ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34l04 |
|---|---|
| Clone Library Name | barley_pub |
>RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 60.1 bits (144), Expect = 6e-09 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L +++YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHAADIERFRDIGNPISTIVAELLDFFFEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P + T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPEIFTTVERWVGVETQGKYTQGMTVVD-----YYFLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ +RL Sbjct: 301 DLLAERL 307
>RIHA_SALPA (Q5PM78) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 60.1 bits (144), Expect = 6e-09 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+N+TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLNVTHKAQIHAADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P + T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPEIFTTVERWVGVETQGKYTQGMTVVD-----YYFLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ +RL Sbjct: 301 DLLAERL 307
>RIHA_SHIFL (Q83LY1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P L T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPELFTTVERWVGVETQGKYTQGMTVVD-----YYYLTG--NKPNATVIVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ RL Sbjct: 301 DLLADRL 307
>RIHA_SALTY (Q8ZQY4) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 58.2 bits (139), Expect = 2e-08 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHAADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P + T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPEIFTTVERWVGVETQGKYTQGMTVVD-----YYFLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ +RL Sbjct: 301 DLLAERL 307
>RIHA_ECOLI (P41409) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P L T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPELFTSVERWVGVETQGKYTQGMTVVD-----YYYLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ RL Sbjct: 301 DLLADRL 307
>RIHA_ECOL6 (Q8FJY8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P L T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPELFTTVERWVGVETQGKYTQGMTVVD-----YYYLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ RL Sbjct: 301 DLLADRL 307
>RIHA_ECO57 (Q8XBL8) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P L T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPELFTTVERWVGVETQGKYTQGMTVVD-----YYYLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ RL Sbjct: 301 DLLADRL 307
>RIHA_SHISS (Q3Z4E1) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 56.6 bits (135), Expect = 6e-08 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L + +YH D + G LHDP T+ Sbjct: 188 GLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P L T E V V+T G ++G+TV D Y +T KP V V VD V Sbjct: 248 LLKPELFTTVERWVGVETQGKYSQGMTVVD-----YYYLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ RL Sbjct: 301 DLLADRL 307
>RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 56.6 bits (135), Expect = 6e-08 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D ++ + + ++++L +++YH D + G LH P T+ Sbjct: 188 GLDVTHKAQIHAADIERFRDIGNPISTIVAELLDFFFEYHKDEKWGFVGAPLHAPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 + P + T E V V+T G T+G+TV D Y +T KP V V VD V Sbjct: 248 LLKPEIFTTVERWVGVETKGKYTQGMTVVD-----YYFLTG--NKPNATVMVDVDRQGFV 300 Query: 284 ELIMQRL 264 +L+ +RL Sbjct: 301 DLLAERL 307
>RIHA_PHOPR (Q6LQG2) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 310 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 2/127 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++TH+ + D D +K+ + ++ A+ +++L + YH D + G LHDP T+ Sbjct: 188 GLDVTHRAQIMDEDIEKIRKINNPVAQVTAELLDFFMIYHRDPKWGFEGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDGI-TKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVV 285 ++P L V ++T G T G+TV D + T I V V+ V Sbjct: 248 LLEPELFASINCWVGIETQGSHTLGMTVVDRYQLTDNPI-------NTTVLFDVNRQGFV 300 Query: 284 ELIMQRL 264 +L+ +RL Sbjct: 301 DLLAERL 307
>IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 313 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Frame = -1 Query: 641 IGINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLA 462 +G+++THQ + + +K++ + +K A ++ +IL Y + + T G +HDP + Sbjct: 188 VGLDLTHQALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYGK-VHDPCAVAY 246 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 375 +DP++MT V ++ +G +T G+TV D Sbjct: 247 VIDPTVMTTERVPVDIELNGALTTGMTVVD 276
>RIHA_SHEON (Q8EIM7) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 318 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLA 462 G+++THQ + D D +++ + A+ ++++L + YH D + G LHDP T+ Sbjct: 188 GLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPLHDPCTIAW 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKP-TVKVAVTVDAPAV 288 + P L + V ++T +T G+TV D + T GKP V ++ Sbjct: 248 LLKPELFDAQDCWVGIETQSELTLGMTVVDRYQLT--------GKPANATVLFGLNRQGF 299 Query: 287 VELIMQRL 264 V+L++ L Sbjct: 300 VDLLVHSL 307
>IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 314 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Frame = -1 Query: 641 IGINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLA 462 +G+++THQ + + +++++ D+ AR++ +I+ Y + +HDP + Sbjct: 188 VGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAY 247 Query: 461 AVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 375 +DPS+MT V ++ G +T G+TV D Sbjct: 248 VIDPSVMTTERVPVDIELTGKLTLGMTVAD 277
>YD62_SCHPO (Q10314) Hypothetical protein C17G8.02 in chromosome I| Length = 330 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Frame = -1 Query: 641 IGINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYST-TGVYLHDPTTLL 465 + +++TH+V+L + L Q + ++ L +++ ++ + + Y GV +HD + Sbjct: 204 VPLDVTHKVLLDANIIQLLRQHSNPFSSTLVELMTVFQQTYENVYGIRNGVPVHDVCAVA 263 Query: 464 AAVDPSLMTYTEGVVRVQTDGITKGLTVFD 375 A+ PSL T V V D +T G TV D Sbjct: 264 LALWPSLWTSRSMYVTVSLDSLTLGRTVCD 293
>RIHC_SALPA (Q5PKI2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 36.6 bits (83), Expect = 0.065 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAA 459 G+++T+Q +LS KL + K+L ++++ TGV +HD + Sbjct: 189 GLDVTNQAMLSPDFLNKLPALNRT-----GKMLHSLFNHYRSGSMRTGVRMHDLCAIAWL 243 Query: 458 VDPSLMTYTEGVVRVQTDG-ITKGLTVFD 375 V P L T V V+T G T G TV D Sbjct: 244 VRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SALTY (Q8ZRY7) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 36.6 bits (83), Expect = 0.065 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAA 459 G+++T+Q +LS KL + K+L ++++ TGV +HD + Sbjct: 189 GLDVTNQAMLSPDFLNKLPALNRT-----GKMLHSLFNHYRSGSMRTGVRMHDLCAIAWL 243 Query: 458 VDPSLMTYTEGVVRVQTDG-ITKGLTVFD 375 V P L T V V+T G T G TV D Sbjct: 244 VRPELFTLQSCFVAVETQGQYTAGTTVVD 272
>RIHC_SALTI (Q8Z9M9) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 36.6 bits (83), Expect = 0.065 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAA 459 G+++T+Q +LS KL + K+L ++++ TGV +HD + Sbjct: 189 GLDVTNQAMLSPDFLNKLPALNRT-----GKMLHSLFNHYRSGSMRTGVRMHDLCAIAWL 243 Query: 458 VDPSLMTYTEGVVRVQTDG-ITKGLTVFD 375 V P L T V V+T G T G TV D Sbjct: 244 VRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SALCH (Q57TL0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 36.6 bits (83), Expect = 0.065 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = -1 Query: 638 GINITHQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAA 459 G+++T+Q +LS KL + K+L ++++ TGV +HD + Sbjct: 189 GLDVTNQAMLSPDFLNKLPALNRT-----GKMLHSLFNHYRSGSMRTGVRMHDLCAIAWL 243 Query: 458 VDPSLMTYTEGVVRVQTDG-ITKGLTVFD 375 V P L T V V+T G T G TV D Sbjct: 244 VRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>OXAA_HELPJ (Q9ZJG8) Inner membrane protein oxaA| Length = 549 Score = 30.0 bits (66), Expect = 6.1 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = -1 Query: 617 VILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMT 438 V+L + D KK+E+ + K A+ + + + +D Y TT ++ DP A +D + T Sbjct: 233 VLLENTD-KKIEKIEDKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIGT 291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,273,083 Number of Sequences: 219361 Number of extensions: 1878985 Number of successful extensions: 4919 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4918 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
