Clone Information

BLAST Search Result

Clone Name	rbags35b03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK122001.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	129	1e-26
2	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
3	emb\|AL731599.2\|OSJN00244 Oryza sativa genomic DNA, chromosome 4,...	119	1e-23
4	ref\|XM_472287.1\| Oryza sativa (japonica cultivar-group), predic...	117	5e-23
5	emb\|AJ235272.1\|RPXX03 Rickettsia prowazekii strain Madrid E, com...	46	0.15
6	gb\|AC159631.2\| Mus musculus BAC clone RP24-177F21 from chromosom...	44	0.61
7	gb\|AC122228.4\| Mus musculus BAC clone RP23-131N12 from chromosom...	44	0.61
8	gb\|AC102381.12\| Mus musculus chromosome 8, clone RP24-180I19, co...	42	2.4
9	gb\|AC107690.10\| Mus musculus chromosome 3, clone RP24-349N15, co...	42	2.4
10	ref\|XM_632080.1\| Dictyostelium discoideum hypothetical protein (...	42	2.4
11	gb\|AC161528.14\| Mus musculus chromosome 8, clone RP23-369H18, co...	42	2.4
12	ref\|XM_422093.1\| PREDICTED: Gallus gallus similar to proton-depe...	42	2.4
13	gb\|AC145863.3\| Pan troglodytes BAC clone RP43-6J8 from 7, comple...	42	2.4
14	gb\|AC005911.6\| Homo sapiens 12 BAC RP11-372B4 (Roswell Park Canc...	42	2.4
15	emb\|AL390236.21\| Human DNA sequence from clone RP11-380J17 on ch...	42	2.4
16	gb\|AC113426.2\| Homo sapiens chromosome 5 clone RP11-718N2, compl...	42	2.4
17	emb\|AL162615.13\| Human DNA sequence from clone RP5-1041C10 on ch...	42	2.4
18	emb\|AL136975.6\| Human DNA sequence from clone RP3-449G2 on chrom...	42	2.4
19	gb\|AC018924.9\| Homo sapiens chromosome 15 clone RP11-355D13 map ...	42	2.4
20	tpg\|BK002714.1\| TPA: TPA_inf: Drosophila melanogaster HDC14730 (...	42	2.4
21	gb\|AC008393.7\| Homo sapiens chromosome 5 clone CTC-241N9, comple...	42	2.4
22	gb\|AC158369.4\| Pan troglodytes BAC clone CH251-554F11 from chrom...	42	2.4
23	gb\|AC009348.6\|AC009348 Drosophila melanogaster, chromosome 3R, r...	42	2.4
24	gb\|CP000252.1\| Syntrophus aciditrophicus SB, complete genome	42	2.4
25	emb\|AL583785.2\|HS536O18 Homo sapiens chromosome 9 BAC RP11-536O1...	42	2.4
26	gb\|AE003732.3\| Drosophila melanogaster chromosome 3R, section 70...	42	2.4
27	emb\|AL732517.20\| Mouse DNA sequence from clone RP23-134K17 on ch...	42	2.4
28	emb\|AL583885.17\| Mouse DNA sequence from clone RP23-323K24 on ch...	42	2.4
29	gb\|AF030453.1\| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22...	40	9.5
30	gb\|AC027184.15\| Mus musculus chromosome 14, clone RP23-138C14, c...	40	9.5
31	gb\|AE017197.1\| Rickettsia typhi str. Wilmington complete genome	40	9.5
32	gb\|AC115746.10\| Mus musculus chromosome 15, clone RP23-3J8, comp...	40	9.5
33	gb\|AC121121.13\| Mus musculus chromosome 9, clone RP23-401G21, co...	40	9.5
34	gb\|AC005088.3\| Homo sapiens BAC clone CTA-313A17 from 7, complet...	40	9.5
35	gb\|AC127256.4\| Mus musculus BAC clone RP24-296G17 from chromosom...	40	9.5
36	emb\|Z78417.1\|CEC35C5 Caenorhabditis elegans Cosmid C35C5, comple...	40	9.5
37	gb\|AC121580.3\| Mus musculus BAC clone RP23-255J21 from 9, comple...	40	9.5
38	gb\|AC110379.3\| Mus musculus BAC clone RP24-193N24 from 15, compl...	40	9.5
39	gb\|AC009022.10\| Homo sapiens chromosome 16 clone RP11-106J23, co...	40	9.5
40	emb\|BX537254.7\| Human DNA sequence from clone RP6-74O6 on chromo...	40	9.5
41	emb\|BX511042.2\| Human DNA sequence from clone RP11-300L20 on chr...	40	9.5
42	emb\|AL360229.16\| Human DNA sequence from clone RP11-313N18 on ch...	40	9.5
43	gb\|AE014837.1\| Plasmodium falciparum 3D7 chromosome 11 section 2...	40	9.5
44	emb\|AL356004.9\| Human DNA sequence from clone RP11-94I2 on chrom...	40	9.5
45	gb\|AC159882.2\| Mus musculus BAC clone RP24-480A4 from chromosome...	40	9.5
46	emb\|AL606631.2\|OSJN00069 Oryza sativa genomic DNA, chromosome 4,...	40	9.5
47	gb\|AC011028.11\| Homo sapiens chromosome 8, clone RP11-118J17, co...	40	9.5
48	gb\|AC104561.3\| Homo sapiens chromosome 8, clone CTC-756D1, compl...	40	9.5
49	gb\|AC112909.4\| Homo sapiens 3 BAC RP11-814O5 (Roswell Park Cance...	40	9.5
50	gb\|AC024561.5\| Homo sapiens chromosome 5 clone CTB-94B10, comple...	40	9.5
51	gb\|AC091390.1\|AC091390 Homo sapiens chromosome 7q22, complete se...	40	9.5
52	gb\|AC140344.3\| Mus musculus BAC clone RP23-237M10 from chromosom...	40	9.5
53	gb\|AC159885.2\| Mus musculus BAC clone RP24-432B19 from chromosom...	40	9.5
54	gb\|AC148297.3\| Pan troglodytes BAC clone CH251-542K24 from chrom...	40	9.5
55	gb\|AC007224.5\| Homo sapiens chromosome 16 clone RP11-475D10, com...	40	9.5
56	gb\|AC008235.4\|AC008235 Drosophila melanogaster, chromosome 3R, r...	40	9.5
57	gb\|AY190949.1\| Drosophila pseudoobscura clone DPSF01_8_J08 (D142...	40	9.5
58	gb\|AC093127.3\| Papio anubis clone RP41-335G18, complete sequence	40	9.5
59	gb\|AE003743.3\| Drosophila melanogaster chromosome 3R, section 81...	40	9.5
60	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	9.5
61	emb\|CT025738.5\| Mouse DNA sequence from clone RP24-378G24 on chr...	40	9.5
62	gb\|AC120163.10\| Mus musculus chromosome 15, clone RP24-466O11, c...	40	9.5
63	dbj\|AP001330.3\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.5

>dbj|AK122001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110J06, full
            insert sequence
          Length = 3630

 Score =  129 bits (65), Expect = 1e-26
 Identities = 258/321 (80%), Gaps = 6/321 (1%)
 Strand = Plus / Minus

                                                                        
Query: 49   acaaattgatttgaagtgttacaggtgctctttg---ccaatccgggttcagacagcttt 105
            |||||||| |||||||||||| ||||||| |||    |||||| |||||||||| ||| |
Sbjct: 1554 acaaattgctttgaagtgttagaggtgctgtttttttccaatctgggttcagactgctct 1495

                                                                        
Query: 106  gaagactaatgtcatgagctgaaagagtattaatgccattgactacttcatctcttggta 165
            ||||||||  ||||||| |||||||||||||| ||||||||  | |||| ||||| || |
Sbjct: 1494 gaagactatagtcatgaactgaaagagtattagtgccattgtttccttcttctctgggca 1435

                                                                        
Query: 166  taaagtcataagatggtgagtcgacacagtcttctgataccagaagaaatcttttagaag 225
             | ||| |||||||||||| || | | |||||||||   ||| |||||||||||||| ||
Sbjct: 1434 catagttataagatggtgaatcaatagagtcttctgtctccaaaagaaatcttttagcag 1375

                                                                        
Query: 226  cagaaatttgcagctgcaaattactgctgtctaggcctcctggtggctgatattcagaac 285
            |||||||   | |||||| || |||| ||| ||| | ||||||||| |||||||| ||| 
Sbjct: 1374 cagaaat---ctgctgcatatcactgttgtatagacttcctggtggttgatattctgaat 1318

                                                                        
Query: 286  tttgctgatactgggcaccaaactggtatgtagacgaagctggcaaacctaaatcggact 345
            ||||  |||| |||| |    |||||||| |||| | |||||| |||||| ||  |||||
Sbjct: 1317 tttgtggatagtggggagttgactggtatatagaaggagctggaaaacctgaactggact 1258

                                 
Query: 346  gcacaacattttcccatgatg 366
            |||  |||| |||||||||||
Sbjct: 1257 gcagcacatcttcccatgatg 1237



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 521  tcatcatcacccaaacttaactgctcagcagtgctcttcaaagcttggttgagcgcagat 580
            |||||||| ||||| |||||||||||| || |   |||||||||| |||||||| |||||
Sbjct: 1075 tcatcatcccccaagcttaactgctcaacaatttgcttcaaagctcggttgagcccagat 1016

              
Query: 581  tt 582
            ||
Sbjct: 1015 tt 1014

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 1e-23
 Identities = 199/244 (81%), Gaps = 6/244 (2%)
 Strand = Plus / Minus

                                                                            
Query: 49       acaaattgatttgaagtgttacaggtgctctttg---ccaatccgggttcagacagcttt 105
                |||||||| |||||||||||| ||||||| |||    |||||| |||||||||| ||| |
Sbjct: 19121215 acaaattgctttgaagtgttagaggtgctgtttttttccaatctgggttcagactgctct 19121156

                                                                            
Query: 106      gaagactaatgtcatgagctgaaagagtattaatgccattgactacttcatctcttggta 165
                ||||||||  ||||||| |||||||||||||| ||||||||  | |||| ||||| || |
Sbjct: 19121155 gaagactatagtcatgaactgaaagagtattagtgccattgtttccttcttctctgggca 19121096

                                                                            
Query: 166      taaagtcataagatggtgagtcgacacagtcttctgataccagaagaaatcttttagaag 225
                 | ||| |||||||||||| || | | |||||||||   ||| |||||||||||||| ||
Sbjct: 19121095 catagttataagatggtgaatcaatagagtcttctgtctccaaaagaaatcttttagcag 19121036

                                                                            
Query: 226      cagaaatttgcagctgcaaattactgctgtctaggcctcctggtggctgatattcagaac 285
                |||||||   | |||||| || |||| ||| ||| | ||||||||| |||||||| ||| 
Sbjct: 19121035 cagaaat---ctgctgcatatcactgttgtatagacttcctggtggttgatattctgaat 19120979

                    
Query: 286      tttg 289
                ||||
Sbjct: 19120978 tttg 19120975



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 521      tcatcatcacccaaacttaactgctcagcagtgctcttcaaagcttggttgagcgcagat 580
                |||||||| ||||| |||||||||||| || |   |||||||||| |||||||| |||||
Sbjct: 19119734 tcatcatcccccaagcttaactgctcaacaatttgcttcaaagctcggttgagcccagat 19119675

                  
Query: 581      tt 582
                ||
Sbjct: 19119674 tt 19119673



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 496    agggcacttgatttatgtaaatat 519
              |||||||||||||||| |||||||
Sbjct: 988744 agggcacttgatttatttaaatat 988721

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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  119 bits (60), Expect = 1e-23
 Identities = 199/244 (81%), Gaps = 6/244 (2%)
 Strand = Plus / Minus

                                                                         
Query: 49    acaaattgatttgaagtgttacaggtgctctttg---ccaatccgggttcagacagcttt 105
             |||||||| |||||||||||| ||||||| |||    |||||| |||||||||| ||| |
Sbjct: 54736 acaaattgctttgaagtgttagaggtgctgtttttttccaatctgggttcagactgctct 54677

                                                                         
Query: 106   gaagactaatgtcatgagctgaaagagtattaatgccattgactacttcatctcttggta 165
             ||||||||  ||||||| |||||||||||||| ||||||||  | |||| ||||| || |
Sbjct: 54676 gaagactatagtcatgaactgaaagagtattagtgccattgtttccttcttctctgggca 54617

                                                                         
Query: 166   taaagtcataagatggtgagtcgacacagtcttctgataccagaagaaatcttttagaag 225
              | ||| |||||||||||| || | | |||||||||   ||| |||||||||||||| ||
Sbjct: 54616 catagttataagatggtgaatcaatagagtcttctgtctccaaaagaaatcttttagcag 54557

                                                                         
Query: 226   cagaaatttgcagctgcaaattactgctgtctaggcctcctggtggctgatattcagaac 285
             |||||||   | |||||| || |||| ||| ||| | ||||||||| |||||||| ||| 
Sbjct: 54556 cagaaat---ctgctgcatatcactgttgtatagacttcctggtggttgatattctgaat 54500

                 
Query: 286   tttg 289
             ||||
Sbjct: 54499 tttg 54496



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 521   tcatcatcacccaaacttaactgctcagcagtgctcttcaaagcttggttgagcgcagat 580
             |||||||| ||||| |||||||||||| || |   |||||||||| |||||||| |||||
Sbjct: 53255 tcatcatcccccaagcttaactgctcaacaatttgcttcaaagctcggttgagcccagat 53196

               
Query: 581   tt 582
             ||
Sbjct: 53195 tt 53194

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>ref|XM_472287.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2859

 Score =  117 bits (59), Expect = 5e-23
 Identities = 192/235 (81%), Gaps = 6/235 (2%)
 Strand = Plus / Minus

                                                                        
Query: 49   acaaattgatttgaagtgttacaggtgctctttg---ccaatccgggttcagacagcttt 105
            |||||||| |||||||||||| ||||||| |||    |||||| |||||||||| ||| |
Sbjct: 1093 acaaattgctttgaagtgttagaggtgctgtttttttccaatctgggttcagactgctct 1034

                                                                        
Query: 106  gaagactaatgtcatgagctgaaagagtattaatgccattgactacttcatctcttggta 165
            ||||||||  ||||||| |||||||||||||| ||||||||  | |||| ||||| || |
Sbjct: 1033 gaagactatagtcatgaactgaaagagtattagtgccattgtttccttcttctctgggca 974

                                                                        
Query: 166  taaagtcataagatggtgagtcgacacagtcttctgataccagaagaaatcttttagaag 225
             | ||| |||||||||||| || | | |||||||||   ||| |||||||||||||| ||
Sbjct: 973  catagttataagatggtgaatcaatagagtcttctgtctccaaaagaaatcttttagcag 914

                                                                   
Query: 226  cagaaatttgcagctgcaaattactgctgtctaggcctcctggtggctgatattc 280
            |||||||   | |||||| || |||| ||| ||| | ||||||||| ||||||||
Sbjct: 913  cagaaat---ctgctgcatatcactgttgtatagacttcctggtggttgatattc 862



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 521 tcatcatcacccaaacttaactgctcagcagtgctcttcaaagcttggttgagcgcagat 580
           |||||||| ||||| |||||||||||| || |   |||||||||| |||||||| |||||
Sbjct: 767 tcatcatcccccaagcttaactgctcaacaatttgcttcaaagctcggttgagcccagat 708

             
Query: 581 tt 582
           ||
Sbjct: 707 tt 706

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>emb|AJ235272.1|RPXX03 Rickettsia prowazekii strain Madrid E, complete genome; segment 3/4
          Length = 279110

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 218    tttagaagcagaaatttgcagct 240
              |||||||||||||||||||||||
Sbjct: 101765 tttagaagcagaaatttgcagct 101743

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>gb|AC159631.2| Mus musculus BAC clone RP24-177F21 from chromosome 12, complete
             sequence
          Length = 171538

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 623   gttccagactagtctgggcaag 644
             ||||||||||||||||||||||
Sbjct: 17178 gttccagactagtctgggcaag 17157

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>gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosome 12, complete
            sequence
          Length = 202970

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 623  gttccagactagtctgggcaag 644
            ||||||||||||||||||||||
Sbjct: 3254 gttccagactagtctgggcaag 3275

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>gb|AC102381.12| Mus musculus chromosome 8, clone RP24-180I19, complete sequence
          Length = 190298

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 623    gttccagactagtctgggcaa 643
              |||||||||||||||||||||
Sbjct: 104981 gttccagactagtctgggcaa 105001

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>gb|AC107690.10| Mus musculus chromosome 3, clone RP24-349N15, complete sequence
          Length = 166260

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 384   acagcatgcattccttctggt 404
             |||||||||||||||||||||
Sbjct: 90087 acagcatgcattccttctggt 90067

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>ref|XM_632080.1| Dictyostelium discoideum hypothetical protein (DDB0215912), partial
           mRNA
          Length = 162

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 503 ttgatttatgtaaatatatcatcatcacc 531
           ||||||||| ||||||||||||| |||||
Sbjct: 50  ttgatttatttaaatatatcatcgtcacc 78

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>gb|AC161528.14| Mus musculus chromosome 8, clone RP23-369H18, complete sequence
          Length = 206302

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 623    gttccagactagtctgggcaa 643
              |||||||||||||||||||||
Sbjct: 180257 gttccagactagtctgggcaa 180237

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>ref|XM_422093.1| PREDICTED: Gallus gallus similar to proton-dependent high affinity
            oligopeptide transporter (LOC424244), mRNA
          Length = 4122

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 258  aggcctcctggtggctgatat 278
            |||||||||||||||||||||
Sbjct: 2517 aggcctcctggtggctgatat 2537

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>gb|AC145863.3| Pan troglodytes BAC clone RP43-6J8 from 7, complete sequence
          Length = 190714

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 623   gttccagactagtctgggcaa 643
             |||||||||||||||||||||
Sbjct: 97599 gttccagactagtctgggcaa 97579

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>gb|AC005911.6| Homo sapiens 12 BAC RP11-372B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100701

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 623   gttccagactagtctgggcaa 643
             |||||||||||||||||||||
Sbjct: 94254 gttccagactagtctgggcaa 94234

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>emb|AL390236.21| Human DNA sequence from clone RP11-380J17 on chromosome 10 Contains the
             3' end of the PTPRE gene for protein tyrosine phosphatase
             receptor type E and the 3' end of the MKI67 gene for
             antigen identified by monoclonal antibody Ki-67, complete
             sequence
          Length = 123057

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   tctaggcctcctggtggctga 275
             |||||||||||||||||||||
Sbjct: 34139 tctaggcctcctggtggctga 34119

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>gb|AC113426.2| Homo sapiens chromosome 5 clone RP11-718N2, complete sequence
          Length = 179627

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 248    actgctgtctaggcctcctgg 268
              |||||||||||||||||||||
Sbjct: 161932 actgctgtctaggcctcctgg 161912

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>emb|AL162615.13| Human DNA sequence from clone RP5-1041C10 on chromosome 20 Contains the
             5' end of the B4GALT5 gene for UDP-Gal:betaGlcNAc beta
             1,4-galactosyltransferase polypeptide 5, b, the SNRPFP1
             gene for small nuclear ribonucleoprotein polypeptide F
             pseudogene 1, a cytokine-like nuclear factor n-pac (N-PAC)
             pseudogene, the 5' end of the SLC9A8 gene for solute
             carrier family 9 (sodium/hydrogen exchanger) isoform 8 and
             two CpG islands, complete sequence
          Length = 140092

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 623   gttccagactagtctgggcaa 643
             |||||||||||||||||||||
Sbjct: 48460 gttccagactagtctgggcaa 48480

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>emb|AL136975.6| Human DNA sequence from clone RP3-449G2 on chromosome 6 Contains a CpG
             island, complete sequence
          Length = 52029

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 503   ttgatttatgtaaatatatca 523
             |||||||||||||||||||||
Sbjct: 25685 ttgatttatgtaaatatatca 25665

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>gb|AC018924.9| Homo sapiens chromosome 15 clone RP11-355D13 map 15q15, complete
             sequence
          Length = 182764

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 623   gttccagactagtctgggcaa 643
             |||||||||||||||||||||
Sbjct: 25164 gttccagactagtctgggcaa 25184

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>tpg|BK002714.1| TPA: TPA_inf: Drosophila melanogaster HDC14730 (HDC14730) gene,
           complete cds
          Length = 2652

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 233 ttgcagctgcaaattactgctgtct 257
           ||||||||||||||| |||||||||
Sbjct: 522 ttgcagctgcaaattcctgctgtct 546

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>gb|AC008393.7| Homo sapiens chromosome 5 clone CTC-241N9, complete sequence
          Length = 166847

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   actgctgtctaggcctcctgg 268
             |||||||||||||||||||||
Sbjct: 31926 actgctgtctaggcctcctgg 31906

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>gb|AC158369.4| Pan troglodytes BAC clone CH251-554F11 from chromosome unknown,
             complete sequence
          Length = 201901

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 623   gttccagactagtctgggcaa 643
             |||||||||||||||||||||
Sbjct: 99579 gttccagactagtctgggcaa 99599

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>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
             BACR05I01, complete sequence
          Length = 187151

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 233   ttgcagctgcaaattactgctgtct 257
             ||||||||||||||| |||||||||
Sbjct: 43884 ttgcagctgcaaattcctgctgtct 43908

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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 336     aaatcggactgcacaacattttccc 360
               ||||||||||||| |||||||||||
Sbjct: 1520905 aaatcggactgcagaacattttccc 1520929

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>emb|AL583785.2|HS536O18 Homo sapiens chromosome 9 BAC RP11-536O18, complete sequence
          Length = 174798

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 623   gttccagactagtctgggcaa 643
             |||||||||||||||||||||
Sbjct: 91170 gttccagactagtctgggcaa 91150

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>gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70 of 118 of the complete
              sequence
          Length = 224529

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 233    ttgcagctgcaaattactgctgtct 257
              ||||||||||||||| |||||||||
Sbjct: 192216 ttgcagctgcaaattcctgctgtct 192240

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>emb|AL732517.20| Mouse DNA sequence from clone RP23-134K17 on chromosome 4, complete
              sequence
          Length = 139314

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 448    gatttccctgtacatctgcag 468
              |||||||||||||||||||||
Sbjct: 125775 gatttccctgtacatctgcag 125755

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>emb|AL583885.17| Mouse DNA sequence from clone RP23-323K24 on chromosome 15, complete
            sequence
          Length = 136387

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 309  tggtatgtagacgaagctggc 329
            |||||||||||||||||||||
Sbjct: 9720 tggtatgtagacgaagctggc 9740

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>gb|AF030453.1| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22, complete sequence
          Length = 125108

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 624   ttccagactagtctgggcaa 643
             ||||||||||||||||||||
Sbjct: 76584 ttccagactagtctgggcaa 76603

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>gb|AC027184.15| Mus musculus chromosome 14, clone RP23-138C14, complete sequence
          Length = 196806

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 196   cttctgataccagaagaaatcttttaga 223
             ||||||||||| ||||||||||| ||||
Sbjct: 91036 cttctgatacctgaagaaatcttgtaga 91009

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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    tttagaagcagaaatttgca 237
              ||||||||||||||||||||
Sbjct: 703724 tttagaagcagaaatttgca 703705

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>gb|AC115746.10| Mus musculus chromosome 15, clone RP23-3J8, complete sequence
          Length = 214765

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    ttgcttgtctgatttccctg 457
              ||||||||||||||||||||
Sbjct: 179758 ttgcttgtctgatttccctg 179777

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>gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, complete sequence
          Length = 226672

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   atttggaacttcgttccaga 630
             ||||||||||||||||||||
Sbjct: 52967 atttggaacttcgttccaga 52986

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>gb|AC005088.3| Homo sapiens BAC clone CTA-313A17 from 7, complete sequence
          Length = 158663

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 624    ttccagactagtctgggcaa 643
              ||||||||||||||||||||
Sbjct: 108206 ttccagactagtctgggcaa 108225

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>gb|AC127256.4| Mus musculus BAC clone RP24-296G17 from chromosome 18, complete
             sequence
          Length = 178519

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    gttcagacagctttgaagac 111
             ||||||||||||||||||||
Sbjct: 38478 gttcagacagctttgaagac 38497

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>emb|Z78417.1|CEC35C5 Caenorhabditis elegans Cosmid C35C5, complete sequence
          Length = 44088

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aacacaaattgatttgaagt 65
             ||||||||||||||||||||
Sbjct: 34918 aacacaaattgatttgaagt 34899

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>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence
          Length = 200282

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 611   atttggaacttcgttccaga 630
             ||||||||||||||||||||
Sbjct: 55023 atttggaacttcgttccaga 55004

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>gb|AC110379.3| Mus musculus BAC clone RP24-193N24 from 15, complete sequence
          Length = 139884

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   ttgcttgtctgatttccctg 457
             ||||||||||||||||||||
Sbjct: 91607 ttgcttgtctgatttccctg 91626

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>gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, complete sequence
          Length = 190577

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 624    ttccagactagtctgggcaa 643
              ||||||||||||||||||||
Sbjct: 137403 ttccagactagtctgggcaa 137384

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>emb|BX537254.7| Human DNA sequence from clone RP6-74O6 on chromosome 1 Contains the 3'
             end of the putative G-protein coupled receptor (SH120), a
             novel gene and four CpG islands, complete sequence
          Length = 121309

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   atgtaaatatatcatcatca 529
             ||||||||||||||||||||
Sbjct: 57353 atgtaaatatatcatcatca 57334

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>emb|BX511042.2| Human DNA sequence from clone RP11-300L20 on chromosome 1 Contains
            part of the gene for putative G-protein coupled receptor
            SH120, complete sequence
          Length = 47106

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 510  atgtaaatatatcatcatca 529
            ||||||||||||||||||||
Sbjct: 2394 atgtaaatatatcatcatca 2413

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>emb|AL360229.16| Human DNA sequence from clone RP11-313N18 on chromosome 10 Contains the
             5' end of the FER1L3 gene for fer-1-like 3, myoferlin (C.
             elegans), complete sequence
          Length = 67326

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   ttgtagcaaagtccaaagag 497
             ||||||||||||||||||||
Sbjct: 39097 ttgtagcaaagtccaaagag 39116

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>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete
              sequence
          Length = 257757

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 504    tgatttatgtaaatatatca 523
              ||||||||||||||||||||
Sbjct: 217047 tgatttatgtaaatatatca 217028

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>emb|AL356004.9| Human DNA sequence from clone RP11-94I2 on chromosome 1 Contains the 3'
             end of the gene for a novel protein similar to putative
             G-protein coupled receptor SH120, the gene for a novel
             protein similar to PDZ domain containing 1 PDZK1, a novel
             gene, a phosphodiesterase 4D interacting protein
             (myomegalin) (PDE4DIP) pseudogene and three CpG islands,
             complete sequence
          Length = 166098

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   atgtaaatatatcatcatca 529
             ||||||||||||||||||||
Sbjct: 36426 atgtaaatatatcatcatca 36407

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>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    acagctttgaagactaatgt 117
             ||||||||||||||||||||
Sbjct: 73080 acagctttgaagactaatgt 73061

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>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
             complete sequence
          Length = 140948

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 496   agggcacttgatttatgtaaatat 519
             |||||||||||||||| |||||||
Sbjct: 68463 agggcacttgatttatttaaatat 68440

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>gb|AC011028.11| Homo sapiens chromosome 8, clone RP11-118J17, complete sequence
          Length = 181598

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   atgtccccctgccaacagca 389
             ||||||||||||||||||||
Sbjct: 44712 atgtccccctgccaacagca 44731

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>gb|AC104561.3| Homo sapiens chromosome 8, clone CTC-756D1, complete sequence
          Length = 155366

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   taactgctcagcagtgctct 557
             ||||||||||||||||||||
Sbjct: 28066 taactgctcagcagtgctct 28047

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>gb|AC112909.4| Homo sapiens 3 BAC RP11-814O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114411

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aatgtcatgagctgaaagag 132
             ||||||||||||||||||||
Sbjct: 50354 aatgtcatgagctgaaagag 50373

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>gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, complete sequence
          Length = 155125

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 647   ctggtatccccattacagtt 666
             ||||||||||||||||||||
Sbjct: 62198 ctggtatccccattacagtt 62179

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>gb|AC091390.1|AC091390 Homo sapiens chromosome 7q22, complete sequence
          Length = 120166

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 624   ttccagactagtctgggcaa 643
             ||||||||||||||||||||
Sbjct: 73131 ttccagactagtctgggcaa 73112

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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence
          Length = 205862

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 511    tgtaaatatatcatcatcac 530
              ||||||||||||||||||||
Sbjct: 194572 tgtaaatatatcatcatcac 194553

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>gb|AC159885.2| Mus musculus BAC clone RP24-432B19 from chromosome 12, complete
             sequence
          Length = 177570

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tcagacagctttgaagacta 113
             ||||||||||||||||||||
Sbjct: 87808 tcagacagctttgaagacta 87827

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>gb|AC148297.3| Pan troglodytes BAC clone CH251-542K24 from chromosome 7, complete
              sequence
          Length = 192516

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 624    ttccagactagtctgggcaa 643
              ||||||||||||||||||||
Sbjct: 160886 ttccagactagtctgggcaa 160905

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>gb|AC007224.5| Homo sapiens chromosome 16 clone RP11-475D10, complete sequence
          Length = 185327

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 623    gttccagactagtctgggca 642
              ||||||||||||||||||||
Sbjct: 138718 gttccagactagtctgggca 138699

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>gb|AC008235.4|AC008235 Drosophila melanogaster, chromosome 3R, region 94F-95A, BAC clone
             BACR15B19, complete sequence
          Length = 175669

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   gcagaaatttgcagctgcaa 244
             ||||||||||||||||||||
Sbjct: 60731 gcagaaatttgcagctgcaa 60712

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>gb|AY190949.1| Drosophila pseudoobscura clone DPSF01_8_J08 (D1424) genomic sequence
          Length = 42117

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   gaagcagaaatttgcagctgcaaa 245
             |||| |||||||||||||||||||
Sbjct: 24859 gaagaagaaatttgcagctgcaaa 24882

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>gb|AC093127.3| Papio anubis clone RP41-335G18, complete sequence
          Length = 89944

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 624   ttccagactagtctgggcaa 643
             ||||||||||||||||||||
Sbjct: 48470 ttccagactagtctgggcaa 48489

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>gb|AE003743.3| Drosophila melanogaster chromosome 3R, section 81 of 118 of the
             complete sequence
          Length = 210258

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   gcagaaatttgcagctgcaa 244
             ||||||||||||||||||||
Sbjct: 69037 gcagaaatttgcagctgcaa 69018

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 138     atgccattgactacttcatc 157
               ||||||||||||||||||||
Sbjct: 2863846 atgccattgactacttcatc 2863827

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>emb|CT025738.5| Mouse DNA sequence from clone RP24-378G24 on chromosome 12, complete
              sequence
          Length = 182200

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    tgtaaatatatcatcatcac 530
              ||||||||||||||||||||
Sbjct: 150192 tgtaaatatatcatcatcac 150211

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>gb|AC120163.10| Mus musculus chromosome 15, clone RP24-466O11, complete sequence
          Length = 129237

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   ttgcttgtctgatttccctg 457
             ||||||||||||||||||||
Sbjct: 97675 ttgcttgtctgatttccctg 97656

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>dbj|AP001330.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1410C5
          Length = 163255

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   atgtccccctgccaacagca 389
             ||||||||||||||||||||
Sbjct: 93007 atgtccccctgccaacagca 92988


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,610,670
Number of Sequences: 3902068
Number of extensions: 6610670
Number of successful extensions: 139405
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139116
Number of HSP's gapped (non-prelim): 284
length of query: 696
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 673
effective length of database: 17,143,297,704
effective search space: 11537439354792
effective search space used: 11537439354792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result