ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19,... 42 0.40
2gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
4dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07,... 38 6.2
5dbj|AP001691.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 6.2
6gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thali... 38 6.2
7dbj|AP000948.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 6.2

>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence
          Length = 177660

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    aagcaaaaaataggaggcctt 110
             |||||||||||||||||||||
Sbjct: 62981 aagcaaaaaataggaggcctt 63001



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>gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093C16,
              complete sequence
          Length = 206612

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     caggctagacggccggtta 67
              |||||||||||||||||||
Sbjct: 102070 caggctagacggccggtta 102052



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 49      caggctagacggccggtta 67
               |||||||||||||||||||
Sbjct: 9871443 caggctagacggccggtta 9871425



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>dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07, map 22, complete
             sequences
          Length = 184809

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    ggacaagcaagcaaaaaatagga 104
             ||||||||||||| |||||||||
Sbjct: 60946 ggacaagcaagcataaaatagga 60968



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>dbj|AP001691.1| Homo sapiens genomic DNA, chromosome 21q, section 35/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 82     ggacaagcaagcaaaaaatagga 104
              ||||||||||||| |||||||||
Sbjct: 105102 ggacaagcaagcataaaatagga 105124



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>gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 110514

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 87    agcaagcaaaaaataggag 105
             |||||||||||||||||||
Sbjct: 32716 agcaagcaaaaaataggag 32734



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>dbj|AP000948.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B53P19,
            LL56-APP region, complete sequence
          Length = 79834

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 82   ggacaagcaagcaaaaaatagga 104
            ||||||||||||| |||||||||
Sbjct: 6922 ggacaagcaagcataaaatagga 6944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 750,785
Number of Sequences: 3902068
Number of extensions: 750785
Number of successful extensions: 58015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58000
Number of HSP's gapped (non-prelim): 15
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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