ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
2dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
3dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
4emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 i... 46 0.16
5emb|AL031776.7|HS312L17 Human DNA sequence from clone RP1-312L17... 44 0.65
6emb|BX649299.5| Zebrafish DNA sequence from clone CH211-209E14 i... 44 0.65
7ref|NM_184307.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.6
8gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 42 2.6
9gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 42 2.6
10gb|AC013564.7| Homo sapiens chromosome 15, clone RP11-321F6, com... 42 2.6
11gb|AC090016.11| Homo sapiens 12q BAC RP11-730K16 (Roswell Park C... 42 2.6
12gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 2.6
13gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; put... 42 2.6
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
15gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 42 2.6
16dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
17gb|AC158663.2| Mus musculus BAC RP23-16J8 (Roswell Park Cancer ... 42 2.6
18emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chro... 42 2.6 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                           
Query: 666     attgaaggttgatacaatgactgcatattctcctttggttatagggatgtatatgttctc 725
               |||||| || |||||||| || ||| ||||||||||||||||||||||||| || |||||
Sbjct: 2406395 attgaaagtcgatacaatcacagcaaattctcctttggttatagggatgtaaatattctc 2406336

                  
Query: 726     atc 728
               |||
Sbjct: 2406335 atc 2406333



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 619     atagaatttgtaaacgtgctccagcccat 647
               |||||||||||||| ||||||||||||||
Sbjct: 2406791 atagaatttgtaaatgtgctccagcccat 2406763
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>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0036F10
          Length = 149415

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 666   attgaaggttgatacaatgactgcatattctcctttggttatagggatgtatatgttctc 725
             |||||| || |||||||| || ||| ||||||||||||||||||||||||| || |||||
Sbjct: 37853 attgaaagtcgatacaatcacagcaaattctcctttggttatagggatgtaaatattctc 37794

                
Query: 726   atc 728
             |||
Sbjct: 37793 atc 37791



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 619   atagaatttgtaaacgtgctccagcccat 647
             |||||||||||||| ||||||||||||||
Sbjct: 38249 atagaatttgtaaatgtgctccagcccat 38221
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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0007O20
          Length = 147363

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                          
Query: 666    attgaaggttgatacaatgactgcatattctcctttggttatagggatgtatatgttctc 725
              |||||| || |||||||| || ||| ||||||||||||||||||||||||| || |||||
Sbjct: 128196 attgaaagtcgatacaatcacagcaaattctcctttggttatagggatgtaaatattctc 128137

                 
Query: 726    atc 728
              |||
Sbjct: 128136 atc 128134



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 619    atagaatttgtaaacgtgctccagcccat 647
              |||||||||||||| ||||||||||||||
Sbjct: 128592 atagaatttgtaaatgtgctccagcccat 128564
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>emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 in linkage group 11,
             complete sequence
          Length = 147098

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 446   accaaaatattttccaaacagca 468
             |||||||||||||||||||||||
Sbjct: 96319 accaaaatattttccaaacagca 96341
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>emb|AL031776.7|HS312L17 Human DNA sequence from clone RP1-312L17 on chromosome 6q22.2-23.1
             Contains the 5' end of the FLJ14440 gene for
             thrombospondin and a CpG island, complete sequence
          Length = 108208

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                               
Query: 394   aacccaatatatcatttcctaactaaaccagaga 427
             |||||||||||||| |||||||||||| ||||||
Sbjct: 22300 aacccaatatatca-ttcctaactaaatcagaga 22268
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>emb|BX649299.5| Zebrafish DNA sequence from clone CH211-209E14 in linkage group 20,
             complete sequence
          Length = 199740

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 181   cctccaagcaaaaatgctacagtaag 206
             |||||||||||||||| |||||||||
Sbjct: 45153 cctccaagcaaaaatgttacagtaag 45128
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>ref|NM_184307.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 378

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 540 cgtcgtcattcttcaccttcg 560
           |||||||||||||||||||||
Sbjct: 322 cgtcgtcattcttcaccttcg 302
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>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete sequence
          Length = 185081

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 447    ccaaaatattttccaaacagcactt 471
              |||||||||||||||||||| ||||
Sbjct: 139565 ccaaaatattttccaaacagtactt 139589
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>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224687

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 447   ccaaaatattttccaaacagcactt 471
             |||||||||||||||||||| ||||
Sbjct: 60700 ccaaaatattttccaaacagtactt 60676
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>gb|AC013564.7| Homo sapiens chromosome 15, clone RP11-321F6, complete sequence
          Length = 210133

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 487    ctggaaggaactccaccaaaa 507
              |||||||||||||||||||||
Sbjct: 118021 ctggaaggaactccaccaaaa 118041
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>gb|AC090016.11| Homo sapiens 12q BAC RP11-730K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 121817

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 487   ctggaaggaactccaccaaaa 507
             |||||||||||||||||||||
Sbjct: 56804 ctggaaggaactccaccaaaa 56784
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>gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-219K14, complete
             sequence
          Length = 223678

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 447   ccaaaatattttccaaacagcactt 471
             |||||||||||||||||||| ||||
Sbjct: 13390 ccaaaatattttccaaacagtactt 13414
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>gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; putative ankyrin-related protein
              and cystic fibrosis transmembrane conductance regulator
              (CFTR) genes, complete cds; and unknown gene
          Length = 357856

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 447    ccaaaatattttccaaacagcactt 471
              |||||||||||||||||||| ||||
Sbjct: 324673 ccaaaatattttccaaacagtactt 324697
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 540     cgtcgtcattcttcaccttcg 560
               |||||||||||||||||||||
Sbjct: 2224004 cgtcgtcattcttcaccttcg 2223984
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 447     ccaaaatattttccaaacagcactt 471
               |||||||||||||||||||| ||||
Sbjct: 1472737 ccaaaatattttccaaacagtactt 1472761
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>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0019D06
          Length = 167405

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 540  cgtcgtcattcttcaccttcg 560
            |||||||||||||||||||||
Sbjct: 7588 cgtcgtcattcttcaccttcg 7568
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>gb|AC158663.2| Mus musculus  BAC RP23-16J8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 216101

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 447    ccaaaatattttccaaacagcactt 471
              |||||||||||||||||||| ||||
Sbjct: 129488 ccaaaatattttccaaacagtactt 129512
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>emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chromosome 4, complete
             sequence
          Length = 228767

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 455   ttttccaaacagcacttccaa 475
             |||||||||||||||||||||
Sbjct: 92961 ttttccaaacagcacttccaa 92941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,631,716
Number of Sequences: 3902068
Number of extensions: 7631716
Number of successful extensions: 132619
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 132493
Number of HSP's gapped (non-prelim): 126
length of query: 738
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 715
effective length of database: 17,143,297,704
effective search space: 12257457858360
effective search space used: 12257457858360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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