>O1082_RAT (P23268) Olfactory receptor 1082 (Olfactory receptor-like protein|
           F12)
          Length = 317

 Score = 38.1 bits (87), Expect = 0.029
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = -1

Query: 441 YLDYWSALCFGIVAGEYIVYYLLLFLWKFSLYERFVASLLNMLPSVQYSGERSV*AFIVG 262
           Y+     LC+ ++    +   LLL  W  S++  F+ SL+ +   + + G+  +  F   
Sbjct: 124 YVAXCHPLCYTVIVNHRLCILLLLLSWVISIFHAFIQSLIVL--QLTFCGDVKIPHF--- 178

Query: 261 FCWL--VRNLLCGHSWKFHPRKEFMPVFVGFVHVLWVLYCFISI 136
           FC L  +  L C  ++  H     +PV +  +    +LY +  I
Sbjct: 179 FCELNQLSQLTCSDNFPSHLIMNLVPVMLAAISFSGILYSYFKI 222

>SLAP2_CAEEL (Q02328) Protein SLA2 homolog|
          Length = 927

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +1

Query: 193 HELLPWMKFPRMPTKQI--SHQ--PTETDYKCLNRPLTRVLHRWKHIEQAGYKPFIQRKL 360
           H +L W KF  +  K +   H+  P ET Y+ +NR  T++   WKH+  +GY P I+   
Sbjct: 63  HPVLTW-KFCHLVHKLLRDGHRKVPEET-YRYVNR-FTQLSQFWKHLNTSGYGPCIESYC 119

Query: 361 PQKKQKI-IHNVFP 399
                ++  HN +P
Sbjct: 120 KLLHDRVTFHNKYP 133

>RPOB_PELCD (Q3A6Q4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1368

 Score = 26.2 bits (56), Expect(2) = 7.1
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = +1

Query: 319 IEQAGYKPFIQRKLPQKKQK------IIHNVFPSNDTET*GGPVIQICSLWPVACPYNST 480
           I++  YK F+Q  LP   +K      +  +VFP  D         + CSL  V+  Y+  
Sbjct: 30  IQKNSYKRFLQAGLPPSARKNIGLEAVFRSVFPIRDFS-------ETCSLDYVS--YSLG 80

Query: 481 AANFQLAECFDR 516
              + + EC  R
Sbjct: 81  TPKYDVGECHQR 92



 Score = 22.3 bits (46), Expect(2) = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 147 NNIVPTKHGQILQTLA*TPSLDEISKNAHK 236
           NN +  KH   ++ +   P+L +I KN++K
Sbjct: 7   NNQLLRKHFSTIKGIIEIPNLIDIQKNSYK 36

>Y021_NPVAC (P41426) Hypothetical 36.6 kDa protein in EGT-IAP1 intergenic|
           region (ORF 5)
          Length = 319

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 22/98 (22%), Positives = 43/98 (43%)
 Frame = -1

Query: 399 GEYIVYYLLLFLWKFSLYERFVASLLNMLPSVQYSGERSV*AFIVGFCWLVRNLLCGHSW 220
           G +I++Y+  F+WK  ++ +  +S  N   +V ++ + +   F V    ++ N++ G  W
Sbjct: 61  GMWILFYMFYFIWKIIVWTKNRSSSSN--TNVNFNAKEN---FYVAITCIMVNVITGLCW 115

Query: 219 KFHPRKEFMPVFVGFVHVLWVLYCFISI*TLSRNCWKA 106
                 +      G +  L VLY       L   CW +
Sbjct: 116 MLFAAFQIYVFKNGHLPALDVLYRHYD---LESMCWNS 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,443,202
Number of Sequences: 219361
Number of extensions: 2472477
Number of successful extensions: 6247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6246
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 7902193040
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)