ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34j06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U69536.1|TAU69536 Triticum aestivum Cu/Zn superoxide dismutas... 113 1e-22
2gb|U69632.1|TAU69632 Triticum aestivum Cu/Zn superoxide dismutas... 84 9e-14
3emb|AL110484.2|CEY38E10A Caenorhabditis elegans YAC Y38E10A, com... 44 0.077
4ref|NM_064297.3| Caenorhabditis elegans Y38E10A.15 (Y38E10A.15) ... 44 0.077
5gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, c... 42 0.30
6gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, comple... 42 0.30
7gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, comp... 42 0.30
8gb|AC135263.5| Homo sapiens chromosome 15, clone RP13-381O4, com... 42 0.30
9emb|CR450734.11| Zebrafish DNA sequence from clone DKEY-53N24 in... 42 0.30
10ref|XM_455378.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06578g ... 40 1.2
11gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, com... 40 1.2
12gb|BT022146.1| Drosophila melanogaster IP01459 full insert cDNA 40 1.2
13gb|AC107789.7| Mus musculus chromosome 1, clone RP23-409K18, com... 40 1.2
14emb|AL033517.1|HS279I9 Human DNA sequence from clone RP1-279I9 o... 40 1.2
15emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 1.2
16ref|NM_143171.2| Drosophila melanogaster CG4956-RA (CG4956), mRNA 40 1.2
17gb|AC008209.5|AC008209 Drosophila melanogaster, chromosome 3R, r... 40 1.2
18gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, r... 40 1.2
19gb|AC129951.9| Mus musculus chromosome 15, clone RP23-127B14, co... 40 1.2
20emb|AL450003.2|HS62F24 Homo sapiens chromosome 9 BAC RP11-62F24,... 40 1.2
21emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 i... 40 1.2
22gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91... 40 1.2
23emb|AL139316.5|CNS01DXH Human chromosome 14 DNA sequence BAC R-6... 40 1.2
24gb|AC119234.10| Mus musculus chromosome 19, clone RP24-211P24, c... 40 1.2
25ref|NM_105874.3| Arabidopsis thaliana transporter AT1G72160 mRNA... 38 4.8
26ref|XM_635335.1| Dictyostelium discoideum hypothetical protein (... 38 4.8
27gb|AF108083.1| Homo sapiens chromosome 7 BAC clone F5, complete ... 38 4.8
28gb|AC150866.2| Bos taurus BAC CH240-290G4 (Children's Hospital ... 38 4.8
29gb|AC150664.2| Bos taurus BAC CH240-244O10 (Children's Hospital... 38 4.8
30gb|AC149779.3| Bos taurus BAC CH240-5F6 (Children's Hospital Oa... 38 4.8
31gb|AC149232.2| Pan troglodytes BAC clone CH251-38H5 from 7, comp... 38 4.8
32gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's ... 38 4.8
33gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom... 38 4.8
34gb|AC161020.2| Pan troglodytes BAC clone CH251-19C5 from chromos... 38 4.8
35gb|AE006431.1| Lactococcus lactis subsp. lactis IL1403 section 1... 38 4.8
36gb|AC138110.3| Mus musculus BAC clone RP24-363O16 from chromosom... 38 4.8
37gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 38 4.8
38gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 4.8
39gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, comple... 38 4.8
40emb|BX511096.7| Zebrafish DNA sequence from clone CH211-241F5 in... 38 4.8
41emb|CR932304.1|CNS0KYL1 Paramecium tetraurelia macronuclear, Kin... 38 4.8
42emb|Z98853.2|CER08A2 Caenorhabditis elegans Cosmid R08A2, comple... 38 4.8
43gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, co... 38 4.8
44gb|AC146169.2| Pan troglodytes BAC clone RP43-1A11 from 7, compl... 38 4.8
45gb|AC092447.5| Homo sapiens BAC clone RP11-760D2 from 7, complet... 38 4.8
46gb|AC022202.12| Homo sapiens BAC clone RP11-321E8 from 7, comple... 38 4.8
47gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, comple... 38 4.8
48ref|XM_727191.1| Plasmodium chabaudi chabaudi hyothetical protei... 38 4.8
49ref|XM_673446.1| Plasmodium berghei strain ANKA hyothetical prot... 38 4.8
50gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequ... 38 4.8
51gb|U41009.1| Caenorhabditis elegans cosmid C06E7, complete sequence 38 4.8
52gb|AC099618.4| Mus musculus chromosome 1, clone RP23-455H15, com... 38 4.8
53emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in... 38 4.8
54emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 38 4.8
55emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 38 4.8
56gb|AC162387.9| Mus musculus 10 BAC RP24-178D16 (Roswell Park Can... 38 4.8
57gb|AC090000.17| Homo sapiens 12 BAC RP11-288B23 (Roswell Park Ca... 38 4.8
58gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence 38 4.8
59gb|AF502689.1| Leaf litter ascomycete strain its113 isolate 1000... 38 4.8
60gb|AF502678.1| Leaf litter ascomycete strain its099 isolate 1000... 38 4.8
61gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, comp... 38 4.8
62gb|AC109465.3| Homo sapiens chromosome 5 clone RP11-298P6, compl... 38 4.8
63gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, com... 38 4.8
64gb|AC097529.2| Homo sapiens BAC clone RP11-669F3 from 4, complet... 38 4.8
65gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3... 38 4.8
66emb|BX649325.3| Zebrafish DNA sequence from clone DKEY-81F9 in l... 38 4.8
67gb|AC150440.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 38 4.8
68dbj|AK221110.1| Arabidopsis thaliana mRNA for cytosolic factor, ... 38 4.8
69gb|AC147640.3| Mus musculus BAC clone RP23-131P20 from chromosom... 38 4.8
70gb|AY048199.1| Arabidopsis thaliana At1g72160/T9N14_8 mRNA, comp... 38 4.8
71gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, r... 38 4.8
72emb|BX294435.5| Zebrafish DNA sequence from clone DKEYP-32G6 in ... 38 4.8
73dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
74gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, r... 38 4.8
75gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromos... 38 4.8
76gb|AC067754.6|AC067754 Arabidopsis thaliana chromosome 1 BAC T9N... 38 4.8
77dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 38 4.8
78emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chr... 38 4.8
79emb|BX119915.8| Zebrafish DNA sequence from clone CH211-10J20 in... 38 4.8
80emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in ... 38 4.8
81emb|CR352221.10| Zebrafish DNA sequence from clone DKEY-87M9 in ... 38 4.8
82emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-3... 38 4.8
83gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14... 38 4.8
84emb|CR932733.1|CNS0KYMM Paramecium tetraurelia, epiplasmin, puta... 38 4.8
85emb|BX005103.4| Zebrafish DNA sequence from clone CH211-149O7 in... 38 4.8
86gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 38 4.8
87emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in ... 38 4.8
88gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 ... 38 4.8
89gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 38 4.8
90gb|AC002507.1|AC002507 Human Cosmid g5129z132 from 7q31.3, compl... 38 4.8
91gb|AC002500.1|AC002500 Human Cosmid g5129z101 from 7q31.3, compl... 38 4.8 
>gb|U69536.1|TAU69536 Triticum aestivum Cu/Zn superoxide dismutase (SOD1.1) mRNA, nuclear
           gene encoding chloroplast protein, complete cds
          Length = 883

 Score =  113 bits (57), Expect = 1e-22
 Identities = 82/89 (92%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagctcaacaagac-aaagtttggaaacatttatttgataaatttaactttacactga 59
           |||||||||||||||| ||||| || |||||||||||||||||| | |||||||||||||
Sbjct: 808 catagctcaacaagacgaaagtgtgcaaacatttatttgataaactcaactttacactga 749

                                        
Query: 60  tacaaatgatcaacagaaactatcaagca 88
           |||||| |||||||||||||||| |||||
Sbjct: 748 tacaaacgatcaacagaaactattaagca 720
to top
>gb|U69632.1|TAU69632 Triticum aestivum Cu/Zn superoxide dismutase (SOD1.2) mRNA, nuclear
           gene encoding chloroplast protein, complete cds
          Length = 781

 Score = 83.8 bits (42), Expect = 9e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 31  tttatttgataaatttaactttacactgatacaaatgatcaacagaaactatcaagca 88
           ||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 780 tttatttgataaactcaactttacactgatacaaacgatcaacagaaactattaagca 723
to top
>emb|AL110484.2|CEY38E10A Caenorhabditis elegans YAC Y38E10A, complete sequence
          Length = 110933

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 27    aacatttatttgataaatttaa 48
             ||||||||||||||||||||||
Sbjct: 57678 aacatttatttgataaatttaa 57657
to top
>ref|NM_064297.3| Caenorhabditis elegans Y38E10A.15 (Y38E10A.15) mRNA, complete cds
          Length = 325

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 27  aacatttatttgataaatttaa 48
           ||||||||||||||||||||||
Sbjct: 319 aacatttatttgataaatttaa 298
to top
>gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, complete sequence
          Length = 217553

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     acatttatttgataaatttaa 48
              |||||||||||||||||||||
Sbjct: 158231 acatttatttgataaatttaa 158251
to top
>gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, complete sequence
          Length = 187670

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    acatttatttgataaatttaa 48
             |||||||||||||||||||||
Sbjct: 63877 acatttatttgataaatttaa 63857
to top
>gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, complete sequence
          Length = 154272

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 23     tggaaacatttatttgataaattta 47
              ||||||||||||||| |||||||||
Sbjct: 138957 tggaaacatttatttaataaattta 138933
to top
>gb|AC135263.5| Homo sapiens chromosome 15, clone RP13-381O4, complete sequence
          Length = 36235

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    acatttatttgataaatttaa 48
             |||||||||||||||||||||
Sbjct: 29767 acatttatttgataaatttaa 29747
to top
>emb|CR450734.11| Zebrafish DNA sequence from clone DKEY-53N24 in linkage group 5,
             complete sequence
          Length = 73893

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    tttgataaatttaactttaca 55
             |||||||||||||||||||||
Sbjct: 67430 tttgataaatttaactttaca 67410
to top
>ref|XM_455378.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06578g predicted mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   aaagtttggaaacatttatt 36
            ||||||||||||||||||||
Sbjct: 1271 aaagtttggaaacatttatt 1252
to top
>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence
          Length = 164107

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    aagacaaagtttggaaacat 31
             ||||||||||||||||||||
Sbjct: 28903 aagacaaagtttggaaacat 28922
to top
>gb|BT022146.1| Drosophila melanogaster IP01459 full insert cDNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 atttatttgataaatttaac 49
          ||||||||||||||||||||
Sbjct: 37 atttatttgataaatttaac 56
to top
>gb|AC107789.7| Mus musculus chromosome 1, clone RP23-409K18, complete sequence
          Length = 242347

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     ttggaaacatttatttgataaatt 45
              |||||||||||||||| |||||||
Sbjct: 207176 ttggaaacatttatttcataaatt 207153
to top
>emb|AL033517.1|HS279I9 Human DNA sequence from clone RP1-279I9 on chromosome 6p24.1-25.3
             Contains part of the GMDS gene for GDP-mannose 4
             6-dehydratase, complete sequence
          Length = 111311

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    acaaagtttggaaacattta 34
             ||||||||||||||||||||
Sbjct: 51509 acaaagtttggaaacattta 51490
to top
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aaagtttggaaacatttatt 36
              ||||||||||||||||||||
Sbjct: 635990 aaagtttggaaacatttatt 635971
to top
>ref|NM_143171.2| Drosophila melanogaster CG4956-RA (CG4956), mRNA
          Length = 1038

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 atttatttgataaatttaac 49
          ||||||||||||||||||||
Sbjct: 37 atttatttgataaatttaac 56
to top
>gb|AC008209.5|AC008209 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
             BACR06K17, complete sequence
          Length = 169902

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atttatttgataaatttaac 49
             ||||||||||||||||||||
Sbjct: 51192 atttatttgataaatttaac 51173
to top
>gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
              BACR48J06, complete sequence
          Length = 163970

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     atttatttgataaatttaac 49
              ||||||||||||||||||||
Sbjct: 121961 atttatttgataaatttaac 121942
to top
>gb|AC129951.9| Mus musculus chromosome 15, clone RP23-127B14, complete sequence
          Length = 211987

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     agacaaagtttggaaacatt 32
              ||||||||||||||||||||
Sbjct: 111881 agacaaagtttggaaacatt 111900
to top
>emb|AL450003.2|HS62F24 Homo sapiens chromosome 9 BAC RP11-62F24, complete sequence
          Length = 160737

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 20    gtttggaaacatttatttgataaattta 47
             ||||||| |||||||| |||||||||||
Sbjct: 33628 gtttggagacatttatatgataaattta 33601
to top
>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19,
            complete sequence
          Length = 182182

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   tatttgataaatttaacttt 52
            ||||||||||||||||||||
Sbjct: 2252 tatttgataaatttaacttt 2233
to top
>gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91 of 118 of the complete
              sequence
          Length = 226793

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     atttatttgataaatttaac 49
              ||||||||||||||||||||
Sbjct: 116977 atttatttgataaatttaac 116958
to top
>emb|AL139316.5|CNS01DXH Human chromosome 14 DNA sequence BAC R-698F20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192440

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    atttgataaatttaacttta 53
             ||||||||||||||||||||
Sbjct: 61423 atttgataaatttaacttta 61404
to top
>gb|AC119234.10| Mus musculus chromosome 19, clone RP24-211P24, complete sequence
          Length = 143832

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aagacaaagtttggaaacat 31
             ||||||||||||||||||||
Sbjct: 20079 aagacaaagtttggaaacat 20060
to top
>ref|NM_105874.3| Arabidopsis thaliana transporter AT1G72160 mRNA, complete cds
          Length = 1770

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   acaaagtttggaaacattt 33
            |||||||||||||||||||
Sbjct: 1566 acaaagtttggaaacattt 1548
to top
>ref|XM_635335.1| Dictyostelium discoideum hypothetical protein (DDB0215339), partial
            mRNA
          Length = 4623

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   atttatttgataaatttaa 48
            |||||||||||||||||||
Sbjct: 3320 atttatttgataaatttaa 3338
to top
>gb|AF108083.1| Homo sapiens chromosome 7 BAC clone F5, complete sequence
          Length = 65489

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    aaacatttatttgataaat 44
             |||||||||||||||||||
Sbjct: 46226 aaacatttatttgataaat 46208
to top
>gb|AC150866.2| Bos taurus  BAC CH240-290G4 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 170911

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     tttatttgataaatttaac 49
              |||||||||||||||||||
Sbjct: 162785 tttatttgataaatttaac 162767
to top
>gb|AC150664.2| Bos taurus  BAC CH240-244O10 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 158286

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tttatttgataaatttaac 49
             |||||||||||||||||||
Sbjct: 71900 tttatttgataaatttaac 71882
to top
>gb|AC149779.3| Bos taurus  BAC CH240-5F6 (Children's Hospital Oakland Research Institute
              Bovine BAC Library (male)) complete sequence
          Length = 181013

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     tttatttgataaatttaac 49
              |||||||||||||||||||
Sbjct: 170214 tttatttgataaatttaac 170232
to top
>gb|AC149232.2| Pan troglodytes BAC clone CH251-38H5 from 7, complete sequence
          Length = 184062

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     atacaaatgatcaacagaa 77
              |||||||||||||||||||
Sbjct: 114500 atacaaatgatcaacagaa 114482
to top
>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 245677

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     aaacatttatttgataaat 44
              |||||||||||||||||||
Sbjct: 159632 aaacatttatttgataaat 159650
to top
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
             sequence
          Length = 137709

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    agcaccggaggtgtgaaat 103
             |||||||||||||||||||
Sbjct: 43957 agcaccggaggtgtgaaat 43975
to top
>gb|AC161020.2| Pan troglodytes BAC clone CH251-19C5 from chromosome 7, complete sequence
          Length = 200756

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     atacaaatgatcaacagaa 77
              |||||||||||||||||||
Sbjct: 160022 atacaaatgatcaacagaa 160004
to top
>gb|AE006431.1| Lactococcus lactis subsp. lactis IL1403 section 193 of 218 of the
            complete genome
          Length = 11481

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 32   ttatttgataaatttaact 50
            |||||||||||||||||||
Sbjct: 4130 ttatttgataaatttaact 4148
to top
>gb|AC138110.3| Mus musculus BAC clone RP24-363O16 from chromosome 1, complete sequence
          Length = 158654

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     acatttatttgataaattt 46
              |||||||||||||||||||
Sbjct: 135211 acatttatttgataaattt 135229
to top
>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     atttatttgataaatttaa 48
              |||||||||||||||||||
Sbjct: 334965 atttatttgataaatttaa 334947
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 85       agcaccggaggtgtgaaat 103
                |||||||||||||||||||
Sbjct: 15293391 agcaccggaggtgtgaaat 15293373
to top
>gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, complete sequence
          Length = 157075

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aaacatttatttgataaat 44
             |||||||||||||||||||
Sbjct: 49719 aaacatttatttgataaat 49737
to top
>emb|BX511096.7| Zebrafish DNA sequence from clone CH211-241F5 in linkage group 3,
             complete sequence
          Length = 144398

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 31    tttatttgataaatttaacttta 53
             |||||||||| ||||||||||||
Sbjct: 14825 tttatttgattaatttaacttta 14803
to top
>emb|CR932304.1|CNS0KYL1 Paramecium tetraurelia macronuclear, Kinetodesmal fiber gene
          Length = 1059

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 30 atttatttgataaatttaa 48
          |||||||||||||||||||
Sbjct: 96 atttatttgataaatttaa 78
to top
>emb|Z98853.2|CER08A2 Caenorhabditis elegans Cosmid R08A2, complete sequence
          Length = 19498

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tttggaaacatttatttga 39
             |||||||||||||||||||
Sbjct: 17887 tttggaaacatttatttga 17905
to top
>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence
          Length = 199993

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     aacagaaactatcaagcac 89
              |||||||||||||||||||
Sbjct: 195418 aacagaaactatcaagcac 195400
to top
>gb|AC146169.2| Pan troglodytes BAC clone RP43-1A11 from 7, complete sequence
          Length = 190018

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     aaacatttatttgataaat 44
              |||||||||||||||||||
Sbjct: 145610 aaacatttatttgataaat 145628
to top
>gb|AC092447.5| Homo sapiens BAC clone RP11-760D2 from 7, complete sequence
          Length = 176547

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     atacaaatgatcaacagaa 77
              |||||||||||||||||||
Sbjct: 151401 atacaaatgatcaacagaa 151383
to top
>gb|AC022202.12| Homo sapiens BAC clone RP11-321E8 from 7, complete sequence
          Length = 95097

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    atacaaatgatcaacagaa 77
             |||||||||||||||||||
Sbjct: 13592 atacaaatgatcaacagaa 13610
to top
>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence
          Length = 70276

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    catttatttgataaattta 47
             |||||||||||||||||||
Sbjct: 28476 catttatttgataaattta 28458
to top
>ref|XM_727191.1| Plasmodium chabaudi chabaudi hyothetical protein (PC300647.00.0)
          partial mRNA
          Length = 477

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 15 acaaagtttggaaacatttattt 37
          |||||||||||||||||| ||||
Sbjct: 12 acaaagtttggaaacattaattt 34
to top
>ref|XM_673446.1| Plasmodium berghei strain ANKA hyothetical protein (PB000380.02.0)
           partial mRNA
          Length = 1020

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 15  acaaagtttggaaacatttattt 37
           |||||||||||||||||| ||||
Sbjct: 420 acaaagtttggaaacattgattt 442
to top
>gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequence
          Length = 85060

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    ggaaacatttatttgataa 42
             |||||||||||||||||||
Sbjct: 51053 ggaaacatttatttgataa 51071
to top
>gb|U41009.1| Caenorhabditis elegans cosmid C06E7, complete sequence
          Length = 44451

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    gtttggaaacatttatttg 38
             |||||||||||||||||||
Sbjct: 41202 gtttggaaacatttatttg 41220
to top
>gb|AC099618.4| Mus musculus chromosome 1, clone RP23-455H15, complete sequence
          Length = 171215

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     acatttatttgataaattt 46
              |||||||||||||||||||
Sbjct: 170380 acatttatttgataaattt 170362
to top
>emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in linkage group 3,
             complete sequence
          Length = 160005

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aaacatttatttgataaat 44
             |||||||||||||||||||
Sbjct: 25286 aaacatttatttgataaat 25304
to top
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    acatttatttgataaattt 46
             |||||||||||||||||||
Sbjct: 22033 acatttatttgataaattt 22015
to top
>emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              14/17
          Length = 348498

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 31     tttatttgataaatttaacttta 53
              ||||||| |||||||||||||||
Sbjct: 264357 tttattttataaatttaacttta 264379
to top
>gb|AC162387.9| Mus musculus 10 BAC RP24-178D16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 165829

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     tggaaacatttatttgata 41
              |||||||||||||||||||
Sbjct: 129499 tggaaacatttatttgata 129481
to top
>gb|AC090000.17| Homo sapiens 12 BAC RP11-288B23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 173552

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    actgatacaaatgatcaac 73
             |||||||||||||||||||
Sbjct: 53174 actgatacaaatgatcaac 53192
to top
>gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence
          Length = 177017

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tttatttgataaatttaac 49
             |||||||||||||||||||
Sbjct: 97529 tttatttgataaatttaac 97511
to top
>gb|AF502689.1| Leaf litter ascomycete strain its113 isolate 1000586846 internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 414

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 30  atttatttgataaatttaa 48
           |||||||||||||||||||
Sbjct: 124 atttatttgataaatttaa 106
to top
>gb|AF502678.1| Leaf litter ascomycete strain its099 isolate 1000586877 internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 473

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 30  atttatttgataaatttaa 48
           |||||||||||||||||||
Sbjct: 155 atttatttgataaatttaa 137
to top
>gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, complete sequence
          Length = 179308

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     aaatgatcaacagaaacta 81
              |||||||||||||||||||
Sbjct: 139105 aaatgatcaacagaaacta 139087
to top
>gb|AC109465.3| Homo sapiens chromosome 5 clone RP11-298P6, complete sequence
          Length = 188150

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 29/31 (93%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                             
Query: 31     tttatttgat-aaatttaactttacactgat 60
              |||||||||| ||||||||||||||| ||||
Sbjct: 132112 tttatttgattaaatttaactttacaatgat 132142
to top
>gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, complete sequence
          Length = 211445

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 30    atttatttgataaatttaacttt 52
             |||||||| ||||||||||||||
Sbjct: 50361 atttattttataaatttaacttt 50383
to top
>gb|AC097529.2| Homo sapiens BAC clone RP11-669F3 from 4, complete sequence
          Length = 54264

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 61   acaaatgatcaacagaaac 79
            |||||||||||||||||||
Sbjct: 4892 acaaatgatcaacagaaac 4874
to top
>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    atttatttgataaatttaa 48
             |||||||||||||||||||
Sbjct: 56321 atttatttgataaatttaa 56303
to top
>emb|BX649325.3| Zebrafish DNA sequence from clone DKEY-81F9 in linkage group 24,
             complete sequence
          Length = 169135

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 11    caagacaaagtttggaaacatttattt 37
             ||||||||  |||||||||||||||||
Sbjct: 21182 caagacaagatttggaaacatttattt 21208
to top
>gb|AC150440.3| Medicago truncatula chromosome 7 BAC clone mth2-189e2, complete
             sequence
          Length = 113968

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 30    atttatttgataaatttaacttt 52
             ||||||||||||||||| |||||
Sbjct: 26378 atttatttgataaattttacttt 26400
to top
>dbj|AK221110.1| Arabidopsis thaliana mRNA for cytosolic factor, partial cds, clone:
           RAFL22-89-F19
          Length = 508

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  acaaagtttggaaacattt 33
           |||||||||||||||||||
Sbjct: 375 acaaagtttggaaacattt 357
to top
>gb|AC147640.3| Mus musculus BAC clone RP23-131P20 from chromosome 10, complete sequence
          Length = 217527

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     tttggaaacatttatttga 39
              |||||||||||||||||||
Sbjct: 128795 tttggaaacatttatttga 128777
to top
>gb|AY048199.1| Arabidopsis thaliana At1g72160/T9N14_8 mRNA, complete cds
          Length = 1749

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   acaaagtttggaaacattt 33
            |||||||||||||||||||
Sbjct: 1550 acaaagtttggaaacattt 1532
to top
>gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone
              BACR11D14, complete sequence
          Length = 158347

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 32     ttatttgataaatttaactttac 54
              ||||||||||| |||||||||||
Sbjct: 151613 ttatttgataagtttaactttac 151635
to top
>emb|BX294435.5| Zebrafish DNA sequence from clone DKEYP-32G6 in linkage group 25,
             complete sequence
          Length = 128861

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    aaagtttggaaacatttat 35
             |||||||||||||||||||
Sbjct: 21053 aaagtttggaaacatttat 21071
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 85       agcaccggaggtgtgaaat 103
                |||||||||||||||||||
Sbjct: 15287925 agcaccggaggtgtgaaat 15287907
to top
>gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
              BACR48D02, complete sequence
          Length = 181728

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 32     ttatttgataaatttaactttac 54
              ||||||||||| |||||||||||
Sbjct: 179234 ttatttgataagtttaactttac 179212
to top
>gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromosome 7, complete sequence
          Length = 191966

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     atacaaatgatcaacagaa 77
              |||||||||||||||||||
Sbjct: 171676 atacaaatgatcaacagaa 171658
to top
>gb|AC067754.6|AC067754 Arabidopsis thaliana chromosome 1 BAC T9N14 genomic sequence, complete
             sequence
          Length = 98874

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    acaaagtttggaaacattt 33
             |||||||||||||||||||
Sbjct: 17730 acaaagtttggaaacattt 17748
to top
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 31      tttatttgataaatttaac 49
               |||||||||||||||||||
Sbjct: 1975145 tttatttgataaatttaac 1975163
to top
>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
            sequence
          Length = 189900

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 17   aaagtttggaaacatttat 35
            |||||||||||||||||||
Sbjct: 2893 aaagtttggaaacatttat 2875
to top
>emb|BX119915.8| Zebrafish DNA sequence from clone CH211-10J20 in linkage group 20,
             complete sequence
          Length = 90306

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    aaagtttggaaacatttat 35
             |||||||||||||||||||
Sbjct: 44527 aaagtttggaaacatttat 44545
to top
>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20,
              complete sequence
          Length = 116609

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 26     aaacatttatttgataaatttaa 48
              ||||||||||||||||| |||||
Sbjct: 101819 aaacatttatttgataattttaa 101841
to top
>emb|CR352221.10| Zebrafish DNA sequence from clone DKEY-87M9 in linkage group 3,
             complete sequence
          Length = 183589

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 31    tttatttgataaatttaacttta 53
             |||||||||| ||||||||||||
Sbjct: 11390 tttatttgattaatttaacttta 11368
to top
>emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-354E14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174933

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    tgatcaacagaaactatca 84
             |||||||||||||||||||
Sbjct: 93743 tgatcaacagaaactatca 93725
to top
>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete
             sequence
          Length = 290034

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 32    ttatttgataaatttaactttac 54
             ||||||||||| |||||||||||
Sbjct: 99994 ttatttgataagtttaactttac 99972
to top
>emb|CR932733.1|CNS0KYMM Paramecium tetraurelia, epiplasmin, putative, complete gene
          Length = 2853

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   atttatttgataaatttaa 48
            |||||||||||||||||||
Sbjct: 1858 atttatttgataaatttaa 1876
to top
>emb|BX005103.4| Zebrafish DNA sequence from clone CH211-149O7 in linkage group 25,
              complete sequence
          Length = 150295

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 17     aaagtttggaaacatttat 35
              |||||||||||||||||||
Sbjct: 118356 aaagtttggaaacatttat 118338
to top
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atttatttgataaatttaa 48
              |||||||||||||||||||
Sbjct: 106910 atttatttgataaatttaa 106928
to top
>emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in linkage group 3,
             complete sequence
          Length = 121030

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    aaacatttatttgataaat 44
             |||||||||||||||||||
Sbjct: 81574 aaacatttatttgataaat 81556
to top
>gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 DS06482 (D76)), complete
             sequence
          Length = 87124

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 32    ttatttgataaatttaactttac 54
             ||||||||||| |||||||||||
Sbjct: 10224 ttatttgataagtttaactttac 10202
to top
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 11     caagacaaagtttggaaacatttattt 37
              ||||||||||||| |||| ||||||||
Sbjct: 785781 caagacaaagtttagaaatatttattt 785755
to top
>gb|AC002507.1|AC002507 Human Cosmid g5129z132 from 7q31.3, complete sequence
          Length = 41763

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    gaaacatttatttgataaa 43
             |||||||||||||||||||
Sbjct: 35467 gaaacatttatttgataaa 35485
to top
>gb|AC002500.1|AC002500 Human Cosmid g5129z101 from 7q31.3, complete sequence
          Length = 41084

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  gaaacatttatttgataaa 43
           |||||||||||||||||||
Sbjct: 611 gaaacatttatttgataaa 629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,628,702
Number of Sequences: 3902068
Number of extensions: 1628702
Number of successful extensions: 184487
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 183989
Number of HSP's gapped (non-prelim): 498
length of query: 106
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 85
effective length of database: 17,151,101,840
effective search space: 1457843656400
effective search space used: 1457843656400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top