Score = 103 bits (52), Expect = 8e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 43 ctccgatccaaaataagtaccatggttttagttcaaatttgaactaaaaccatgacactt 102 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||| Sbjct: 1277 ctccgatctaaaataagcgtcatggttttagttcaaatttgaactaaaaccacgacgctt 1218 Query: 103 attttggatccgagggagta 122 |||||||||| ||||||||| Sbjct: 1217 attttggatcggagggagta 1198
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 8e-13 Identities = 70/78 (89%), Gaps = 1/78 (1%) Strand = Plus / Plus Query: 637 tggcctggggtatggataagttcaaaatcatttccaatgttccagggaccactttccagt 696 ||||| ||||||||||||||||| |||||| |||||||||||| |||||| || ||||| Sbjct: 35684392 tggccaggggtatggataagttcgaaatcagctccaatgttccaaggacca-ttgccagt 35684450 Query: 697 aagtttccgctcgacatc 714 |||||||||||| ||||| Sbjct: 35684451 aagtttccgctcaacatc 35684468 Score = 71.9 bits (36), Expect = 3e-09 Identities = 70/80 (87%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 640 cctggggtatggataagttcaaaatcatttccaatgttccagggaccactttccagtaag 699 |||||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| Sbjct: 35680281 cctggggtatggataagttcgaaatcagctccaatgtcccatgggcca-tttccagtaag 35680339 Query: 700 tttccgctcgacatcagcag 719 ||||| ||| ||||| |||| Sbjct: 35680340 tttccactcaacatctgcag 35680359 Score = 65.9 bits (33), Expect = 2e-07 Identities = 90/109 (82%) Strand = Plus / Plus Query: 515 ctgattgcttgctgtacatccgaaagagattcagttcgtctgaatattctgattttgcga 574 ||||||||||||||||||| ||||||||| | || || || | |||||||||||| | Sbjct: 35679824 ctgattgcttgctgtacataagaaagagatctaaatcatcagattcttctgattttgcaa 35679883 Query: 575 catggtcgccagtgaatagtgcctttagcggtttgtacaacaagcagac 623 |||| || |||||||| || ||||||| |||||||| || |||||||| Sbjct: 35679884 catgatctccagtgaaaagcgcctttactggtttgtagaataagcagac 35679932 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 561 ttctgattttgcgacatggtcgccagtgaatagtgcctttagcggtttgtacaacaagca 620 |||||||||||| || || || |||||||| || ||||||| |||||||| |||||||| Sbjct: 35684114 ttctgattttgcaacgtgatctccagtgaaaagcgcctttactggtttgtagaacaagca 35684173 Query: 621 gaccga 626 |||||| Sbjct: 35684174 gaccga 35684179 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 35679455 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 35679514 Query: 428 cataccggattcgatagccatg 449 ||| |||||||||||||||| Sbjct: 35679515 tataatggattcgatagccatg 35679536
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 83.8 bits (42), Expect = 8e-13 Identities = 70/78 (89%), Gaps = 1/78 (1%) Strand = Plus / Plus Query: 637 tggcctggggtatggataagttcaaaatcatttccaatgttccagggaccactttccagt 696 ||||| ||||||||||||||||| |||||| |||||||||||| |||||| || ||||| Sbjct: 45006 tggccaggggtatggataagttcgaaatcagctccaatgttccaaggacca-ttgccagt 45064 Query: 697 aagtttccgctcgacatc 714 |||||||||||| ||||| Sbjct: 45065 aagtttccgctcaacatc 45082 Score = 71.9 bits (36), Expect = 3e-09 Identities = 70/80 (87%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 640 cctggggtatggataagttcaaaatcatttccaatgttccagggaccactttccagtaag 699 |||||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| Sbjct: 40895 cctggggtatggataagttcgaaatcagctccaatgtcccatgggcca-tttccagtaag 40953 Query: 700 tttccgctcgacatcagcag 719 ||||| ||| ||||| |||| Sbjct: 40954 tttccactcaacatctgcag 40973 Score = 65.9 bits (33), Expect = 2e-07 Identities = 90/109 (82%) Strand = Plus / Plus Query: 515 ctgattgcttgctgtacatccgaaagagattcagttcgtctgaatattctgattttgcga 574 ||||||||||||||||||| ||||||||| | || || || | |||||||||||| | Sbjct: 40438 ctgattgcttgctgtacataagaaagagatctaaatcatcagattcttctgattttgcaa 40497 Query: 575 catggtcgccagtgaatagtgcctttagcggtttgtacaacaagcagac 623 |||| || |||||||| || ||||||| |||||||| || |||||||| Sbjct: 40498 catgatctccagtgaaaagcgcctttactggtttgtagaataagcagac 40546 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 561 ttctgattttgcgacatggtcgccagtgaatagtgcctttagcggtttgtacaacaagca 620 |||||||||||| || || || |||||||| || ||||||| |||||||| |||||||| Sbjct: 44728 ttctgattttgcaacgtgatctccagtgaaaagcgcctttactggtttgtagaacaagca 44787 Query: 621 gaccga 626 |||||| Sbjct: 44788 gaccga 44793 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 368 cctagtttttgtagttagctaggagagactcaatagctgcatttttggcatgtacgtctt 427 ||||| || |||||||||||| ||| ||||| || |||| || || ||| ||||||||| Sbjct: 40069 cctagcttgtgtagttagctatgagggactcgattgctgaatccttagcacgtacgtctt 40128 Query: 428 cataccggattcgatagccatg 449 ||| |||||||||||||||| Sbjct: 40129 tataatggattcgatagccatg 40150
>emb|CR626933.1| Triticum turgidum Length = 25216 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 66 ggttttagttcaaatttgaactaaaaccatgacacttattttgg 109 ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 11862 ggttttagttcaaatttgaactaaaaccaagacacttattttgg 11819 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 50 ccaaaataagtaccatggttttagttcaaatttgaactaaaacc 93 ||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 11819 ccaaaataagtgtcttggttttagttcaaatttgaactaaaacc 11862
>emb|CR626929.1| Triticum aestivum Length = 20745 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 66 ggttttagttcaaatttgaactaaaaccatgacacttattttgg 109 ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 14580 ggttttagttcaaatttgaactaaaaccaagacacttattttgg 14537 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 50 ccaaaataagtaccatggttttagttcaaatttgaactaaaacc 93 ||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 14537 ccaaaataagtgtcttggttttagttcaaatttgaactaaaacc 14580
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 79 atttgaactaaaaccatgacacttattttggatccgag 116 ||||||||||||||||||||| |||| ||||||||||| Sbjct: 59686 atttgaactaaaaccatgacaattatgttggatccgag 59723 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 79 atttgaactaaaaccatgacacttattttggat 111 |||| |||||||| ||||||| ||||||||||| Sbjct: 59678 atttaaactaaaatcatgacatttattttggat 59646
>emb|AJ234533.1|HVU234533 Hordeum vulgare genomic DNA fragment; clone MWG0604 Length = 1028 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 78 aatttgaactaaaaccatgacacttattttggatccgagggagtacattata 129 ||||||||||||||||||| ||| ||||| || | |||||||||||||||| Sbjct: 111 aatttgaactaaaaccatgccacgtatttccgaacggagggagtacattata 60
>gb|AY821690.1| Aegilops comosa clone 1a beta amylase gene, partial cds; and Stowaway MITE, complete sequence Length = 1529 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 80 tttgaactaaaaccatgacacttattttggatccgagggagta 122 |||||| |||||||| ||| ||||||||||||| ||||||||| Sbjct: 1265 tttgaagtaaaaccacgacgcttattttggatcggagggagta 1223
>gb|AY821691.1| Aegilops uniaristata beta amylase gene, partial cds; and transposon Stowaway MITE, complete sequence Length = 1463 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Minus Query: 85 actaaaaccatgacacttattttggatccgagggagta 122 |||||||||| ||| ||||||||||||| ||||||||| Sbjct: 1249 actaaaaccacgacgcttattttggatcggagggagta 1212
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 50.1 bits (25), Expect = 0.011 Identities = 40/45 (88%) Strand = Plus / Plus Query: 64 atggttttagttcaaatttgaactaaaaccatgacacttattttg 108 |||||||||| |||||| || ||||||| ||||||||||||||| Sbjct: 36166 atggttttagatcaaatctggactaaaattatgacacttattttg 36210
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 50.1 bits (25), Expect = 0.011 Identities = 49/56 (87%), Gaps = 2/56 (3%) Strand = Plus / Plus Query: 67 gttttagttcaaatttgaactaaaaccatgacacttattttggatccgagggagta 122 ||||||||||||| |||||||||||| |||| ||||||| |||| ||||||||| Sbjct: 4469 gttttagttcaaac--gaactaaaaccacgacatttattttcgatcggagggagta 4522
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 48.1 bits (24), Expect = 0.042 Identities = 33/36 (91%) Strand = Plus / Minus Query: 87 taaaaccatgacacttattttggatccgagggagta 122 ||||||||||| |||||||||||||| | ||||||| Sbjct: 32315 taaaaccatgaaacttattttggatcggtgggagta 32280
>ref|NM_119509.3| Arabidopsis thaliana catalytic AT4G33540 mRNA, complete cds Length = 1359 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 574 acatggtcgccagtgaatagtgcctt 599 ||||||||||||||||||| |||||| Sbjct: 842 acatggtcgccagtgaataatgcctt 817
>emb|X77921.1|EAAMASL E.amylovara (Ea7/74) ams- A, B, C, D, E, F, G, H, I, J, K and L genes Length = 17013 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 505 tgcaaattcactgattgcttgc 526 |||||||||||||||||||||| Sbjct: 8590 tgcaaattcactgattgcttgc 8611
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79 Length = 199536 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 574 acatggtcgccagtgaatagtgcctt 599 ||||||||||||||||||| |||||| Sbjct: 161350 acatggtcgccagtgaataatgcctt 161325
>emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project) Length = 98124 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 574 acatggtcgccagtgaatagtgcctt 599 ||||||||||||||||||| |||||| Sbjct: 14032 acatggtcgccagtgaataatgcctt 14007
>gb|AY093148.1| Arabidopsis thaliana putative protein (At4g33540) mRNA, complete cds Length = 1265 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 574 acatggtcgccagtgaatagtgcctt 599 ||||||||||||||||||| |||||| Sbjct: 842 acatggtcgccagtgaataatgcctt 817
>dbj|AK054078.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230016N01 product:unclassifiable, full insert sequence Length = 2950 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 tggaatccttatttgggaagta 349 |||||||||||||||||||||| Sbjct: 2154 tggaatccttatttgggaagta 2133
>emb|BX827444.1|CNS0A2SJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1272 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 574 acatggtcgccagtgaatagtgcctt 599 ||||||||||||||||||| |||||| Sbjct: 874 acatggtcgccagtgaataatgcctt 849
>gb|BT003391.1| Arabidopsis thaliana putative protein (At4g33540) mRNA, complete cds Length = 1141 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 574 acatggtcgccagtgaatagtgcctt 599 ||||||||||||||||||| |||||| Sbjct: 833 acatggtcgccagtgaataatgcctt 808
>gb|BC082552.1| Mus musculus RIKEN cDNA A230063L24 gene, mRNA (cDNA clone IMAGE:30621913) Length = 7683 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 tggaatccttatttgggaagta 349 |||||||||||||||||||||| Sbjct: 6957 tggaatccttatttgggaagta 6936
>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04, complete sequence Length = 107631 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 tttagttcaaatttgaactaaa 90 |||||||||||||||||||||| Sbjct: 86518 tttagttcaaatttgaactaaa 86539 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tttagttcaaatttgaactaaa 90 |||||||||||||||||||||| Sbjct: 86539 tttagttcaaatttgaactaaa 86518
>gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24, from chromosome 8, complete sequence Length = 136932 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 tttagttcaaatttgaactaaa 90 |||||||||||||||||||||| Sbjct: 3301 tttagttcaaatttgaactaaa 3322 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tttagttcaaatttgaactaaa 90 |||||||||||||||||||||| Sbjct: 3322 tttagttcaaatttgaactaaa 3301
>gb|AC171917.14| Mus musculus chromosome 8, clone RP23-390K13, complete sequence Length = 217234 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 tggaatccttatttgggaagta 349 |||||||||||||||||||||| Sbjct: 68992 tggaatccttatttgggaagta 68971
>gb|M63224.1|WHTGERMINA Wheat germin 9f-3.8 gene, complete cds Length = 3761 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tggttttagttcaaatttgaac 86 |||||||||||||||||||||| Sbjct: 2399 tggttttagttcaaatttgaac 2378 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 gttcaaatttgaactaaaacca 94 |||||||||||||||||||||| Sbjct: 2378 gttcaaatttgaactaaaacca 2399
>gb|AF166527.1|AF166527 Zea mays flowering-time protein isoforms alpha and beta (ZmLD) gene, alternatively spliced products, complete cds Length = 10304 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 ttatattttcttttgcaggat 145 ||||||||||||||||||||| Sbjct: 4255 ttatattttcttttgcaggat 4275
>gb|L34210.1|BLYCHI26A Hordeum vulgare chitinase (CHI26) gene, complete cds Length = 3169 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tggttttagttcaaatttgaa 85 ||||||||||||||||||||| Sbjct: 2778 tggttttagttcaaatttgaa 2758 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttcaaatttgaactaaaacca 94 ||||||||||||||||||||| Sbjct: 2758 ttcaaatttgaactaaaacca 2778 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,808,809 Number of Sequences: 3902068 Number of extensions: 6808809 Number of successful extensions: 131251 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131125 Number of HSP's gapped (non-prelim): 100 length of query: 739 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 716 effective length of database: 17,143,297,704 effective search space: 12274601156064 effective search space used: 12274601156064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
