ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLK12_HUMAN (Q9UKR0) Kallikrein-12 precursor (EC 3.4.21.-) (Kall... 31 3.9
2HBA_TRIOC (P19832) Hemoglobin alpha-A subunit (Hemoglobin alpha-... 30 5.1
3HBA_AEGMO (P07417) Hemoglobin alpha-A subunit (Hemoglobin alpha-... 30 5.1
4Y2078_MYCTU (Q10686) Hypothetical protein Rv2078/MT2139 30 8.7
5HBA_ACCGE (P08850) Hemoglobin alpha-A subunit (Hemoglobin alpha-... 30 8.7
6DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding moti... 30 8.7

>KLK12_HUMAN (Q9UKR0) Kallikrein-12 precursor (EC 3.4.21.-) (Kallikrein-like|
           protein 5) (KLK-L5)
          Length = 248

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -3

Query: 550 LRQGTHVSFTVCSWTGRVKVQDAVVTEFHLGYDGGAW---YQVSTDQSRMPIRVSITPHG 380
           +R G H S +   WT +++     VT  H GY G +    + +   + R+P+RV+ +   
Sbjct: 70  VRLGEH-SLSQLDWTEQIRHSGFSVT--HPGYLGASTSHEHDLRLLRLRLPVRVTSSVQP 126

Query: 379 HPLKDHCPTAG 347
            PL + C TAG
Sbjct: 127 LPLPNDCATAG 137



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>HBA_TRIOC (P19832) Hemoglobin alpha-A subunit (Hemoglobin alpha-A chain)|
           (Alpha-A-globin)
          Length = 141

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +2

Query: 407 GHARLVGAHLVPRPAVV--PEVELRHHGVLHLHASSPRAHGERNVGALAE------QVAG 562
           GHA   GA  + R  +   P      H  LH  ++  +AHG++ VGAL E       +AG
Sbjct: 19  GHAEDYGAETLERMFITYPPTKTYFPHFDLHHGSAQIKAHGKKVVGALIEAVNHIDDIAG 78

Query: 563 AVEELA 580
           A+ +L+
Sbjct: 79  ALSKLS 84



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>HBA_AEGMO (P07417) Hemoglobin alpha-A subunit (Hemoglobin alpha-A chain)|
           (Alpha-A-globin)
          Length = 141

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +2

Query: 407 GHARLVGAHLVPRPAVV--PEVELRHHGVLHLHASSPRAHGERNVGALAE------QVAG 562
           GHA   GA  + R  +   P      H  LH  ++  +AHG++ VGAL E       +AG
Sbjct: 19  GHAEDYGAETLERMFITYPPTKTYFPHFDLHHGSAQIKAHGKKVVGALIEAVNHIDDIAG 78

Query: 563 AVEELA 580
           A+ +L+
Sbjct: 79  ALSKLS 84



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>Y2078_MYCTU (Q10686) Hypothetical protein Rv2078/MT2139|
          Length = 104

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 461 EVELRHHGVLHLHASSPRAHGERNVGALAEQVAGAVEELAVGQRL-DAEGEVLAAQV--L 631
           +VEL H G    H +   AHG  +  +    ++G      V Q   DA G   A Q+  L
Sbjct: 4   DVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQMRNL 63

Query: 632 HRHVAARLTV 661
           H H  A +TV
Sbjct: 64  HAHRQALITV 73



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>HBA_ACCGE (P08850) Hemoglobin alpha-A subunit (Hemoglobin alpha-A chain)|
           (Alpha-A-globin)
          Length = 141

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +2

Query: 407 GHARLVGAHLVPRPAVV--PEVELRHHGVLHLHASSPRAHGERNVGALAE------QVAG 562
           GHA   GA  + R      P      H  LH  ++  +AHG++ VGAL E       +AG
Sbjct: 19  GHAEEYGAETLERMFTTYPPTKTYFPHFDLHHGSAQIKAHGKKVVGALIEAVNHIDDIAG 78

Query: 563 AVEELA 580
           A+ +L+
Sbjct: 79  ALSKLS 84



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>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,|
           single-stranded interacting protein 4)
          Length = 353

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 391 TPHGHPLKDHCPTAGCTSGGKCFEHSVPG 305
           T H HPL+  CP   C S  KC E SV G
Sbjct: 117 TLHNHPLRPSCPLLVCRSTEKC-ELSVDG 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,769,273
Number of Sequences: 219361
Number of extensions: 1505723
Number of successful extensions: 5010
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5009
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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