ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ201165.1| Hordeum vulgare subsp. vulgare cultivar CI6151 cr... 664 0.0
2gb|DQ201164.1| Hordeum vulgare subsp. vulgare cultivar Morex cry... 656 0.0
3gb|DQ201154.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 620 e-175
4gb|DQ201153.1| Hordeum vulgare subsp. vulgare cultivar Morex cry... 620 e-175
5gb|DQ201152.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo c... 620 e-175
6emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
8dbj|AK072182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
9dbj|AB073547.2| Oryza sativa (japonica cultivar-group) OsCRY1b m... 50 0.005
10ref|XM_466372.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
11dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
12gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 4.7
13gb|AC116460.10| Mus musculus chromosome 10, clone RP23-244G12, c... 40 4.7
14gb|AC008669.7| Homo sapiens chromosome 5 clone CTB-36H16, comple... 40 4.7
15gb|AC022116.5|AC022116 Homo sapiens chromosome 5 clone CTC-502J4... 40 4.7
16gb|AC153531.5| Mus musculus 10 BAC RP23-22C3 (Roswell Park Cance... 40 4.7
17emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chro... 40 4.7 
>gb|DQ201165.1| Hordeum vulgare subsp. vulgare cultivar CI6151 cryptochrome 1b mRNA,
            partial cds
          Length = 1736

 Score =  664 bits (335), Expect = 0.0
 Identities = 353/357 (98%), Gaps = 2/357 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    acacaggggcagtttgcagctatatagacatataacacacccctacaaaaaatataagca 60
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 acacagggg-agtttgcagctatatagacatataacacacccctacaaaaaatataagca 1614

                                                                        
Query: 61   tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 1554

                                                                        
Query: 121  aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 1494

                                                                        
Query: 181  catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 1434

                                                                        
Query: 241  cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaattngg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1433 cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaatttgg 1374

                                                                     
Query: 301  cntgcacggagntttccacgtccctgcctgttgtcagtgactgtgatagctgatgcc 357
            | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 c-tgcacggagttttccacgtccctgcctgttgtcagtgactgtgatagctgatgcc 1318
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>gb|DQ201164.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1b mRNA,
            partial cds
          Length = 1150

 Score =  656 bits (331), Expect = 0.0
 Identities = 342/345 (99%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                        
Query: 13   tttgcagctatatagacatataacacacccctacaaaaaatataagcatcccccactagg 72
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 tttgcagctatatagacatataacacacccctacaaaaaatataagcatcccccactagg 1074

                                                                        
Query: 73   aaaccctcaattgtctgatgatcaataatacacatccttttttcgaccaactctagcaaa 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 aaaccctcaattgtctgatgatcaataatacacatccttttttcgaccaactctagcaaa 1014

                                                                        
Query: 133  gctatatataacgcatatatccttgcaggttctagaggattagatttacatagctattat 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gctatatataacgcatatatccttgcaggttctagaggattagatttacatagctattat 954

                                                                        
Query: 193  cactcccacgaagacgcctgccttgcatgctcctccgactatacatcccagtttcgtgga 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  cactcccacgaagacgcctgccttgcatgctcctccgactatacatcccagtttcgtgga 894

                                                                        
Query: 253  tctccgctctgcgtccggaaaacttgttttctaaccgatgtaattnggcntgcacggagn 312
            ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| 
Sbjct: 893  tctccgctctgcgtccggaaaacttgttttctaaccgatgtaatttggc-tgcacggagt 835

                                                         
Query: 313  tttccacgtccctgcctgttgtcagtgactgtgatagctgatgcc 357
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  tttccacgtccctgcctgttgtcagtgactgtgatagctgatgcc 790
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>gb|DQ201154.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
            1b (Cry1b) gene, complete cds
          Length = 4753

 Score =  620 bits (313), Expect = e-175
 Identities = 331/335 (98%), Gaps = 2/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    acacaggggcagtttgcagctatatagacatataacacacccctacaaaaaatataagca 60
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 acacagggg-agtttgcagctatatagacatataacacacccctacaaaaaatataagca 4593

                                                                        
Query: 61   tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 4533

                                                                        
Query: 121  aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4532 aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 4473

                                                                        
Query: 181  catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4472 catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 4413

                                                                        
Query: 241  cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaattngg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4412 cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaatttgg 4353

                                               
Query: 301  cntgcacggagntttccacgtccctgcctgttgtc 335
            | ||||||||| |||||||||||||||||||||||
Sbjct: 4352 c-tgcacggagttttccacgtccctgcctgttgtc 4319



 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 335  cagtgactgtgatagctgatgcc 357
            |||||||||||||||||||||||
Sbjct: 3384 cagtgactgtgatagctgatgcc 3362
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>gb|DQ201153.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1b (Cry1b)
            gene, complete cds
          Length = 4753

 Score =  620 bits (313), Expect = e-175
 Identities = 331/335 (98%), Gaps = 2/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    acacaggggcagtttgcagctatatagacatataacacacccctacaaaaaatataagca 60
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 acacagggg-agtttgcagctatatagacatataacacacccctacaaaaaatataagca 4593

                                                                        
Query: 61   tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 4533

                                                                        
Query: 121  aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4532 aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 4473

                                                                        
Query: 181  catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4472 catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 4413

                                                                        
Query: 241  cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaattngg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4412 cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaatttgg 4353

                                               
Query: 301  cntgcacggagntttccacgtccctgcctgttgtc 335
            | ||||||||| |||||||||||||||||||||||
Sbjct: 4352 c-tgcacggagttttccacgtccctgcctgttgtc 4319



 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 335  cagtgactgtgatagctgatgcc 357
            |||||||||||||||||||||||
Sbjct: 3384 cagtgactgtgatagctgatgcc 3362
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>gb|DQ201152.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1b
            (Cry1b) gene, complete cds
          Length = 4753

 Score =  620 bits (313), Expect = e-175
 Identities = 331/335 (98%), Gaps = 2/335 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    acacaggggcagtttgcagctatatagacatataacacacccctacaaaaaatataagca 60
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 acacagggg-agtttgcagctatatagacatataacacacccctacaaaaaatataagca 4593

                                                                        
Query: 61   tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 tcccccactaggaaaccctcaattgtctgatgatcaataatacacatccttttttcgacc 4533

                                                                        
Query: 121  aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4532 aactctagcaaagctatatataacgcatatatccttgcaggttctagaggattagattta 4473

                                                                        
Query: 181  catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4472 catagctattatcactcccacgaagacgcctgccttgcatgctcctccgactatacatcc 4413

                                                                        
Query: 241  cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaattngg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4412 cagtttcgtggatctccgctctgcgtccggaaaacttgttttctaaccgatgtaatttgg 4353

                                               
Query: 301  cntgcacggagntttccacgtccctgcctgttgtc 335
            | ||||||||| |||||||||||||||||||||||
Sbjct: 4352 c-tgcacggagttttccacgtccctgcctgttgtc 4319



 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 335  cagtgactgtgatagctgatgcc 357
            |||||||||||||||||||||||
Sbjct: 3384 cagtgactgtgatagctgatgcc 3362
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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
              complete sequence
          Length = 175698

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                          
Query: 159    aggttctagaggattagatttacatagctattatcactcccacgaagacgcctgccttgc 218
              |||||||| ||||||||||||||| | ||||| |||| | || |||   ||||| |||||
Sbjct: 133269 aggttctacaggattagatttacacaactattgtcacactcaggaaattgcctggcttgc 133210

                               
Query: 219    atgctcctccgactata 235
              |||||| || |||||||
Sbjct: 133209 atgctcatcagactata 133193
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 159      aggttctagaggattagatttacatagctattatcactcccacgaagacgcctgccttgc 218
                |||||||| ||||||||||||||| | ||||| |||| | || |||   ||||| |||||
Sbjct: 22529514 aggttctacaggattagatttacacaactattgtcacactcaggaaattgcctggcttgc 22529455

                                 
Query: 219      atgctcctccgactata 235
                |||||| || |||||||
Sbjct: 22529454 atgctcatcagactata 22529438
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>dbj|AK072182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D14, full
            insert sequence
          Length = 4629

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  aggttctagaggattagatttacatagctattatcactcccacgaagacgcctgccttgc 218
            |||||||| ||||||||||||||| | ||||| |||| | || |||   ||||| |||||
Sbjct: 4454 aggttctacaggattagatttacacaactattgtcacactcaggaaattgcctggcttgc 4395

                             
Query: 219  atgctcctccgactata 235
            |||||| || |||||||
Sbjct: 4394 atgctcatcagactata 4378
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>dbj|AB073547.2| Oryza sativa (japonica cultivar-group) OsCRY1b mRNA for cryptochrome
            1b, complete cds
          Length = 2904

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  aggttctagaggattagatttacatagctattatcactcccacgaagacgcctgccttgc 218
            |||||||| ||||||||||||||| | ||||| |||| | || |||   ||||| |||||
Sbjct: 2714 aggttctacaggattagatttacacaactattgtcacactcaggaaattgcctggcttgc 2655

                             
Query: 219  atgctcctccgactata 235
            |||||| || |||||||
Sbjct: 2654 atgctcatcagactata 2638
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>ref|XM_466372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2832

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 313  tttccacgtccctgcctgttgtcagtgactgtgatagctga 353
            ||||||| |||| ||||||||||| |||||| || ||||||
Sbjct: 2540 tttccacttcccagcctgttgtcaatgactgcgagagctga 2500
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>dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M07, full
            insert sequence
          Length = 2833

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 313  tttccacgtccctgcctgttgtcagtgactgtgatagctga 353
            ||||||| |||| ||||||||||| |||||| || ||||||
Sbjct: 2541 tttccacttcccagcctgttgtcaatgactgcgagagctga 2501
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 319     cgtccctgcctgttgtcagtgact 342
               |||||||||||||||| |||||||
Sbjct: 2058733 cgtccctgcctgttgtgagtgact 2058756
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>gb|AC116460.10| Mus musculus chromosome 10, clone RP23-244G12, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    attgtctgatgatcaataat 101
             ||||||||||||||||||||
Sbjct: 66872 attgtctgatgatcaataat 66853
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>gb|AC008669.7| Homo sapiens chromosome 5 clone CTB-36H16, complete sequence
          Length = 189156

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaaccctcaattgtctgatg 92
              ||||||||||||||||||||
Sbjct: 151216 aaaccctcaattgtctgatg 151197
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>gb|AC022116.5|AC022116 Homo sapiens chromosome 5 clone CTC-502J4, complete sequence
          Length = 171829

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    aaaccctcaattgtctgatg 92
             ||||||||||||||||||||
Sbjct: 83088 aaaccctcaattgtctgatg 83069
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>gb|AC153531.5| Mus musculus 10 BAC RP23-22C3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 186219

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     attgtctgatgatcaataat 101
              ||||||||||||||||||||
Sbjct: 145187 attgtctgatgatcaataat 145168
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>emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chromosome 2, complete
             sequence
          Length = 191638

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   cctgttgtcagtgactgtga 346
             ||||||||||||||||||||
Sbjct: 19498 cctgttgtcagtgactgtga 19517


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,740,247
Number of Sequences: 3902068
Number of extensions: 2740247
Number of successful extensions: 49138
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49085
Number of HSP's gapped (non-prelim): 44
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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