ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35a22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467632.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2338 Score = 553 bits (279), Expect = e-154 Identities = 494/566 (87%) Strand = Plus / Minus Query: 162 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 221 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2077 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 2018 Query: 222 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 281 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 2017 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 1958 Query: 282 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 341 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 1957 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 1898 Query: 342 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 401 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 1897 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 1838 Query: 402 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 461 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 1837 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 1778 Query: 462 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtgataatattcctgc 521 | |||||| | ||||||||||| ||||||||||||| |||||||| | |||||||| Sbjct: 1777 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtgcgaggattcctgc 1718 Query: 522 ccggaccgcgcggaccttgtttgcctggtatatgcatagattgaacagagctgttgctgc 581 || || || |||||||||||||| ||||||||||||| |||||||| ||||||||||| Sbjct: 1717 tcgaactgcacggaccttgtttgcttggtatatgcataagttgaacagtgctgttgctgc 1658 Query: 582 atcttttctacctcttgaactgccactcttcagcaactcaaccaatgcttcaatcgcccc 641 |||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 1657 atcttttctaccccttggactgccactctgcagcaactcaactaatgcttcaattgcccc 1598 Query: 642 gggggtgcttcctatcattatcttgttatcatcgattagtgacaagctgaaaatagctgc 701 || |||||||| || |||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1597 tggagtgcttccaatagttatcttgttatcatcaataagtgacaagctgaaaatagctgc 1538 Query: 702 agctgcattttctcttgcctncatgc 727 |||||||||||||||||||| ||||| Sbjct: 1537 agctgcattttctcttgcctccatgc 1512
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 553 bits (279), Expect = e-154 Identities = 494/566 (87%) Strand = Plus / Minus Query: 162 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 221 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 30540647 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 30540588 Query: 222 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 281 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 30540587 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 30540528 Query: 282 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 341 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 30540527 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 30540468 Query: 342 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 401 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 30540467 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 30540408 Query: 402 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 461 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 30540407 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 30540348 Query: 462 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtgataatattcctgc 521 | |||||| | ||||||||||| ||||||||||||| |||||||| | |||||||| Sbjct: 30540347 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtgcgaggattcctgc 30540288 Query: 522 ccggaccgcgcggaccttgtttgcctggtatatgcatagattgaacagagctgttgctgc 581 || || || |||||||||||||| ||||||||||||| |||||||| ||||||||||| Sbjct: 30540287 tcgaactgcacggaccttgtttgcttggtatatgcataagttgaacagtgctgttgctgc 30540228 Query: 582 atcttttctacctcttgaactgccactcttcagcaactcaaccaatgcttcaatcgcccc 641 |||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 30540227 atcttttctaccccttggactgccactctgcagcaactcaactaatgcttcaattgcccc 30540168 Query: 642 gggggtgcttcctatcattatcttgttatcatcgattagtgacaagctgaaaatagctgc 701 || |||||||| || |||||||||||||||| || ||||||||||||||||||||||| Sbjct: 30540167 tggagtgcttccaatagttatcttgttatcatcaataagtgacaagctgaaaatagctgc 30540108 Query: 702 agctgcattttctcttgcctncatgc 727 |||||||||||||||||||| ||||| Sbjct: 30540107 agctgcattttctcttgcctccatgc 30540082
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 553 bits (279), Expect = e-154 Identities = 494/566 (87%) Strand = Plus / Minus Query: 162 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 221 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 52655 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 52596 Query: 222 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 281 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 52595 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 52536 Query: 282 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 341 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 52535 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 52476 Query: 342 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 401 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 52475 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 52416 Query: 402 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 461 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 52415 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 52356 Query: 462 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtgataatattcctgc 521 | |||||| | ||||||||||| ||||||||||||| |||||||| | |||||||| Sbjct: 52355 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtgcgaggattcctgc 52296 Query: 522 ccggaccgcgcggaccttgtttgcctggtatatgcatagattgaacagagctgttgctgc 581 || || || |||||||||||||| ||||||||||||| |||||||| ||||||||||| Sbjct: 52295 tcgaactgcacggaccttgtttgcttggtatatgcataagttgaacagtgctgttgctgc 52236 Query: 582 atcttttctacctcttgaactgccactcttcagcaactcaaccaatgcttcaatcgcccc 641 |||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 52235 atcttttctaccccttggactgccactctgcagcaactcaactaatgcttcaattgcccc 52176 Query: 642 gggggtgcttcctatcattatcttgttatcatcgattagtgacaagctgaaaatagctgc 701 || |||||||| || |||||||||||||||| || ||||||||||||||||||||||| Sbjct: 52175 tggagtgcttccaatagttatcttgttatcatcaataagtgacaagctgaaaatagctgc 52116 Query: 702 agctgcattttctcttgcctncatgc 727 |||||||||||||||||||| ||||| Sbjct: 52115 agctgcattttctcttgcctccatgc 52090
>dbj|AK102091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082P22, full insert sequence Length = 2339 Score = 553 bits (279), Expect = e-154 Identities = 494/566 (87%) Strand = Plus / Minus Query: 162 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 221 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2077 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 2018 Query: 222 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 281 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 2017 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 1958 Query: 282 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 341 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 1957 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 1898 Query: 342 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 401 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 1897 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 1838 Query: 402 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 461 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 1837 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 1778 Query: 462 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtgataatattcctgc 521 | |||||| | ||||||||||| ||||||||||||| |||||||| | |||||||| Sbjct: 1777 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtgcgaggattcctgc 1718 Query: 522 ccggaccgcgcggaccttgtttgcctggtatatgcatagattgaacagagctgttgctgc 581 || || || |||||||||||||| ||||||||||||| |||||||| ||||||||||| Sbjct: 1717 tcgaactgcacggaccttgtttgcttggtatatgcataagttgaacagtgctgttgctgc 1658 Query: 582 atcttttctacctcttgaactgccactcttcagcaactcaaccaatgcttcaatcgcccc 641 |||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||||| Sbjct: 1657 atcttttctaccccttggactgccactctgcagcaactcaactaatgcttcaattgcccc 1598 Query: 642 gggggtgcttcctatcattatcttgttatcatcgattagtgacaagctgaaaatagctgc 701 || |||||||| || |||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1597 tggagtgcttccaatagttatcttgttatcatcaataagtgacaagctgaaaatagctgc 1538 Query: 702 agctgcattttctcttgcctncatgc 727 |||||||||||||||||||| ||||| Sbjct: 1537 agctgcattttctcttgcctccatgc 1512
>gb|BC079699.1| Xenopus laevis cDNA clone IMAGE:5515537, partial cds Length = 2947 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2766 ctgcagctgcattttctcttg 2746
>gb|BC047253.1| Xenopus laevis nonmuscle myosin II heavy chain A, mRNA (cDNA clone IMAGE:5570568), partial cds Length = 3873 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2781 ctgcagctgcattttctcttg 2761
>gb|BC060471.1| Xenopus laevis nonmuscle myosin II heavy chain A, mRNA (cDNA clone IMAGE:4032649), partial cds Length = 2963 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2797 ctgcagctgcattttctcttg 2777
>gb|BC057729.1| Xenopus laevis hypothetical protein LOC398719, mRNA (cDNA clone IMAGE:4889191), partial cds Length = 2933 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2767 ctgcagctgcattttctcttg 2747
>emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in linkage group 20 Contains the gene for a novel protein similar to vertebrate dermatopontin (DPT), the atp1b1a gene for ATPase, Na+/K+ transporting, beta 1a polypeptide, the gene for a novel protein containing a homocysteine S-methyltransferase domain, the bivm gene for basic, immunoglobulin-like variable motif containing, the 5' end of the gene for a novel zinc finger protein (wu:fc06h02), the ndpkz4 gene for nucleoside diphosphate kinase-Z4 and the gene for a novel protein containing an inosine-uridine preferring nucleoside hydrolase doamin, complete sequence Length = 162005 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgaacagagctgttgctgcat 583 ||||||||||||||||||||| Sbjct: 109318 tgaacagagctgttgctgcat 109338
>gb|BC097535.1| Xenopus laevis cDNA clone IMAGE:5512687, partial cds Length = 2952 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2786 ctgcagctgcattttctcttg 2766
>gb|AF055895.1|AF055895 Xenopus laevis nonmuscle myosin II heavy chain A mRNA, complete cds Length = 6974 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2746 ctgcagctgcattttctcttg 2726
>gb|BC110971.1| Xenopus laevis cDNA clone IMAGE:4058308, partial cds Length = 3871 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 698 ctgcagctgcattttctcttg 718 ||||||||||||||||||||| Sbjct: 2779 ctgcagctgcattttctcttg 2759 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,650,526 Number of Sequences: 3902068 Number of extensions: 5650526 Number of successful extensions: 99713 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99676 Number of HSP's gapped (non-prelim): 37 length of query: 731 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 708 effective length of database: 17,143,297,704 effective search space: 12137454774432 effective search space used: 12137454774432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
