ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34m06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 1e-14
2gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 90 1e-14
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AK058992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
5gb|AY106592.1| Zea mays PCO063726 mRNA sequence 70 1e-08
6gb|AC116546.1| Homo sapiens 3 BAC RP11-312H1 (Roswell Park Cance... 46 0.17
7gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome 44 0.66
8dbj|AK047629.1| Mus musculus adult male corpus striatum cDNA, RI... 44 0.66
9gb|AC113964.18| Mus musculus chromosome 16, clone RP23-31O16, co... 44 0.66
10gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, comp... 42 2.6
11gb|AC161287.2| Pan troglodytes BAC clone CH251-267A11 from chrom... 42 2.6
12gb|AC147087.3| Pan troglodytes BAC clone RP43-59E13 from 7, comp... 42 2.6
13gb|AC183776.2| Pan troglodytes BAC clone CH251-246H3 from chromo... 42 2.6
14gb|AC127517.2| Homo sapiens chromosome 8, clone RP13-830M24, com... 42 2.6
15gb|AC105242.4| Homo sapiens chromosome 8, clone CTD-2386G14, com... 42 2.6
16gb|AC155654.16| Mus musculus 6 BAC RP24-192P21 (Roswell Park Can... 42 2.6
17gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete ... 42 2.6
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
19gb|AC137733.5| Homo sapiens chromosome 8, clone CTD-3061M5, comp... 42 2.6
20gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complet... 42 2.6
21dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 2.6
22dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
23dbj|AP006276.1| Homo sapiens genomic DNA, chromosome 8q13.3, clo... 42 2.6
24gb|AC153915.5| Mus musculus 10 BAC RP23-329D23 (Roswell Park Can... 42 2.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                           
Query: 675     cacacaccttcaacatgttttcattggcaccatgacgagggaggcctcagggacacatgg 734
               |||||||||| ||||||||   | ||||||||||||||||| ||||||| ||||||||| 
Sbjct: 9376859 cacacaccttgaacatgttaagactggcaccatgacgaggggggcctcatggacacatga 9376800

                                
Query: 735     acttcatgttcttcagg 751
               |||||||||||||||||
Sbjct: 9376799 acttcatgttcttcagg 9376783



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 431     taatccagatatgttccttgtggcctgtagcatgtccctacaa 473
               ||||||||||||||||||||||   |||||||||  |||||||
Sbjct: 9377104 taatccagatatgttccttgtgatatgtagcatggtcctacaa 9377062



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 210     gatgaaatttccaagaatgcccacaa 235
               |||||||||||||||||||| |||||
Sbjct: 9377332 gatgaaatttccaagaatgctcacaa 9377307
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 675   cacacaccttcaacatgttttcattggcaccatgacgagggaggcctcagggacacatgg 734
             |||||||||| ||||||||   | ||||||||||||||||| ||||||| ||||||||| 
Sbjct: 74259 cacacaccttgaacatgttaagactggcaccatgacgaggggggcctcatggacacatga 74200

                              
Query: 735   acttcatgttcttcagg 751
             |||||||||||||||||
Sbjct: 74199 acttcatgttcttcagg 74183



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 431   taatccagatatgttccttgtggcctgtagcatgtccctacaa 473
             ||||||||||||||||||||||   |||||||||  |||||||
Sbjct: 74504 taatccagatatgttccttgtgatatgtagcatggtcctacaa 74462



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 210   gatgaaatttccaagaatgcccacaa 235
             |||||||||||||||||||| |||||
Sbjct: 74732 gatgaaatttccaagaatgctcacaa 74707
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                           
Query: 675     cacacaccttcaacatgttttcattggcaccatgacgagggaggcctcagggacacatgg 734
               |||||||||| ||||||||   | ||||||||||||||||| ||||||| ||||||||| 
Sbjct: 9374980 cacacaccttgaacatgttaagactggcaccatgacgaggggggcctcatggacacatga 9374921

                                
Query: 735     acttcatgttcttcagg 751
               |||||||||||||||||
Sbjct: 9374920 acttcatgttcttcagg 9374904



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 431     taatccagatatgttccttgtggcctgtagcatgtccctacaa 473
               ||||||||||||||||||||||   |||||||||  |||||||
Sbjct: 9375225 taatccagatatgttccttgtgatatgtagcatggtcctacaa 9375183



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 210     gatgaaatttccaagaatgcccacaa 235
               |||||||||||||||||||| |||||
Sbjct: 9375453 gatgaaatttccaagaatgctcacaa 9375428
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>dbj|AK058992.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F09, full
           insert sequence
          Length = 1002

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 675 cacacaccttcaacatgttttcattggcaccatgacgagggaggcctcagggacacatgg 734
           |||||||||| ||||||||   | ||||||||||||||||| ||||||| ||||||||| 
Sbjct: 747 cacacaccttgaacatgttaagactggcaccatgacgaggggggcctcatggacacatga 688

                            
Query: 735 acttcatgttcttcagg 751
           |||||||||||||||||
Sbjct: 687 acttcatgttcttcagg 671



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 431 taatccagatatgttccttgtggcctgtagcatgtccctacaa 473
           ||||||||||||||||||||||   |||||||||  |||||||
Sbjct: 992 taatccagatatgttccttgtgatatgtagcatggtcctacaa 950
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>gb|AY106592.1| Zea mays PCO063726 mRNA sequence
          Length = 752

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 693 tttcattggcaccatgacgagggaggcctcagggacacatggacttcatgttcttcagg 751
           |||||||||||||| |||||||| ||||||| ||||||||| ||||| ||| |||||||
Sbjct: 125 tttcattggcaccaggacgagggtggcctcatggacacatgcacttcgtgtgcttcagg 67



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 536 aattagcaaaactgagctgcatttgttgt 564
           |||||||||||||||||||||||||||||
Sbjct: 224 aattagcaaaactgagctgcatttgttgt 196
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>gb|AC116546.1| Homo sapiens 3 BAC RP11-312H1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160421

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 625   caagagcagctgacaataatgga 647
             |||||||||||||||||||||||
Sbjct: 40207 caagagcagctgacaataatgga 40229
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>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome
          Length = 1471282

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 318    tattgagcaggctggctacaaacctt 343
              ||||||| ||||||||||||||||||
Sbjct: 718305 tattgagaaggctggctacaaacctt 718280
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>dbj|AK047629.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
           enriched library, clone:C030003K05
           product:unclassifiable, full insert sequence
          Length = 2095

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 653 taactactacatgaacatctat 674
           ||||||||||||||||||||||
Sbjct: 297 taactactacatgaacatctat 318
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>gb|AC113964.18| Mus musculus chromosome 16, clone RP23-31O16, complete sequence
          Length = 213851

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 653   taactactacatgaacatctat 674
             ||||||||||||||||||||||
Sbjct: 67069 taactactacatgaacatctat 67090
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>gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, complete sequence
          Length = 190776

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 664   tgaacatctatcacacacctt 684
             |||||||||||||||||||||
Sbjct: 24342 tgaacatctatcacacacctt 24322
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>gb|AC161287.2| Pan troglodytes BAC clone CH251-267A11 from chromosome 7, complete
            sequence
          Length = 166684

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 664  tgaacatctatcacacacctt 684
            |||||||||||||||||||||
Sbjct: 9288 tgaacatctatcacacacctt 9308
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>gb|AC147087.3| Pan troglodytes BAC clone RP43-59E13 from 7, complete sequence
          Length = 130280

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 664   tgaacatctatcacacacctt 684
             |||||||||||||||||||||
Sbjct: 37081 tgaacatctatcacacacctt 37061
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>gb|AC183776.2| Pan troglodytes BAC clone CH251-246H3 from chromosome 7, complete
             sequence
          Length = 160056

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 664   tgaacatctatcacacacctt 684
             |||||||||||||||||||||
Sbjct: 48133 tgaacatctatcacacacctt 48113
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>gb|AC127517.2| Homo sapiens chromosome 8, clone RP13-830M24, complete sequence
          Length = 29823

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 705  catgacgagggaggcctcagg 725
            |||||||||||||||||||||
Sbjct: 7387 catgacgagggaggcctcagg 7407
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>gb|AC105242.4| Homo sapiens chromosome 8, clone CTD-2386G14, complete sequence
          Length = 112928

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 705    catgacgagggaggcctcagg 725
              |||||||||||||||||||||
Sbjct: 106635 catgacgagggaggcctcagg 106615
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>gb|AC155654.16| Mus musculus 6 BAC RP24-192P21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 147486

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 208    tggatgaaatttccaagaatgccca 232
              |||||||||||| ||||||||||||
Sbjct: 103390 tggatgaaattttcaagaatgccca 103366
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>gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete sequence
          Length = 157183

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   gtccctacaattccacagctg 484
             |||||||||||||||||||||
Sbjct: 77479 gtccctacaattccacagctg 77499
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 135      aaatgctaataaaacaatata 155
                |||||||||||||||||||||
Sbjct: 18602704 aaatgctaataaaacaatata 18602684
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>gb|AC137733.5| Homo sapiens chromosome 8, clone CTD-3061M5, complete sequence
          Length = 28150

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 705  catgacgagggaggcctcagg 725
            |||||||||||||||||||||
Sbjct: 6630 catgacgagggaggcctcagg 6610
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>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence
          Length = 203428

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   ttcaaatgctaataaaacaat 152
             |||||||||||||||||||||
Sbjct: 42650 ttcaaatgctaataaaacaat 42630
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 198     actccttccttggatgaaatt 218
               |||||||||||||||||||||
Sbjct: 2876474 actccttccttggatgaaatt 2876454
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>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0516D04
          Length = 140491

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   aaatgctaataaaacaatata 155
             |||||||||||||||||||||
Sbjct: 25977 aaatgctaataaaacaatata 25957
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>dbj|AP006276.1| Homo sapiens genomic DNA, chromosome 8q13.3, clone: KB1315B7, complete
              sequence
          Length = 147415

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 705    catgacgagggaggcctcagg 725
              |||||||||||||||||||||
Sbjct: 131116 catgacgagggaggcctcagg 131096
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>gb|AC153915.5| Mus musculus 10 BAC RP23-329D23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207169

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 208    tggatgaaatttccaagaatgccca 232
              |||||||||||| ||||||||||||
Sbjct: 170184 tggatgaaattttcaagaatgccca 170208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,113,936
Number of Sequences: 3902068
Number of extensions: 7113936
Number of successful extensions: 136493
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136230
Number of HSP's gapped (non-prelim): 263
length of query: 753
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 730
effective length of database: 17,143,297,704
effective search space: 12514607323920
effective search space used: 12514607323920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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