ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1o03 |
|---|---|
| Clone Library Name | barley_pub |
>FUT1_PEA (Q9M5Q1) Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69)| (Xyloglucan alpha-(1,2)-fucosyltransferase) (PsFT1) Length = 565 Score = 180 bits (456), Expect = 3e-45 Identities = 89/184 (48%), Positives = 123/184 (66%), Gaps = 9/184 (4%) Frame = -2 Query: 553 SCVRREKLLP----ESTSSFSKTNASDQAVLVTSLSSWYYERIRDEYGG-----GRVAGG 401 +C +E +LP E + S +AVL+TSLSS Y+E++RD Y G V G Sbjct: 389 ACTLKESILPDVNREQNINSSSGTPKSKAVLITSLSSGYFEKVRDMYWEFPTETGEVVG- 447 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTA 221 ++QPSHEG Q+ H+++A +EMYLLS DVLVT+ +STFGYVAQGLGG++PWI+ Sbjct: 448 IYQPSHEGYQQTQKQFHNQKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWIL--- 504 Query: 220 PIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGI 41 E+ P PPC RAMS+EPCFH+P +YDC A++ D G ++P+VRHCED+SWG+ Sbjct: 505 ----YKPENRTAPNPPCQRAMSMEPCFHAPPFYDCKAKRGTDTGALVPHVRHCEDMSWGL 560 Query: 40 KIAN 29 K+ + Sbjct: 561 KLVD 564
>FUT1_ARATH (Q9SWH5) Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69)| (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1) Length = 558 Score = 173 bits (438), Expect = 3e-43 Identities = 88/182 (48%), Positives = 120/182 (65%), Gaps = 9/182 (4%) Frame = -2 Query: 553 SCVRREKLLPESTSSFSKTN----ASDQAVLVTSLSSWYYERIRDEY-----GGGRVAGG 401 SC ++EKLLPE + ++ +AVLVTSL++ Y E ++ Y G + G Sbjct: 384 SCTQKEKLLPEVDTLVERSRHVNTPKHKAVLVTSLNAGYAENLKSMYWEYPTSTGEIIG- 442 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTA 221 VHQPS EG Q+ H+ +AL+EMYLLS D LVT+ +STFGYVAQGLGG++PWI+ Sbjct: 443 VHQPSQEGYQQTEKKMHNGKALAEMYLLSLTDNLVTSAWSTFGYVAQGLGGLKPWIL--- 499 Query: 220 PIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGI 41 E+ P+P C RAMS+EPCFHSP +YDC A+ +D G ++P+VRHCED+SWG+ Sbjct: 500 ----YRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDISWGL 555 Query: 40 KI 35 K+ Sbjct: 556 KL 557
>FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2)| Length = 539 Score = 171 bits (434), Expect = 1e-42 Identities = 88/185 (47%), Positives = 118/185 (63%), Gaps = 10/185 (5%) Frame = -2 Query: 553 SCVRREKLLP------ESTSSFSKTNASDQAVLVTSLSSWYYERIRDEYGGG----RVAG 404 SCV+ E LLP E S+ ++VLVTSL++ Y+E ++ Y R Sbjct: 360 SCVQNENLLPRLSKGEEQYKQPSEEELKLKSVLVTSLTTGYFEILKTMYWENPTVTRDVI 419 Query: 403 GVHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPT 224 G+HQPSHEG Q+ H+++A +EMYLLS D LV + +STFGYVAQGLGG+R WI+ Sbjct: 420 GIHQPSHEGHQQTEKLMHNRKAWAEMYLLSLTDKLVISAWSTFGYVAQGLGGLRAWIL-- 477 Query: 223 APIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWG 44 +E+ P PPC RAMS +PCFH+P YYDC A+K D G V+P+VRHCED+SWG Sbjct: 478 -----YKQENQTNPNPPCGRAMSPDPCFHAPPYYDCKAKKGTDTGNVVPHVRHCEDISWG 532 Query: 43 IKIAN 29 +K+ + Sbjct: 533 LKLVD 537
>FUT7_ARATH (Q9XI81) Probable fucosyltransferase 7 (EC 2.4.1.-) (AtFUT7)| Length = 526 Score = 147 bits (370), Expect = 3e-35 Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 11/190 (5%) Frame = -2 Query: 553 SCVRREKLLPE--STSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGRVAGG--- 401 +C +REKLLPE + TN S+ +AVLVTSL+ Y ++ Y G Sbjct: 342 ACTQREKLLPEFAAQEEAQVTNTSNPSKLKAVLVTSLNPEYSNNLKKMYWEHPTTTGDIV 401 Query: 400 -VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPT 224 V+QPS E Q+ HD++AL+EMYLLS D LVT+ STFGYVAQGLGG++PWI+ Sbjct: 402 EVYQPSRERFQQTDKKLHDQKALAEMYLLSLTDKLVTSALSTFGYVAQGLGGLKPWIL-- 459 Query: 223 APIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDV-SW 47 T + P PPC R +S+EPCF +P + C A+K ++ K++P+VRHCED+ + Sbjct: 460 -----YTPKKFKSPNPPCGRVISMEPCFLTPPVHGCEAKKGINTAKIVPFVRHCEDLRHY 514 Query: 46 GIKIANESNH 17 G+K+ +++ + Sbjct: 515 GLKLVDDTKN 524
>FUT4_ARATH (Q9SJP2) Probable fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4)| Length = 503 Score = 138 bits (348), Expect = 9e-33 Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 10/186 (5%) Frame = -2 Query: 553 SCVRREKLLPE-STSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGRVAGG---- 401 SC +REKLLPE +T SK N S+ +AVLVTSLS Y +++ + + G Sbjct: 325 SCTQREKLLPELATQEESKVNISNIPKSKAVLVTSLSPEYSKKLENMFSERANMTGEIIK 384 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTA 221 V+QPS E Q+ HD++AL+EMYLLS D +V + STFGYVA LGG++PW++ Sbjct: 385 VYQPSGERYQQTDKKVHDQKALAEMYLLSLTDNIVASSRSTFGYVAYSLGGLKPWLL--- 441 Query: 220 PIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARK-DVDVGKVLPYVRHCEDVSWG 44 D P+PPCVR+ S+EPCF +P + C + GKV+P+VR+CED+ WG Sbjct: 442 ----YLPNDNKAPDPPCVRSTSMEPCFLTPPTHGCEPDAWGTESGKVVPFVRYCEDI-WG 496 Query: 43 IKIANE 26 +K+ +E Sbjct: 497 LKLFDE 502
>FUT10_ARATH (Q9SJP6) Putative fucosyltransferase 10 (EC 2.4.1.-) (AtFUT10)| Length = 514 Score = 137 bits (345), Expect = 2e-32 Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 8/178 (4%) Frame = -2 Query: 553 SCVRREKLLPESTSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGRVAGG----V 398 +C +REKLLPE SK N S + VLV SL Y + + + + G V Sbjct: 337 ACTQREKLLPEFEEE-SKVNISKPPKLKVVLVASLYPEYSVNLTNMFLARPSSTGEIIEV 395 Query: 397 HQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTAP 218 +QPS E Q+ SHD++AL+EMYLLS D +VT+G+STFGYV+ LGG++PW++ P Sbjct: 396 YQPSAERVQQTDKKSHDQKALAEMYLLSLTDNIVTSGWSTFGYVSYSLGGLKPWLL-YQP 454 Query: 217 IWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWG 44 + + P PPCVR+ S+EPC+H+P + C A + GK+LP+VRHCED+ +G Sbjct: 455 V------NFTTPNPPCVRSKSMEPCYHTPPSHGCEADWGTNSGKILPFVRHCEDMMYG 506
>FUT8_ARATH (Q9XI78) Probable fucosyltransferase 8 (EC 2.4.1.-) (AtFUT8)| Length = 500 Score = 134 bits (336), Expect = 2e-31 Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 9/186 (4%) Frame = -2 Query: 553 SCVRREKLLPES---TSSFSKTNASDQ--AVLVTSLSSWYYERIRDEYGGGRVAGG---- 401 +C +REKLLPE + + T+ S + AVLVTSL Y E +R Y G + G Sbjct: 326 ACTQREKLLPEVFVLETQVTNTSRSSKLKAVLVTSLYPEYSEILRQMYWKGPSSTGEIIQ 385 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTA 221 ++QPS E Q+ + HD++AL+E+YLLS D +VT+ STFGYVAQGLGG++PWI+ Sbjct: 386 IYQPSQEIYQQTDNKLHDQKALAEIYLLSLTDYIVTSDSSTFGYVAQGLGGLKPWIL--- 442 Query: 220 PIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGI 41 ++ PEPPCVRA+S+EPCF Y C A+K + P+V +CED G+ Sbjct: 443 ----YKPKNHTAPEPPCVRAVSMEPCFLRAPLYGCQAKK----VNITPFVMYCEDRITGL 494 Query: 40 KIANES 23 K+ + + Sbjct: 495 KLVDSN 500
>FUT5_ARATH (Q9SJP4) Probable fucosyltransferase 5 (EC 2.4.1.-) (AtFUT5)| Length = 533 Score = 132 bits (332), Expect = 7e-31 Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 12/188 (6%) Frame = -2 Query: 553 SCVRREKLLPE-STSSFSKTNASD----QAVLVTSLSSWYYERIRDEYGGGRVAGG---- 401 SC +REKLLPE +T SK N S ++VLV SL + + + + + G Sbjct: 354 SCTQREKLLPEFATPEESKVNISKTPKLKSVLVASLYPEFSGNLTNMFSKRPSSTGEIVE 413 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIM--P 227 V+QPS E Q+ SHD++AL+EMYLLS D +VT+ STFGYV+ LGG++PW++ P Sbjct: 414 VYQPSGERVQQTDKKSHDQKALAEMYLLSLTDNIVTSARSTFGYVSYSLGGLKPWLLYQP 473 Query: 226 TAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSW 47 T + P PPCVR+ S+EPC+ +P + C A + GK+LP+VRHCED+ + Sbjct: 474 T---------NFTTPNPPCVRSKSMEPCYLTPPSHGCEADWGTNSGKILPFVRHCEDLIY 524 Query: 46 -GIKIANE 26 G+K+ +E Sbjct: 525 GGLKLYDE 532
>FUT6_ARATH (Q9XI80) Fucosyltransferase 6 (EC 2.4.1.-) (AtFUT6)| Length = 537 Score = 129 bits (325), Expect = 4e-30 Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 12/188 (6%) Frame = -2 Query: 553 SCVRREKLLPESTSSFS-KTNASD----QAVLVTSLSSWYYERIRDEYGGGRVAGG---- 401 +C RRE LLPE + K N S +AVLVTSL Y E +++ Y + G Sbjct: 358 ACTRRENLLPEPAAQEEPKVNISRSQKLKAVLVTSLYPEYSETLKNMYWERPSSTGEIIE 417 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIM--P 227 V+QPS E Q+ HD++AL+EMYLLS D +VT+ STFGYVA LGG++PW++ P Sbjct: 418 VYQPSGERVQQTDKKLHDQKALAEMYLLSLTDKIVTSARSTFGYVAHSLGGLKPWLLYQP 477 Query: 226 TAPIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCED-VS 50 T P P+PPC+++ S++PC +P + C + GKV+P+VRHCED + Sbjct: 478 TGP---------TAPDPPCIQSTSMDPCHLTPPSHGCEPEWGTNSGKVVPFVRHCEDRGN 528 Query: 49 WGIKIANE 26 G+K+ +E Sbjct: 529 DGLKLFDE 536
>FUT9_ARATH (Q9XI77) Probable fucosyltransferase 9 (EC 2.4.1.-) (AtFUT9)| Length = 435 Score = 110 bits (276), Expect = 2e-24 Identities = 60/127 (47%), Positives = 79/127 (62%) Frame = -2 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTA 221 V+QPS E Q+ HD++AL+E+YLLS D LVT+ STFGYVAQGLGG++PWI+ Sbjct: 318 VYQPSGEKIQQTDKKLHDQKALAEIYLLSLTDELVTSTRSTFGYVAQGLGGLKPWIL--- 374 Query: 220 PIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDCTARKDVDVGKVLPYVRHCEDVSWGI 41 D P PPCVRAMS+EPCF + C A+ K+ P+VR CED G+ Sbjct: 375 ----YEPRDKKTPNPPCVRAMSMEPCFLRAPLHGCQAK----TIKIPPFVRICEDWKTGL 426 Query: 40 KIANESN 20 K+ + S+ Sbjct: 427 KLVDVSD 433
>FUT3_ARATH (Q9CA71) Probable fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3)| Length = 493 Score = 94.0 bits (232), Expect = 3e-19 Identities = 59/156 (37%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Frame = -2 Query: 553 SCVRREKLLPE-----STSSFSKTNASDQAVLVTSLSSWYYERIRDEYGGGRVAGG---- 401 +C R KLLPE + S N +AV ++S S Y++ IRD Y G Sbjct: 343 ACGTRHKLLPEVDKQRNLPSSQVLNRKSKAVFISSSSPGYFKSIRDVYWENPTVMGEIIS 402 Query: 400 VHQPSHEGQQKWGDTSHDKRALSEMYLLSTCDVLVTTG-FSTFGYVAQGLGGVRPWIMPT 224 VH+PS++ QK KRA +E+YLLS D LV TG +S+ VA GLGG++PW++ Sbjct: 403 VHKPSYKDYQKTPRNMESKRAWAEIYLLSCSDALVVTGLWSSLVEVAHGLGGLKPWVLNK 462 Query: 223 APIWSETKEDVPVPEPPCVRAMSVEPCFHSPSYYDC 116 A E+ EP CV+A S+EPC + ++ C Sbjct: 463 A-------ENGTAHEPYCVKARSIEPCSQATLFHGC 491
>TGM2_CHICK (Q01841) Protein-glutamine gamma-glutamyltransferase 2 (EC| 2.3.2.13) (Tissue transglutaminase) (TGase C) (TGC) (TG(C)) (Tranglutaminase-2) Length = 689 Score = 33.9 bits (76), Expect = 0.32 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -2 Query: 172 CVRAMSVEPCFHSPSYYDCTARKD-VDVGKVLPYVRHCEDVSWGIKIANESNHW 14 C+ + + P F DC+ R D V +G+V+ + +C D G+ + NH+ Sbjct: 193 CLEMLDINPKFLRDQNLDCSRRNDPVYIGRVVSAMVNCNDEDHGVLLGRWDNHY 246
>LCN12_MOUSE (Q6JVL5) Epididymal-specific lipocalin-12 precursor| Length = 193 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 18 WLLSLAILIPQLTSSQCRTYGSTFPTSTSFLAVQS**DGEW 140 W L L + +PQ+ SQ FP TSF + Q GEW Sbjct: 5 WALWLILTLPQILESQISAMSQGFPQMTSFQSDQF--QGEW 43
>INHBB_CHICK (P27093) Inhibin beta B chain precursor (Activin beta-B chain)| Length = 391 Score = 30.8 bits (68), Expect = 2.7 Identities = 30/123 (24%), Positives = 55/123 (44%) Frame = -2 Query: 499 TNASDQAVLVTSLSSWYYERIRDEYGGGRVAGGVHQPSHEGQQKWGDTSHDKRALSEMYL 320 T+A +A +VT+L + ++R++ G V PS +GQ G +HD +SE+ Sbjct: 79 THAVPKAAMVTALRKLHAGKVRED-------GRVEIPSLDGQASAGPPAHD--PVSEIIS 129 Query: 319 LSTCDVLVTTGFSTFGYVAQGLGGVRPWIMPTAPIWSETKEDVPVPEPPCVRAMSVEPCF 140 + D L ++ + +++ G + + A +W K V E R + V+ F Sbjct: 130 FAETDDLASSRVRLYFFISN--EGNQNLFVVQASLWLYLKLLPYVLEKGSRRKVRVKVYF 187 Query: 139 HSP 131 P Sbjct: 188 QDP 190
>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 868 Score = 30.4 bits (67), Expect = 3.5 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 21/103 (20%) Frame = -2 Query: 259 GLGGVRPWIMPTAPIWSETKEDVPVPEP--PCVRAMSV------EPCFHSPSYYDCTARK 104 G+ R W P + +T DVPVPE P + V P P +Y+C+ K Sbjct: 426 GISRQRYWGCPIPIVHCDTCGDVPVPEDQLPVILPEDVVPDGAGSPLARMPQFYECSCPK 485 Query: 103 ------------DVDVGKVLPYVRHCE-DVSWGIKIANESNHW 14 D V Y R+ G+ N +NHW Sbjct: 486 CGAPAKRETDTMDTFVESSWYYARYASPHYEGGLVEPNAANHW 528
>ZN272_HUMAN (Q14592) Zinc finger protein 272 (Zinc finger protein 460) (Zinc| finger protein HZF8) Length = 562 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2 Query: 376 QQKWGDTSHDKRALSEMYLLSTCDVLVTTGFST 278 Q++WG +RAL +L TC +LV G ST Sbjct: 24 QEEWGQLDVTQRALYVEVMLETCGLLVALGDST 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,587,961 Number of Sequences: 219361 Number of extensions: 1315473 Number of successful extensions: 5155 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5127 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
