ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I 45 3e-04
2SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1 42 0.002
3SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1 42 0.002
4YJT3_YEAST (P39542) Hypothetical protein YJL193w 39 0.011
5S35D1_HUMAN (Q9NTN3) UDP-glucuronic acid/UDP-N-acetylgalactosami... 39 0.014
6CB018_RAT (Q5RKH7) Protein C2orf18 homolog precursor 38 0.024
7TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non... 38 0.032
8US74C_DROME (Q95YI5) UDP-sugar transporter UST74c (Protein fring... 36 0.092
9GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2... 36 0.12
10CB018_MOUSE (Q8VE96) Protein C2orf18 homolog precursor 35 0.16
11CB018_PONPY (Q5RFT1) Protein C2orf18 homolog precursor 35 0.27
12CB018_HUMAN (Q8N357) Protein C2orf18 precursor 35 0.27
13YIY4_SCHPO (Q9UUI8) Protein C22F8.04 in chromosome I 34 0.35
14SQV7_CAEEL (Q18779) UDP-sugar transporter sqv-7 (Squashed vulva ... 33 1.0
15NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p... 30 6.6
16NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4... 30 6.6
17INX1_DROME (P27716) Innexin inx1 (Innexin-1) (Protein ogre) (Pro... 30 6.6
18FUCT1_HUMAN (Q96A29) GDP-fucose transporter 1 (Solute carrier fa... 30 6.6
19MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mo... 30 6.6
20POTE_ECOLI (P0AAF1) Putrescine-ornithine antiporter (Putrescine ... 30 8.7
21POTE_ECOL6 (P0AAF2) Putrescine-ornithine antiporter (Putrescine ... 30 8.7
22RHAT_ERWCT (Q6DA13) L-rhamnose-proton symporter (L-rhamnose-H(+)... 30 8.7
23NPT4_HUMAN (O00476) Sodium-dependent phosphate transport protein... 30 8.7

>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I|
          Length = 374

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 28/82 (34%), Positives = 44/82 (53%)
 Frame = -3

Query: 634 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSYFCT 455
           S F +I KTS VT  V G LK  + +    +  HD     NI+G++I + G+G+Y+Y+  
Sbjct: 294 SEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVITLCGIGVYNYY-- 351

Query: 454 RETQPKPTEASPQVTQVKEGES 389
           R T+    EA  +V  +   E+
Sbjct: 352 RITKGNKKEAEKEVEYIVLNEN 373



to top

>SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1|
          Length = 266

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467
           N   F ++   SP++Y V    K  +V+    ++L +P +  N+LG++ A++G+ LY+
Sbjct: 132 NVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYN 189



to top

>SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1|
          Length = 265

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467
           N   F ++   SP++Y V    K  +V+    ++L +P +  N+LG++ A++G+ LY+
Sbjct: 132 NVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYN 189



to top

>YJT3_YEAST (P39542) Hypothetical protein YJL193w|
          Length = 402

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 17/65 (26%), Positives = 37/65 (56%)
 Frame = -3

Query: 631 TFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSYFCTR 452
           TF ++G+ S +TY +   +K   ++A  +V +    +W  + G+++  +G+ LY   CT 
Sbjct: 333 TFHLLGEVSTLTYSIANLMKRFAIIAVSWVFIGRRITWLQVFGLVLNTLGLFLYER-CTS 391

Query: 451 ETQPK 437
           +++ K
Sbjct: 392 QSKIK 396



to top

>S35D1_HUMAN (Q9NTN3) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter|
           (UDP-GlcA/UDP-GalNAc transporter) (Solute carrier family
           35 member D1) (UDP-galactose transporter-related protein
           7) (UGTrel7)
          Length = 355

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = -3

Query: 637 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDP-FSWRNILGILIAVVGMGLYSYF 461
           ++T L     S +T  ++G +K  L+   G V   D  F+W N +G+ I++ G  +YSY 
Sbjct: 271 YATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYI 330

Query: 460 C-TRETQPKPTEAS 422
             T E   K +EA+
Sbjct: 331 TFTEEQLSKQSEAN 344



to top

>CB018_RAT (Q5RKH7) Protein C2orf18 homolog precursor|
          Length = 372

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS-- 467
           NFS   V  + S  T  VL  L+T ++ AF   L  + F    ILG LI ++G  LY+  
Sbjct: 277 NFSGISVTKELSATTRMVLDTLRTVVIWAFTLALGWEVFHPLQILGFLILLMGTALYNGL 336

Query: 466 ----YFCTRETQPKPTEASPQVTQVKEGESDPLIADS 368
                 C       PT+         EGE + L+ DS
Sbjct: 337 HRPLLACLSRRWRHPTQ---------EGEQERLLGDS 364



to top

>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green|
           plastid, chloroplast precursor (CTPT)
          Length = 402

 Score = 37.7 bits (86), Expect = 0.032
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = -3

Query: 631 TFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSYFCTR 452
           +++++ + SPVT+ V   +K  +V+    +    P S  N  G  IA+ G+ LYS    +
Sbjct: 336 SYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYSR--VK 393

Query: 451 ETQPKPTEA 425
             +PKP  A
Sbjct: 394 RIKPKPKTA 402



to top

>US74C_DROME (Q95YI5) UDP-sugar transporter UST74c (Protein fringe connection)|
          Length = 373

 Score = 36.2 bits (82), Expect = 0.092
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 643 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHD-PFSWRNILGILIAVVGMGLYS 467
           +++ST L     S +T  ++G LK   V   G  +  D  FSW N +GI I+V+   LY+
Sbjct: 290 LSYSTILCTQFNSALTTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINISVLASLLYT 349

Query: 466 YFCTR 452
           Y   R
Sbjct: 350 YVTFR 354



to top

>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast|
           precursor
          Length = 388

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467
           N  +++ + + SP+T+ +   +K   V+    ++ H P    N LG  IA+ G  LYS
Sbjct: 327 NQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPIQPVNALGAAIAIFGTFLYS 384



to top

>CB018_MOUSE (Q8VE96) Protein C2orf18 homolog precursor|
          Length = 372

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS-- 467
           NFS   V  + S  T  VL  L+T ++ AF   L  + F    ILG LI ++G  LY+  
Sbjct: 277 NFSGISVTKELSATTRMVLDTLRTIVIWAFTLALGWEIFYPLQILGFLILLMGTALYNGL 336

Query: 466 -----YFCTRETQPKPTEASPQVTQVKEGESDPLIADS 368
                 F +R  +  PT+         EGE + L+ DS
Sbjct: 337 HRPLLAFLSRRWR-LPTQ---------EGEQERLLGDS 364



to top

>CB018_PONPY (Q5RFT1) Protein C2orf18 homolog precursor|
          Length = 371

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467
           NF+   V  + S  T  VL  L+T ++ A    L  + F    ILG LI ++G  LY+
Sbjct: 277 NFAGISVTKELSATTRMVLDSLRTVVIWALSLALGWEAFHALQILGFLILLIGTALYN 334



to top

>CB018_HUMAN (Q8N357) Protein C2orf18 precursor|
          Length = 371

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 640 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467
           NF+   V  + S  T  VL  L+T ++ A    L  + F    ILG LI ++G  LY+
Sbjct: 277 NFAGISVTKELSATTRMVLDSLRTVVIWALSLALGWEAFHALQILGFLILLIGTALYN 334



to top

>YIY4_SCHPO (Q9UUI8) Protein C22F8.04 in chromosome I|
          Length = 383

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 643 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYS 467
           +N +TF  I  TSPVTY +    ++ L        L +      I G+++ +VG  LY+
Sbjct: 313 LNIATFTQIKVTSPVTYMISVSARSILQTLLAVAFLGETLYGNRIYGVILILVGTLLYT 371



to top

>SQV7_CAEEL (Q18779) UDP-sugar transporter sqv-7 (Squashed vulva protein 7)|
          Length = 329

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 643 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHD-PFSWRNILGILIAVVGMGLYS 467
           +N+S  L     S +T   +G +K   V   G     D  F W N  GI ++V G  LY+
Sbjct: 241 LNYSLVLCTHHNSALTTTCVGPIKNLFVTYVGMFSSGDYVFQWANFTGINVSVFGSILYT 300

Query: 466 YFCTR 452
           Y   R
Sbjct: 301 YVTFR 305



to top

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 318  RSPCGAPSMHGHERCSSDL*RCPCGAPSARGHERRFGPW 202
            R+ CG P  H H   +S   R P  AP    H R  G W
Sbjct: 1211 RARCGCPRPHPHRPRASH--RAPAAAPHHHRHRRAAGGW 1247



to top

>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 318  RSPCGAPSMHGHERCSSDL*RCPCGAPSARGHERRFGPW 202
            R+ CG P  H H   +S   R P  AP    H R  G W
Sbjct: 1211 RARCGCPRPHPHRPRASH--RAPAAAPHHHRHRRAAGGW 1247



to top

>INX1_DROME (P27716) Innexin inx1 (Innexin-1) (Protein ogre) (Protein optic|
           ganglion reduced)
          Length = 362

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 568 CLVLAFGYVLLHDP-FSWRNILGILIAVVGMGLYSYFCTRETQPKPTEA 425
           C VL F  +  + P F W    G L+ ++ MGL    CTRE +    +A
Sbjct: 113 CFVLFFQAMACYTPKFLWNKFEGGLMRMIVMGLNITICTREEKEAKRDA 161



to top

>FUCT1_HUMAN (Q96A29) GDP-fucose transporter 1 (Solute carrier family 35 member|
           C1)
          Length = 364

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -3

Query: 643 VNFSTFLVIGKTSPVTYQVLGHLKTC--LVLAFGYVLLHDPFSWRNILGILIAVVGMGLY 470
           + + T L I  TSP+T+ V G  K C   VLA  Y      F W      ++ + G   Y
Sbjct: 280 IGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWT--SNMMVLGGSSAY 337

Query: 469 SYFCTRETQPKPTEASPQ 416
           ++    E +  P E SP+
Sbjct: 338 TWVRGWEMKKTPEEPSPK 355



to top

>MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mob1 homolog 2A)|
          Length = 217

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 NYVYNTMNQGPKRRSCPRALGAPHGHLQRSEEQR-SCPCILGAP 307
           N +Y T++ G   +SCP   G P    +  +EQR   P  L AP
Sbjct: 73  NLIYGTISDGCTEQSCPVMSGGPKYEYRWQDEQRFRKPTALSAP 116



to top

>POTE_ECOLI (P0AAF1) Putrescine-ornithine antiporter (Putrescine transport|
           protein)
          Length = 439

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 649 SPVNFSTFLVIGKTSPVTYQV--LGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMG 476
           S V + T L+    SPV   +  +G L  C V  FG   +    S   + G++I VVG+ 
Sbjct: 106 SAVGYGTELLGASLSPVQIGLATIGVLWICTVANFGGARITGQISSITVWGVIIPVVGLC 165

Query: 475 LYSYF 461
           +  +F
Sbjct: 166 IIGWF 170



to top

>POTE_ECOL6 (P0AAF2) Putrescine-ornithine antiporter (Putrescine transport|
           protein)
          Length = 439

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 649 SPVNFSTFLVIGKTSPVTYQV--LGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMG 476
           S V + T L+    SPV   +  +G L  C V  FG   +    S   + G++I VVG+ 
Sbjct: 106 SAVGYGTELLGASLSPVQIGLATIGVLWICTVANFGGARITGQISSITVWGVIIPVVGLC 165

Query: 475 LYSYF 461
           +  +F
Sbjct: 166 IIGWF 170



to top

>RHAT_ERWCT (Q6DA13) L-rhamnose-proton symporter (L-rhamnose-H(+) transport|
           protein)
          Length = 344

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 589 VLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVVGMGLYSY 464
           ++G L T ++     VL   P     +LG+L+AV+G+ + SY
Sbjct: 112 IIGTLMTPVLQGKFSVLFGSPGGQMTLLGVLVAVIGVAIVSY 153



to top

>NPT4_HUMAN (O00476) Sodium-dependent phosphate transport protein 4|
           (Sodium/phosphate cotransporter 4) (Na(+)/PI
           cotransporter 4) (Solute carrier family 18 member 3)
          Length = 401

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 550 GYVLLHDP-FSWRNILGILIAVVGMGLYSYFCTRETQPKPTEASPQVTQV 404
           G++L  DP F WRN+  +L AV  +GL  Y    E   +      ++T++
Sbjct: 352 GFLLSQDPEFGWRNVFFLLFAVNLLGLLFYLIFGEADVQEWAKERKLTRL 401


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,998,007
Number of Sequences: 219361
Number of extensions: 1803036
Number of successful extensions: 4710
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4706
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top