ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1o06 |
|---|---|
| Clone Library Name | barley_pub |
>CDC65_HALMA (Q5UYP1) Cell division control protein 6 homolog 5 (CDC6 homolog 5)| Length = 375 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 410 RDTVLVVCTYKLEPAAV-SLPLNLCLPNPDASG*TTAIEFLLE 535 RDT + Y L PA S PLN+ P +G TTA++ L + Sbjct: 35 RDTQMETLKYALRPAVRGSRPLNVIARGPPGTGKTTAVQILFD 77
>HMB1_TRIGR (P09080) Homeobox protein HB1 (TGHBOX1) (Fragment)| Length = 307 Score = 30.0 bits (66), Expect = 4.8 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 498 ASGLGKQRFRGRLTA--AGSSLYVHTTSTVSRDHLGRLFSPCK 376 A+ LG +RGR+ A AG+ V + + +H ++ SPCK Sbjct: 126 AAELGDGSYRGRVNALAAGTGCLVSAAAEPNNNHCSQVMSPCK 168
>GUAC_LACAC (Q5FHY3) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 330 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+PL+A G Sbjct: 186 TGFGTGGWQLAALRMCSKVASKPLIADGG 214
>SOX3_MOUSE (P53784) Transcription factor SOX-3| Length = 375 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Frame = -3 Query: 310 WPPAAYELN*ILMRQDGTSQSQHAPALSSPLPTDGLPLLHYY------YFPSLPTG 161 W AY L + Q G +Q P++SSP P LP +H Y Y P +P G Sbjct: 196 WANGAYSL---VQEQLGYAQP---PSMSSPPPPPALPQMHRYDMAGLQYSPMMPPG 245
>SOX3_HUMAN (P41225) Transcription factor SOX-3| Length = 446 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Frame = -3 Query: 310 WPPAAYELN*ILMRQDGTSQSQHAPALSSPLPTDGLPLLHYY------YFPSLPTG 161 W AY L + Q G +Q P++SSP P LP +H Y Y P +P G Sbjct: 267 WANGAYSL---VQEQLGYAQP---PSMSSPPPPPALPPMHRYDMAGLQYSPMMPPG 316
>GUAC_OCEIH (Q8ERJ2) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209
>GUAC_BACHK (Q6HAI0) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209
>GUAC_BACCZ (Q630E8) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209
>GUAC_BACC1 (Q72WY4) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209
>GUAC_BACAN (Q81JJ9) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 327 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209
>GUAC_BACSK (Q5WD10) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 328 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 182 TGFGTGGWQLAALRWCAKAASKPIIADGG 210
>GUAC_BACCR (Q814I1) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 328 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 182 TGFGTGGWQLAALRWCAKAASKPIIADGG 210
>GUAC_BACSU (O05269) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 326 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209
>GUAC_BACLD (Q65LF6) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate| oxidoreductase) (Guanosine monophosphate reductase) Length = 326 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 409 TGYCTGGMYVQARACCCEPASEPLLAQSG 495 TG+ TGG + A C + AS+P++A G Sbjct: 181 TGFGTGGWQLAALRWCAKAASKPIIADGG 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,600,655 Number of Sequences: 219361 Number of extensions: 1809834 Number of successful extensions: 5053 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4780 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5048 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
