ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWF17_SCHPO (O94620) Cell cycle control protein cwf17 33 0.17
2SYFB_HALSA (Q9HMK3) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 1.1
3SLAP2_THET8 (P35830) S-layer protein precursor (P100 protein) (S... 28 7.2

>CWF17_SCHPO (O94620) Cell cycle control protein cwf17|
          Length = 340

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 148 YILAGSRGLDLHSYYHSHEDACLACSSDYT 237
           Y+L G  G   H  +H H+D  L+CSSD T
Sbjct: 304 YVLPGHEGSVNHVDFHPHQDIILSCSSDRT 333



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>SYFB_HALSA (Q9HMK3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 567

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 212 ALHAPPTIHPSFVDLRSAS 268
           AL  PPT HPSF+D R+A+
Sbjct: 510 ALETPPTTHPSFIDGRAAT 528



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>SLAP2_THET8 (P35830) S-layer protein precursor (P100 protein) (Surface layer|
           protein)
          Length = 917

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 118 TNSSKAIYNAYILA-GSRGLDLHSYYHSHEDACLACSSDYTS 240
           T    A+Y +Y LA G   L     YH+ + A  + SSDYT+
Sbjct: 724 TTQDIAVYGSYELALGPLTLKPMGRYHTQDAAAASTSSDYTT 765


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,146,274
Number of Sequences: 219361
Number of extensions: 959059
Number of successful extensions: 2208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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