ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106519.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 4e-48
2dbj|AK101990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 4e-48
3ref|NM_188633.1| Oryza sativa (japonica cultivar-group), Ozsa823... 157 6e-35
4emb|AJ575226.1|OSA575226 Oryza sativa (japonica cultivar-group) ... 157 6e-35
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
7gb|AC146891.3| Dasypus novemcinctus clone VMRC5-364E4, complete ... 44 0.58
8emb|BX537306.5| Mouse DNA sequence from clone RP23-190K9 on chro... 44 0.58
9gb|AC140940.1| Gallus gallus BAC clone TAM32-30H10 from chromoso... 44 0.58
10gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 42 2.3
11gb|AC149302.1| Solanum demissum chromosome 11 clone PGEC400L14 m... 42 2.3
12gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6... 42 2.3
13gb|AC115005.11| Mus musculus chromosome 16, clone RP24-183G19, c... 42 2.3
14gb|AC010235.7| Homo sapiens chromosome 5 clone CTC-339D2, comple... 42 2.3
15gb|AC008546.6|AC008546 Homo sapiens chromosome 5 clone CTC-501K1... 42 2.3
16gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, comple... 42 2.3
17emb|AL627162.4| Zebrafish DNA sequence from clone XX-KT119 in li... 42 2.3
18emb|BX649405.13| Zebrafish DNA sequence from clone DKEY-190M16 i... 42 2.3
19gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 ma... 42 2.3
20emb|AL928650.5| Zebrafish DNA sequence from clone CH211-160D14 i... 42 2.3
21gb|AC132239.4| Mus musculus BAC clone RP24-534D4 from 13, comple... 42 2.3
22emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chro... 42 2.3
23emb|AL929252.6| Zebrafish DNA sequence from clone CH211-150G13 i... 42 2.3
24emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from... 42 2.3
25gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 9.1
26gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosom... 40 9.1
27gb|AC158156.10| Mus musculus chromosome 3, clone RP23-145F12, co... 40 9.1
28gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 9.1
29gb|AY484588.1| Musa acuminata clone MuG9, genomic sequence 40 9.1
30gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, com... 40 9.1
31emb|AJ829921.1| Xenopus laevis mRNA for FGF receptor-like protei... 40 9.1
32gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosom... 40 9.1
33gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complet... 40 9.1
34gb|AC101679.8| Mus musculus chromosome 17, clone RP23-173O19, co... 40 9.1
35gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosom... 40 9.1
36emb|AL513130.11| Human DNA sequence from clone RP11-572D5 on chr... 40 9.1
37emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on ch... 40 9.1
38gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 9.1
39gb|AC131310.3| Homo sapiens chromosome 15, clone RP11-150C6, com... 40 9.1
40gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome... 40 9.1
41dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 9.1
42dbj|AK150031.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 9.1
43gb|AC090812.5| Homo sapiens chromosome 18, clone RP11-59J7, comp... 40 9.1
44gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence 40 9.1
45gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, c... 40 9.1
46ref|XM_625966.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.1
47gb|AY623815.1| Ellobius lutescens forkhead transcription factor ... 40 9.1
48dbj|AK038950.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 9.1
49emb|BX548256.7| Zebrafish DNA sequence from clone DKEYP-75B4 in ... 40 9.1
50gb|AC011224.8|AC011224 Homo sapiens, clone RP11-10K20, complete ... 40 9.1
51gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, r... 40 9.1
52gb|AC132154.3| Homo sapiens BAC clone RP11-523J2 from 2, complet... 40 9.1
53gb|AC146659.3| Otolemur garnettii clone CH256-432E12, complete s... 40 9.1
54gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 9.1
55gb|AC127511.7| Homo sapiens chromosome 15, clone RP13-188P24, co... 40 9.1
56dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
57emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chro... 40 9.1
58dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
59dbj|AB117614.1| Xenopus laevis FGFRL1 mRNA for fibroblast growth... 40 9.1
60emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in... 40 9.1
61emb|BX276180.5| Zebrafish DNA sequence from clone CH211-284K10 i... 40 9.1
62gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45... 40 9.1
63gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromoso... 40 9.1
64emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 9.1
65emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chro... 40 9.1
66emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chr... 40 9.1
67gb|CP000036.1| Shigella boydii Sb227, complete genome 40 9.1
68gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 9.1 
>dbj|AK106519.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C06, full
            insert sequence
          Length = 2644

 Score =  200 bits (101), Expect = 4e-48
 Identities = 229/271 (84%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 321  tacttctttgaaccacgagctgctgcaaggtgatccgagacaaaatcaaaagctttagtt 380
            ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 2164 tacttttttgaaccacgagctgctgcaagatgatccgaaacaaaatcaaaagctttagtt 2105

                                                                        
Query: 381  tcatctttcttggaattgctcatcacagccacttgatgtggaggttgattacttgaattg 440
            ||||| ||||| || |||||||||||||| ||   |||| ||||||| ||||||||||||
Sbjct: 2104 tcatccttctttgagttgctcatcacagcaac---atgttgaggttggttacttgaattg 2048

                                                                        
Query: 441  aaaatatctggcatcccagatgcatttccgccactcattgaattgaaagccggatgccca 500
            || ||||| || | | |||||||||||||||   |||||| ||| |||| || ||| || 
Sbjct: 2047 aagatatcaggaagcacagatgcatttccgctgttcattgcattcaaagacgaatgtccc 1988

                                                                        
Query: 501  agtccagcactgaaatttcccaagttttgtagtaactgctgctgctgagcaagaagagct 560
            |  |||||| |||||||||| |  ||||| || | |||||||||||||||||||||  | 
Sbjct: 1987 aacccagcattgaaatttcctagattttgcagcagctgctgctgctgagcaagaaggaca 1928

                                           
Query: 561  tccatagcaccataatttaattgttgcccag 591
              |||||||||||| |||||||| |||||||
Sbjct: 1927 ctcatagcaccatagtttaattgctgcccag 1897
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>dbj|AK101990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079D23, full
            insert sequence
          Length = 2651

 Score =  200 bits (101), Expect = 4e-48
 Identities = 229/271 (84%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 321  tacttctttgaaccacgagctgctgcaaggtgatccgagacaaaatcaaaagctttagtt 380
            ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 2234 tacttttttgaaccacgagctgctgcaagatgatccgaaacaaaatcaaaagctttagtt 2175

                                                                        
Query: 381  tcatctttcttggaattgctcatcacagccacttgatgtggaggttgattacttgaattg 440
            ||||| ||||| || |||||||||||||| ||   |||| ||||||| ||||||||||||
Sbjct: 2174 tcatccttctttgagttgctcatcacagcaac---atgttgaggttggttacttgaattg 2118

                                                                        
Query: 441  aaaatatctggcatcccagatgcatttccgccactcattgaattgaaagccggatgccca 500
            || ||||| || | | |||||||||||||||   |||||| ||| |||| || ||| || 
Sbjct: 2117 aagatatcaggaagcacagatgcatttccgctgttcattgcattcaaagacgaatgtccc 2058

                                                                        
Query: 501  agtccagcactgaaatttcccaagttttgtagtaactgctgctgctgagcaagaagagct 560
            |  |||||| |||||||||| |  ||||| || | |||||||||||||||||||||| | 
Sbjct: 2057 aacccagcattgaaatttcctagattttgcagcagctgctgctgctgagcaagaagaaca 1998

                                           
Query: 561  tccatagcaccataatttaattgttgcccag 591
              ||||||||| || |||||||| |||||||
Sbjct: 1997 ctcatagcaccgtagtttaattgctgcccag 1967
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>ref|NM_188633.1| Oryza sativa (japonica cultivar-group), Ozsa8236 predicted mRNA
          Length = 2160

 Score =  157 bits (79), Expect = 6e-35
 Identities = 198/237 (83%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                        
Query: 355  ccgagacaaaatcaaaagctttagtttcatctttcttggaattgctcatcacagccactt 414
            |||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||  
Sbjct: 2047 ccgaaacaaaatcaaaagctttagtttcatccttctttgagttgctcatcacagcaac-- 1990

                                                                        
Query: 415  gatgtggaggttgattacttgaattgaaaatatctggcatcccagatgcatttccgccac 474
             |||| ||||||| |||||||||||||| ||||| || | | |||||||||||||||   
Sbjct: 1989 -atgttgaggttggttacttgaattgaagatatcaggaagcacagatgcatttccgctgt 1931

                                                                        
Query: 475  tcattgaattgaaagccggatgcccaagtccagcactgaaatttcccaagttttgtagta 534
            |||||| ||| |||| || ||| || |  |||||| |||||||||| |  ||||| || |
Sbjct: 1930 tcattgcattcaaagacgaatgtcccaacccagcattgaaatttcctagattttgcagca 1871

                                                                     
Query: 535  actgctgctgctgagcaagaagagcttccatagcaccataatttaattgttgcccag 591
             |||||||||||||||||||||| |   |||||||||||| |||||||| |||||||
Sbjct: 1870 gctgctgctgctgagcaagaagaacactcatagcaccatagtttaattgctgcccag 1814
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>emb|AJ575226.1|OSA575226 Oryza sativa (japonica cultivar-group) partial mRNA for VHS1
           protein
          Length = 696

 Score =  157 bits (79), Expect = 6e-35
 Identities = 198/237 (83%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                       
Query: 355 ccgagacaaaatcaaaagctttagtttcatctttcttggaattgctcatcacagccactt 414
           |||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||  
Sbjct: 696 ccgaaacaaaatcaaaagctttagtttcatccttctttgagttgctcatcacagcaac-- 639

                                                                       
Query: 415 gatgtggaggttgattacttgaattgaaaatatctggcatcccagatgcatttccgccac 474
            |||| ||||||| |||||||||||||| ||||| || | | |||||||||||||||   
Sbjct: 638 -atgttgaggttggttacttgaattgaagatatcaggaagcacagatgcatttccgctgt 580

                                                                       
Query: 475 tcattgaattgaaagccggatgcccaagtccagcactgaaatttcccaagttttgtagta 534
           |||||| ||| |||| || ||| || |  |||||| |||||||||| |  ||||| || |
Sbjct: 579 tcattgcattcaaagacgaatgtcccaacccagcattgaaatttcctagattttgcagca 520

                                                                    
Query: 535 actgctgctgctgagcaagaagagcttccatagcaccataatttaattgttgcccag 591
            |||||||||||||||||||||| |   |||||||||||| |||||||| |||||||
Sbjct: 519 gctgctgctgctgagcaagaagaacactcatagcaccatagtttaattgctgcccag 463
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 6e-35
 Identities = 198/237 (83%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                           
Query: 355     ccgagacaaaatcaaaagctttagtttcatctttcttggaattgctcatcacagccactt 414
               |||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||  
Sbjct: 7337539 ccgaaacaaaatcaaaagctttagtttcatccttctttgagttgctcatcacagcaac-- 7337482

                                                                           
Query: 415     gatgtggaggttgattacttgaattgaaaatatctggcatcccagatgcatttccgccac 474
                |||| ||||||| |||||||||||||| ||||| || | | |||||||||||||||   
Sbjct: 7337481 -atgttgaggttggttacttgaattgaagatatcaggaagcacagatgcatttccgctgt 7337423

                                                                           
Query: 475     tcattgaattgaaagccggatgcccaagtccagcactgaaatttcccaagttttgtagta 534
               |||||| ||| |||| || ||| || |  |||||| |||||||||| |  ||||| || |
Sbjct: 7337422 tcattgcattcaaagacgaatgtcccaacccagcattgaaatttcctagattttgcagca 7337363

                                                                        
Query: 535     actgctgctgctgagcaagaagagcttccatagcaccataatttaattgttgcccag 591
                |||||||||||||||||||||| |   |||||||||||| |||||||| |||||||
Sbjct: 7337362 gctgctgctgctgagcaagaagaacactcatagcaccatagtttaattgctgcccag 7337306



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 321     tacttctttgaaccacgagctgctgcaaggtgatcc 356
               ||||| ||||||||||||||||||||||| ||||||
Sbjct: 7337763 tacttttttgaaccacgagctgctgcaagatgatcc 7337728



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 266      agcctgacatttctgttcttgtcaaaat 293
                ||||||||||| ||||||| ||||||||
Sbjct: 38965931 agcctgacattactgttctagtcaaaat 38965904
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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431F01
          Length = 143209

 Score =  157 bits (79), Expect = 6e-35
 Identities = 198/237 (83%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                          
Query: 355    ccgagacaaaatcaaaagctttagtttcatctttcttggaattgctcatcacagccactt 414
              |||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||  
Sbjct: 138969 ccgaaacaaaatcaaaagctttagtttcatccttctttgagttgctcatcacagcaac-- 138912

                                                                          
Query: 415    gatgtggaggttgattacttgaattgaaaatatctggcatcccagatgcatttccgccac 474
               |||| ||||||| |||||||||||||| ||||| || | | |||||||||||||||   
Sbjct: 138911 -atgttgaggttggttacttgaattgaagatatcaggaagcacagatgcatttccgctgt 138853

                                                                          
Query: 475    tcattgaattgaaagccggatgcccaagtccagcactgaaatttcccaagttttgtagta 534
              |||||| ||| |||| || ||| || |  |||||| |||||||||| |  ||||| || |
Sbjct: 138852 tcattgcattcaaagacgaatgtcccaacccagcattgaaatttcctagattttgcagca 138793

                                                                       
Query: 535    actgctgctgctgagcaagaagagcttccatagcaccataatttaattgttgcccag 591
               |||||||||||||||||||||| |   |||||||||||| |||||||| |||||||
Sbjct: 138792 gctgctgctgctgagcaagaagaacactcatagcaccatagtttaattgctgcccag 138736



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 321    tacttctttgaaccacgagctgctgcaaggtgatcc 356
              ||||| ||||||||||||||||||||||| ||||||
Sbjct: 139193 tacttttttgaaccacgagctgctgcaagatgatcc 139158
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>gb|AC146891.3| Dasypus novemcinctus clone VMRC5-364E4, complete sequence
          Length = 133673

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 91    atttatttttaacttaaaccag 112
             ||||||||||||||||||||||
Sbjct: 48696 atttatttttaacttaaaccag 48675
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>emb|BX537306.5| Mouse DNA sequence from clone RP23-190K9 on chromosome 4, complete
            sequence
          Length = 27038

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 403  tcacagccacttgatgtggaggttga 428
            ||||||||||||||||||| ||||||
Sbjct: 4248 tcacagccacttgatgtgggggttga 4223
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>gb|AC140940.1| Gallus gallus BAC clone TAM32-30H10 from chromosome ul, complete
            sequence
          Length = 105327

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 338  agctgctgcaaggtgatccgag 359
            ||||||||||||||||||||||
Sbjct: 4859 agctgctgcaaggtgatccgag 4880
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 126    acacaatacaacacaataccccatc 150
              |||||| ||||||||||||||||||
Sbjct: 765915 acacaacacaacacaataccccatc 765891
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>gb|AC149302.1| Solanum demissum chromosome 11 clone PGEC400L14 map MAP_LOC, complete
             sequence
          Length = 136874

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 294   tctgaacatgacattcttttt 314
             |||||||||||||||||||||
Sbjct: 50754 tctgaacatgacattcttttt 50774
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>gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6, complete sequence
          Length = 158247

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 126   acacaatacaacacaataccccatc 150
             |||||| ||||||||||||||||||
Sbjct: 95521 acacaacacaacacaataccccatc 95497
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>gb|AC115005.11| Mus musculus chromosome 16, clone RP24-183G19, complete sequence
          Length = 188013

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 535   actgctgctgctgagcaagaagagc 559
             |||||||||||| ||||||||||||
Sbjct: 80494 actgctgctgctcagcaagaagagc 80470
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>gb|AC010235.7| Homo sapiens chromosome 5 clone CTC-339D2, complete sequence
          Length = 228600

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 367    caaaagctttagtttcatctt 387
              |||||||||||||||||||||
Sbjct: 137800 caaaagctttagtttcatctt 137780
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>gb|AC008546.6|AC008546 Homo sapiens chromosome 5 clone CTC-501K1, complete sequence
          Length = 205954

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   caaaagctttagtttcatctt 387
             |||||||||||||||||||||
Sbjct: 46963 caaaagctttagtttcatctt 46943
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>gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, complete sequence
          Length = 163871

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   tttagtttcatctttcttgga 394
             |||||||||||||||||||||
Sbjct: 53891 tttagtttcatctttcttgga 53871
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>emb|AL627162.4| Zebrafish DNA sequence from clone XX-KT119 in linkage group 7 Contains
             part of a gene similar to GAS2 (growth arrest-specific 2)
             a CpG island, complete sequence
          Length = 29255

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 289   aaaattctgaacatgacattctttt 313
             |||||||||||||| ||||||||||
Sbjct: 12583 aaaattctgaacataacattctttt 12559
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>emb|BX649405.13| Zebrafish DNA sequence from clone DKEY-190M16 in linkage group 1,
             complete sequence
          Length = 231915

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tgaatatacaatgtctgactc 38
             |||||||||||||||||||||
Sbjct: 23418 tgaatatacaatgtctgactc 23398
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>gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 map human ortholog p11.4,
              complete sequence
          Length = 159881

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 91     atttatttttaacttaaacca 111
              |||||||||||||||||||||
Sbjct: 131739 atttatttttaacttaaacca 131759
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>emb|AL928650.5| Zebrafish DNA sequence from clone CH211-160D14 in linkage group 17,
             complete sequence
          Length = 178563

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tgaatatacaatgtctgactc 38
             |||||||||||||||||||||
Sbjct: 73611 tgaatatacaatgtctgactc 73591
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>gb|AC132239.4| Mus musculus BAC clone RP24-534D4 from 13, complete sequence
          Length = 163009

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   atttcccaagttttgtagtaa 535
             |||||||||||||||||||||
Sbjct: 97675 atttcccaagttttgtagtaa 97655
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>emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chromosome 14, complete
             sequence
          Length = 200375

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   gaagcatgccaaacaaaccag 206
             |||||||||||||||||||||
Sbjct: 55651 gaagcatgccaaacaaaccag 55671
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>emb|AL929252.6| Zebrafish DNA sequence from clone CH211-150G13 in linkage group 7,
             complete sequence
          Length = 173244

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 289   aaaattctgaacatgacattctttt 313
             |||||||||||||| ||||||||||
Sbjct: 47942 aaaattctgaacataacattctttt 47966
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>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region
              DXS709-SRPX, complete sequence
          Length = 337101

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 91     atttatttttaacttaaacca 111
              |||||||||||||||||||||
Sbjct: 282676 atttatttttaacttaaacca 282696
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tggcatcccagatgcatttccgcc 472
              |||||| |||||||||||||||||
Sbjct: 854876 tggcattccagatgcatttccgcc 854899
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>gb|AC160134.2| Mus musculus BAC clone RP23-139G11 from chromosome 9, complete sequence
          Length = 176272

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 589    caggatatgattgaccaaacatttgtgg 616
              ||||| |||||||| |||||||||||||
Sbjct: 155274 caggacatgattgagcaaacatttgtgg 155301
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>gb|AC158156.10| Mus musculus chromosome 3, clone RP23-145F12, complete sequence
          Length = 201984

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   caatttatttttaacttaaa 108
            ||||||||||||||||||||
Sbjct: 7642 caatttatttttaacttaaa 7661
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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 399     ctcatcacagccacttgatgtgga 422
               |||||||||| |||||||||||||
Sbjct: 1355118 ctcatcacagacacttgatgtgga 1355095
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>gb|AY484588.1| Musa acuminata clone MuG9, genomic sequence
          Length = 73268

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 605   aaacatttgtggtgacaagttgta 628
             |||||||||||||||||| |||||
Sbjct: 64262 aaacatttgtggtgacaatttgta 64285
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>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence
          Length = 188507

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     caatttatttttaacttaaa 108
              ||||||||||||||||||||
Sbjct: 139130 caatttatttttaacttaaa 139149
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>emb|AJ829921.1| Xenopus laevis mRNA for FGF receptor-like protein (fgfrl1A gene)
          Length = 4245

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 530  tagtaactgctgctgctgagcaag 553
            |||||| |||||||||||||||||
Sbjct: 1660 tagtaaatgctgctgctgagcaag 1637
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>gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosome 2, complete sequence
          Length = 189633

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ctcacaatttatttttaact 104
              ||||||||||||||||||||
Sbjct: 175898 ctcacaatttatttttaact 175879
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>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence
          Length = 185953

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ctcacaatttatttttaact 104
              ||||||||||||||||||||
Sbjct: 152961 ctcacaatttatttttaact 152980
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>gb|AC101679.8| Mus musculus chromosome 17, clone RP23-173O19, complete sequence
          Length = 132957

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   cacaatacaacacaataccc 146
             ||||||||||||||||||||
Sbjct: 34398 cacaatacaacacaataccc 34379
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>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence
          Length = 182831

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 121    taaatacacaatacaacacaatac 144
              |||||||||||||||| |||||||
Sbjct: 131094 taaatacacaatacaaaacaatac 131117
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>emb|AL513130.11| Human DNA sequence from clone RP11-572D5 on chromosome 1 Contains part
             of the RYR2 gene for ryanodine receptor 2 (cardiac),
             complete sequence
          Length = 19799

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    acaatttatttttaacttaa 107
             ||||||||||||||||||||
Sbjct: 13691 acaatttatttttaacttaa 13672
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>emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on chromosome 6, complete
             sequence
          Length = 95430

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   aagttgtactgcaaaggaac 640
             ||||||||||||||||||||
Sbjct: 17584 aagttgtactgcaaaggaac 17603
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tggcatcccagatgcatttccgcc 472
              |||||| |||||||||||||||||
Sbjct: 904863 tggcattccagatgcatttccgcc 904886
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>gb|AC131310.3| Homo sapiens chromosome 15, clone RP11-150C6, complete sequence
          Length = 168425

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 85     ctcacaatttatttttaacttaaa 108
              |||||||||| |||||||||||||
Sbjct: 100385 ctcacaatttctttttaacttaaa 100362
to top
>gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome 9, complete sequence
          Length = 191328

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    taaatacacaatacaacacaatac 144
              |||||||||||||||| |||||||
Sbjct: 182197 taaatacacaatacaaaacaatac 182174
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tggcatcccagatgcatttccgcc 472
              |||||| |||||||||||||||||
Sbjct: 906062 tggcattccagatgcatttccgcc 906085
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>dbj|AK150031.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:G530122K13 product:unclassifiable, full
            insert sequence
          Length = 3240

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 92   tttatttttaacttaaaccagccttctt 119
            |||||||||||||||||  |||||||||
Sbjct: 2899 tttatttttaacttaaaaaagccttctt 2926
to top
>gb|AC090812.5| Homo sapiens chromosome 18, clone RP11-59J7, complete sequence
          Length = 176873

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    atttatttttaacttaaacc 110
             ||||||||||||||||||||
Sbjct: 52629 atttatttttaacttaaacc 52610
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>gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence
          Length = 160541

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   atttatttttaacttaaacc 110
            ||||||||||||||||||||
Sbjct: 3186 atttatttttaacttaaacc 3205
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>gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, complete sequence
          Length = 228922

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 546   tgagcaagaagagcttccat 565
             ||||||||||||||||||||
Sbjct: 96240 tgagcaagaagagcttccat 96259
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>ref|XM_625966.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_10),
           partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 537 tgctgctgctgagcaagaag 556
           ||||||||||||||||||||
Sbjct: 504 tgctgctgctgagcaagaag 523
to top
>gb|AY623815.1| Ellobius lutescens forkhead transcription factor Foxl2 gene, complete
            cds
          Length = 5841

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  aaatcaaaagctttagtttc 382
            ||||||||||||||||||||
Sbjct: 4708 aaatcaaaagctttagtttc 4727
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>dbj|AK038950.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230078D10 product:unclassifiable, full
            insert sequence
          Length = 3534

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  gtaactgctgctgctgagca 551
            ||||||||||||||||||||
Sbjct: 1680 gtaactgctgctgctgagca 1699
to top
>emb|BX548256.7| Zebrafish DNA sequence from clone DKEYP-75B4 in linkage group 1,
             complete sequence
          Length = 181272

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   ctaaatacacaatacaacacaata 143
             ||||||| ||||||||||||||||
Sbjct: 92884 ctaaataaacaatacaacacaata 92907
to top
>gb|AC011224.8|AC011224 Homo sapiens, clone RP11-10K20, complete sequence
          Length = 164916

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    ctcacaatttatttttaacttaaa 108
             |||||||||| |||||||||||||
Sbjct: 87352 ctcacaatttctttttaacttaaa 87375
to top
>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
             BACR25A06, complete sequence
          Length = 170163

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   gtagtaactgctgctgctga 548
             ||||||||||||||||||||
Sbjct: 72088 gtagtaactgctgctgctga 72107
to top
>gb|AC132154.3| Homo sapiens BAC clone RP11-523J2 from 2, complete sequence
          Length = 120590

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tatttgaatatacaatgtct 33
              ||||||||||||||||||||
Sbjct: 100490 tatttgaatatacaatgtct 100471
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>gb|AC146659.3| Otolemur garnettii clone CH256-432E12, complete sequence
          Length = 86405

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   ctcatcacagccacttgatgtgga 422
             |||||||||| |||||||||||||
Sbjct: 74874 ctcatcacagacacttgatgtgga 74851
to top
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tggcatcccagatgcatttccgcc 472
              |||||| |||||||||||||||||
Sbjct: 849693 tggcattccagatgcatttccgcc 849716
to top
>gb|AC127511.7| Homo sapiens chromosome 15, clone RP13-188P24, complete sequence
          Length = 201949

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     ctcacaatttatttttaacttaaa 108
              |||||||||| |||||||||||||
Sbjct: 113937 ctcacaatttctttttaacttaaa 113960
to top
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0674H09
          Length = 142955

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 266   agcctgacatttctgttcttgtcaaaat 293
             ||||||||||| ||||||| ||||||||
Sbjct: 39564 agcctgacattactgttctagtcaaaat 39537
to top
>emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chromosome 2, complete
              sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 92     tttatttttaacttaaaccagccttctt 119
              |||||||||||||||||  |||||||||
Sbjct: 118351 tttatttttaacttaaaaaagccttctt 118378
to top
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696G06
          Length = 142571

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 266    agcctgacatttctgttcttgtcaaaat 293
              ||||||||||| ||||||| ||||||||
Sbjct: 130717 agcctgacattactgttctagtcaaaat 130690
to top
>dbj|AB117614.1| Xenopus laevis FGFRL1 mRNA for fibroblast growth factor receptor like
            1, complete cds
          Length = 1892

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 530  tagtaactgctgctgctgagcaag 553
            |||||| |||||||||||||||||
Sbjct: 1630 tagtaaatgctgctgctgagcaag 1607
to top
>emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20,
              complete sequence
          Length = 169849

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    caaaatcaaaagctttagtt 380
              ||||||||||||||||||||
Sbjct: 114210 caaaatcaaaagctttagtt 114229
to top
>emb|BX276180.5| Zebrafish DNA sequence from clone CH211-284K10 in linkage group 20,
             complete sequence
          Length = 107893

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   aaagctttagtttcatcttt 388
             ||||||||||||||||||||
Sbjct: 84441 aaagctttagtttcatcttt 84422
to top
>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the
             complete sequence
          Length = 228284

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   gtagtaactgctgctgctga 548
             ||||||||||||||||||||
Sbjct: 77929 gtagtaactgctgctgctga 77948
to top
>gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromosome unknown, complete
              sequence
          Length = 223748

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    atatgattgaccaaacattt 612
              ||||||||||||||||||||
Sbjct: 190084 atatgattgaccaaacattt 190065
to top
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     ctttagtttcatctttcttg 392
               ||||||||||||||||||||
Sbjct: 1324783 ctttagtttcatctttcttg 1324764
to top
>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete
              sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ctcacaatttatttttaact 104
              ||||||||||||||||||||
Sbjct: 169446 ctcacaatttatttttaact 169427
to top
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
             sequence
          Length = 207901

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   gtaactgctgctgctgagca 551
             ||||||||||||||||||||
Sbjct: 20476 gtaactgctgctgctgagca 20457
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tggcatcccagatgcatttccgcc 472
              |||||| |||||||||||||||||
Sbjct: 808445 tggcattccagatgcatttccgcc 808468
to top
>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tggcatcccagatgcatttccgcc 472
              |||||| |||||||||||||||||
Sbjct: 904921 tggcattccagatgcatttccgcc 904944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,425,603
Number of Sequences: 3902068
Number of extensions: 8425603
Number of successful extensions: 162573
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162130
Number of HSP's gapped (non-prelim): 430
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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