ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35a20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 5e-29
2dbj|AK062175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 5e-29
3ref|NM_183848.1| Oryza sativa (japonica cultivar-group), predic... 129 1e-26
4gb|AY111737.1| Zea mays CL39761_1 mRNA sequence 107 4e-20
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
7emb|BX571697.3| Zebrafish DNA sequence from clone DKEY-201M8 in ... 42 2.1
8gb|AC109443.2| Homo sapiens chromosome 5 clone CTD-2070B15, comp... 42 2.1
9gb|AC021082.4|AC021082 Homo sapiens chromosome 5 clone CTC-431D1... 42 2.1
10gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y,... 42 2.1
11ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.1
12gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 42 2.1
13gb|AC134573.5| Mus musculus BAC clone RP23-460N10 from chromosom... 40 8.5
14gb|AC168278.2| Mus musculus BAC RP24-83C9 (Roswell Park Cancer ... 40 8.5
15ref|XM_001001482.1| PREDICTED: Mus musculus similar to vomeronas... 40 8.5
16emb|AL596269.6| Human DNA sequence from clone RP11-29E12 on chro... 40 8.5
17emb|AL161420.10| Human DNA sequence from clone RP11-155N3 on chr... 40 8.5
18gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, comple... 40 8.5
19gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, r... 40 8.5
20gb|AC139887.3| Homo sapiens BAC clone RP11-440L14 from 4, comple... 40 8.5
21gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Canc... 40 8.5
22gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 ... 40 8.5
23gb|AC004439.1|AC004439 Drosophila melanogaster DNA sequence (P1 ... 40 8.5
24gb|AC142263.3| Mus musculus BAC clone RP24-449M10 from 12, compl... 40 8.5 
>dbj|AK101813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066P16, full
            insert sequence
          Length = 1754

 Score =  137 bits (69), Expect = 5e-29
 Identities = 192/233 (82%)
 Strand = Plus / Minus

                                                                        
Query: 391  cagaagccaaaaggctcattgttctggtttcacagaaagtctctttatcagctcgtacgt 450
            |||||||||||||||||||   || || || || || || |||||||| |||||||| ||
Sbjct: 1270 cagaagccaaaaggctcatcactccggcttgacggagagcctctttattagctcgtaagt 1211

                                                                        
Query: 451  gacaatcattgatgtaccccaaagagacatgttaagaaagcgtggtccaaaccctcggta 510
             |||||||| ||||||||||| || |||||||| ||||| || ||||||||||| | |||
Sbjct: 1210 tacaatcatggatgtaccccacagggacatgttgagaaaccgcggtccaaaccccctgta 1151

                                                                        
Query: 511  taaacctctccagccatcctctcgcaggagcagcctggtagtcttcatgacggatggcct 570
             ||||||||||||||||| ||    || |||| |||||| || |||||||| ||||||||
Sbjct: 1150 gaaacctctccagccatcttcctctagcagcaccctggtggttttcatgacagatggcct 1091

                                                                 
Query: 571  tccactcccgtagttgtccattacctgaagccgggtcttgatggtatctattg 623
             || || || ||||| ||||| |||||||| || ||||| |||||||| ||||
Sbjct: 1090 gcccctaccatagttatccatcacctgaagtcgtgtcttaatggtatcgattg 1038
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>dbj|AK062175.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C12, full
           insert sequence
          Length = 1331

 Score =  137 bits (69), Expect = 5e-29
 Identities = 192/233 (82%)
 Strand = Plus / Minus

                                                                       
Query: 391 cagaagccaaaaggctcattgttctggtttcacagaaagtctctttatcagctcgtacgt 450
           |||||||||||||||||||   || || || || || || |||||||| |||||||| ||
Sbjct: 847 cagaagccaaaaggctcatcactccggcttgacggagagcctctttattagctcgtaagt 788

                                                                       
Query: 451 gacaatcattgatgtaccccaaagagacatgttaagaaagcgtggtccaaaccctcggta 510
            |||||||| ||||||||||| || |||||||| ||||| || ||||||||||| | |||
Sbjct: 787 tacaatcatggatgtaccccacagggacatgttgagaaaccgcggtccaaaccccctgta 728

                                                                       
Query: 511 taaacctctccagccatcctctcgcaggagcagcctggtagtcttcatgacggatggcct 570
            ||||||||||||||||| ||    || |||| |||||| || |||||||| ||||||||
Sbjct: 727 gaaacctctccagccatcttcctctagcagcaccctggtggttttcatgacagatggcct 668

                                                                
Query: 571 tccactcccgtagttgtccattacctgaagccgggtcttgatggtatctattg 623
            || || || ||||| ||||| |||||||| || ||||| |||||||| ||||
Sbjct: 667 gcccctaccatagttatccatcacctgaagtcgtgtcttaatggtatcgattg 615
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>ref|NM_183848.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score =  129 bits (65), Expect = 1e-26
 Identities = 161/193 (83%)
 Strand = Plus / Minus

                                                                       
Query: 431 ctctttatcagctcgtacgtgacaatcattgatgtaccccaaagagacatgttaagaaag 490
           |||||||| |||||||| || |||||||| ||||||||||| || |||||||| ||||| 
Sbjct: 824 ctctttattagctcgtaagttacaatcatggatgtaccccacagggacatgttgagaaac 765

                                                                       
Query: 491 cgtggtccaaaccctcggtataaacctctccagccatcctctcgcaggagcagcctggta 550
           || ||||||||||| | ||| ||||||||||||||||| ||    || |||| |||||| 
Sbjct: 764 cgcggtccaaaccccctgtagaaacctctccagccatcttcctctagcagcaccctggtg 705

                                                                       
Query: 551 gtcttcatgacggatggccttccactcccgtagttgtccattacctgaagccgggtcttg 610
           || |||||||| |||||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 704 gttttcatgacagatggcctgcccctaccatagttatccatcacctgaagtcgtgtctta 645

                        
Query: 611 atggtatctattg 623
           |||||||| ||||
Sbjct: 644 atggtatcgattg 632
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>gb|AY111737.1| Zea mays CL39761_1 mRNA sequence
          Length = 717

 Score =  107 bits (54), Expect = 4e-20
 Identities = 166/205 (80%)
 Strand = Plus / Plus

                                                                       
Query: 419 ttcacagaaagtctctttatcagctcgtacgtgacaatcattgatgtaccccaaagagac 478
           |||||||| || |||||||| ||||| || || || ||||||||||| ||||| ||||||
Sbjct: 391 ttcacagatagcctctttatgagctcatatgtcacgatcattgatgtgccccagagagac 450

                                                                       
Query: 479 atgttaagaaagcgtggtccaaaccctcggtataaacctctccagccatcctctcgcagg 538
           ||||||||||| |  |||||||| ||||  || ||     ||||| |||| ||    || 
Sbjct: 451 atgttaagaaacctgggtccaaaacctctataaaannnnntccaggcatcttcatcaagc 510

                                                                       
Query: 539 agcagcctggtagtcttcatgacggatggccttccactcccgtagttgtccattacctga 598
           |||||||||||||| |||||||| || ||||| ||| | || ||||||||||| ||||||
Sbjct: 511 agcagcctggtagttttcatgacagaaggcctaccattgccatagttgtccataacctga 570

                                    
Query: 599 agccgggtcttgatggtatctattg 623
           ||||  |||||||| ||||||||||
Sbjct: 571 agcctagtcttgattgtatctattg 595
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 2e-19
 Identities = 137/165 (83%)
 Strand = Plus / Plus

                                                                            
Query: 435      ttatcagctcgtacgtgacaatcattgatgtaccccaaagagacatgttaagaaagcgtg 494
                |||| |||||||| || |||||||| ||||||||||| || |||||||| ||||| || |
Sbjct: 12688236 ttattagctcgtaagttacaatcatggatgtaccccacagggacatgttgagaaaccgcg 12688295

                                                                            
Query: 495      gtccaaaccctcggtataaacctctccagccatcctctcgcaggagcagcctggtagtct 554
                |||||||||| | ||| ||||||||||||||||| ||    || |||| |||||| || |
Sbjct: 12688296 gtccaaaccccctgtagaaacctctccagccatcttcctctagcagcaccctggtggttt 12688355

                                                             
Query: 555      tcatgacggatggccttccactcccgtagttgtccattacctgaa 599
                ||||||| |||||||| || || || ||||| ||||| |||||||
Sbjct: 12688356 tcatgacagatggcctgcccctaccatagttatccatcacctgaa 12688400
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0554D10
          Length = 158723

 Score =  105 bits (53), Expect = 2e-19
 Identities = 137/165 (83%)
 Strand = Plus / Plus

                                                                         
Query: 435   ttatcagctcgtacgtgacaatcattgatgtaccccaaagagacatgttaagaaagcgtg 494
             |||| |||||||| || |||||||| ||||||||||| || |||||||| ||||| || |
Sbjct: 55265 ttattagctcgtaagttacaatcatggatgtaccccacagggacatgttgagaaaccgcg 55324

                                                                         
Query: 495   gtccaaaccctcggtataaacctctccagccatcctctcgcaggagcagcctggtagtct 554
             |||||||||| | ||| ||||||||||||||||| ||    || |||| |||||| || |
Sbjct: 55325 gtccaaaccccctgtagaaacctctccagccatcttcctctagcagcaccctggtggttt 55384

                                                          
Query: 555   tcatgacggatggccttccactcccgtagttgtccattacctgaa 599
             ||||||| |||||||| || || || ||||| ||||| |||||||
Sbjct: 55385 tcatgacagatggcctgcccctaccatagttatccatcacctgaa 55429
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>emb|BX571697.3| Zebrafish DNA sequence from clone DKEY-201M8 in linkage group 6,
             complete sequence
          Length = 83282

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 423   cagaaagtctctttatcagct 443
             |||||||||||||||||||||
Sbjct: 61120 cagaaagtctctttatcagct 61100
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>gb|AC109443.2| Homo sapiens chromosome 5 clone CTD-2070B15, complete sequence
          Length = 123037

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 224   tcagcacttggaagtatttacatgc 248
             |||| ||||||||||||||||||||
Sbjct: 99313 tcagaacttggaagtatttacatgc 99337
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>gb|AC021082.4|AC021082 Homo sapiens chromosome 5 clone CTC-431D1, complete sequence
          Length = 118645

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 224   tcagcacttggaagtatttacatgc 248
             |||| ||||||||||||||||||||
Sbjct: 81849 tcagaacttggaagtatttacatgc 81825
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>gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y, complete sequence
          Length = 187894

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    atgggaagacacaaaactctc 48
             |||||||||||||||||||||
Sbjct: 15785 atgggaagacacaaaactctc 15805
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
              (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     atgggaagacacaaaactctc 48
              |||||||||||||||||||||
Sbjct: 467186 atgggaagacacaaaactctc 467206
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   ctcatccggaaacgatcaccc 222
             |||||||||||||||||||||
Sbjct: 99186 ctcatccggaaacgatcaccc 99166
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>gb|AC134573.5| Mus musculus BAC clone RP23-460N10 from chromosome 7, complete sequence
          Length = 177808

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    ccaaagagacatgttaagaa 488
              ||||||||||||||||||||
Sbjct: 141942 ccaaagagacatgttaagaa 141961
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>gb|AC168278.2| Mus musculus  BAC RP24-83C9 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 247493

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tcaatccctgtaccaaaaag 343
             ||||||||||||||||||||
Sbjct: 73163 tcaatccctgtaccaaaaag 73182
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>ref|XM_001001482.1| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 4
           (LOC672807), mRNA
          Length = 627

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 469 ccaaagagacatgttaagaa 488
           ||||||||||||||||||||
Sbjct: 537 ccaaagagacatgttaagaa 518
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>emb|AL596269.6| Human DNA sequence from clone RP11-29E12 on chromosome 1 Contains part
             of the ELTD1 gene for EGF latrophilin and seven
             transmembrane domain containing 1, complete sequence
          Length = 101427

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   atccctgtaccaaaaagaaa 346
             ||||||||||||||||||||
Sbjct: 80402 atccctgtaccaaaaagaaa 80383
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>emb|AL161420.10| Human DNA sequence from clone RP11-155N3 on chromosome 13 Contains the
             3' end of the gene for zizimin1 (KIAA1058) and a novel
             gene, complete sequence
          Length = 163316

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    cagatcaagcctctgactct 111
             ||||||||||||||||||||
Sbjct: 13144 cagatcaagcctctgactct 13125
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>gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, complete sequence
          Length = 219357

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    gtagttgtccattacctgaa 599
              ||||||||||||||||||||
Sbjct: 186290 gtagttgtccattacctgaa 186309
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>gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, region 22A-22C, BAC clone
             BACR16D07, complete sequence
          Length = 170868

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   atggccaaaacggaaatgag 374
             ||||||||||||||||||||
Sbjct: 10008 atggccaaaacggaaatgag 9989
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>gb|AC139887.3| Homo sapiens BAC clone RP11-440L14 from 4, complete sequence
          Length = 186774

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   gtagttgtccattacctgaa 599
             ||||||||||||||||||||
Sbjct: 58974 gtagttgtccattacctgaa 58993
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>gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 146781

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   tcaatccctgtaccaaaaag 343
             ||||||||||||||||||||
Sbjct: 32786 tcaatccctgtaccaaaaag 32767
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>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
             sequence
          Length = 306696

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   atggccaaaacggaaatgag 374
             ||||||||||||||||||||
Sbjct: 82879 atggccaaaacggaaatgag 82860
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>gb|AC004439.1|AC004439 Drosophila melanogaster DNA sequence (P1 DS08613 (D65)), complete
             sequence
          Length = 84055

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   atggccaaaacggaaatgag 374
             ||||||||||||||||||||
Sbjct: 21763 atggccaaaacggaaatgag 21744
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>gb|AC142263.3| Mus musculus BAC clone RP24-449M10 from 12, complete sequence
          Length = 182060

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    tatgttaacttagatgggaagaca 38
             ||||||||||||||||| ||||||
Sbjct: 37380 tatgttaacttagatggtaagaca 37357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,012,331
Number of Sequences: 3902068
Number of extensions: 5012331
Number of successful extensions: 82716
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82618
Number of HSP's gapped (non-prelim): 96
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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