Clone Name	rbags34i17
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK068069.1| Oryza sativa (japonica cultivar-group) cDNA clon...	672	0.0
2	ref|XM_472684.1| Oryza sativa (japonica cultivar-group), predic...	670	0.0
3	gb|AY104984.1| Zea mays PCO121949 mRNA sequence	563	e-157
4	emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,...	531	e-147
5	dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...	531	e-147
6	ref|XM_466373.1| Oryza sativa (japonica cultivar-group), mRNA	184	3e-43
7	ref|NM_187682.1| Oryza sativa (japonica cultivar-group), predic...	167	7e-38
8	dbj|AK069100.1| Oryza sativa (japonica cultivar-group) cDNA clon...	167	7e-38
9	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
10	dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
11	ref|NM_127796.2| Arabidopsis thaliana ATUBP4 (UBIQUITIN-SPECIFIC...	123	9e-25
12	gb|AY072625.1| Arabidopsis thaliana At2g22310/T26C19.3 mRNA, com...	123	9e-25
13	gb|AY048261.1| Arabidopsis thaliana At2g22310/T26C19.3 mRNA, com...	123	9e-25
14	gb|AY087731.1| Arabidopsis thaliana clone 38055 mRNA, complete s...	123	9e-25
15	gb|U76846.1|ATU76846 Arabidopsis thaliana ubiquitin-specific pro...	123	9e-25
16	ref|NM_179692.1| Arabidopsis thaliana calmodulin binding / trans...	119	1e-23
17	gb|AC007168.5| Arabidopsis thaliana chromosome 2 clone T26C19 ma...	119	1e-23
18	gb|BT014048.1| Lycopersicon esculentum clone 133145F, mRNA sequence	117	6e-23
19	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	107	5e-20
20	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	107	5e-20
21	gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome...	107	5e-20
22	gb|BT018399.1| Zea mays clone EL01N0323A06.d mRNA sequence	103	8e-19
23	gb|U76845.1|ATU76845 Arabidopsis thaliana ubiquitin-specific pro...	100	1e-17
24	ref|NM_120154.3| Arabidopsis thaliana ATUBP3 (UBIQUITIN-SPECIFIC...	98	5e-17
25	gb|AY079044.1| Arabidopsis thaliana AT4g39910/T5J17_80 mRNA, com...	98	5e-17
26	gb|AY058889.1| Arabidopsis thaliana AT4g39910/T5J17_80 mRNA, com...	98	5e-17
27	emb|BX826816.1|CNS0A42O Arabidopsis thaliana Full-length cDNA Co...	98	5e-17
28	emb|BX827142.1|CNS0A3OD Arabidopsis thaliana Full-length cDNA Co...	98	5e-17
29	gb|AY109971.1| Zea mays CL15956_1 mRNA sequence	94	8e-16
30	emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, ...	88	5e-14
31	emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BA...	88	5e-14
32	emb|CR677352.2|CNS0FLLW Tetraodon nigroviridis full-length cDNA	48	0.043
33	emb|AL360013.8| Human DNA sequence from clone RP11-103C3 on chro...	46	0.17
34	ref|XM_683013.1| PREDICTED: Danio rerio similar to ubiquitin spe...	46	0.17
35	gb|AY693019.1| Saccharomyces cerevisiae clone FLH158342.01X YPL2...	42	2.6
36	ref|XM_421391.1| PREDICTED: Gallus gallus similar to zinc finger...	42	2.6
37	gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, co...	42	2.6
38	emb|CR381676.9| Zebrafish DNA sequence from clone CH211-11J2 in ...	42	2.6
39	ref|XM_778338.1| PREDICTED: Strongylocentrotus purpuratus simila...	42	2.6
40	gb|AC022101.4| Homo sapiens chromosome 5 clone CTC-210G5, comple...	42	2.6
41	ref|XM_683267.1| PREDICTED: Danio rerio similar to Ubiquitin car...	42	2.6
42	emb|BX929409.2| Gallus gallus finished cDNA, clone ChEST189l8	42	2.6
43	emb|BX934691.1| Gallus gallus finished cDNA, clone ChEST846o22	42	2.6
44	gb|AC131012.3| Homo sapiens 12 BAC RP13-639L21 (Roswell Park Can...	42	2.6
45	gb|AY881982.1| Verticillium dahliae mitogen activated protein ki...	42	2.6
46	gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, comple...	42	2.6
47	emb|Z73611.1|SCYPL255W S.cerevisiae chromosome XVI reading frame...	42	2.6
48	emb|X92658.1|SCBBP1 S.cerevisiae BBP1 gene	42	2.6
49	gb|AY874359.1| Verticillium dahliae mitogen-activated protein ki...	42	2.6

---

>dbj|AK068069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134H10, full
            insert sequence
          Length = 1735

 Score =  672 bits (339), Expect = 0.0
 Identities = 468/509 (91%), Gaps = 4/509 (0%)
 Strand = Plus / Minus

                                                                        
Query: 246  gaaaatcaacctaaactcttcccaccaaggccctcgtaaaacaagatgtatccatgatct 305
            ||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| || 
Sbjct: 1474 gaaaatcaatctaa-ctcttcccaccaagaccctcataaaacaagatgtatccatggtcc 1416

                                                                        
Query: 306  gtgttgcctgagtactcatgcgaagaaccgaagaatgtttgcagggtcgactcttcaacc 365
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1415 gtgttgcctgagtattcatgtgaagaaccgaagaatgtttgcagggtcgactcctcaacc 1356

                                                                        
Query: 366  atctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacgaggctaaca 425
            ||||| || ||||||||||||||||||| |||||||||||||||||| || ||||| |||
Sbjct: 1355 atctcgacattttcatcatcgaagaacaaccagtggttgtggcttttgacaaggcttaca 1296

                                                                        
Query: 426  taatggccatggttggggccgcttccaacatggaccactacagcaaagagagaatactcg 485
            ||||| |||||||||||||| |||||||||||||| || ||||||||||| || ||||||
Sbjct: 1295 taatgtccatggttggggccacttccaacatggacaacgacagcaaagagggagtactcg 1236

                                                                        
Query: 486  gtatctacatcatcagatgtactgcccatcttcagctccatggggaatacaacccgatat 545
            ||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||
Sbjct: 1235 gtatctacatcatcagatgtactg---agcttcagctccattgggaatacaacccggtat 1179

                                                                        
Query: 546  gaaagcttcttataccgcccaagctgctcaatgtacttaaagcgctttaggtggatcacc 605
            ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || 
Sbjct: 1178 gaaagcttcttataccgaccaagctgctctatgtacttgaagcgctttaggtggataact 1119

                                                                        
Query: 606  aatatatggggagccttcttgatcttcattctcttctgtgcttcttgcaaactgcagcat 665
            ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1118 aatatgtgtggagccttcttgatcttcattctcttctgtgcttcttgcaagctgcagcat 1059

                                                                        
Query: 666  ttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaatttttcagg 725
            |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |
Sbjct: 1058 ttgtcacagaagaatttgtcctcagcatttaaagtctccgtggagcagaagtttttcaag 999

                                         
Query: 726  cagcttgtaatggaactattctgctcaat 754
            |||||||| || |||||||||||||||||
Sbjct: 998  cagcttgtgatagaactattctgctcaat 970



 Score =  123 bits (62), Expect = 9e-25
 Identities = 127/146 (86%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                        
Query: 73   ggagcaaggttccattttccgctgtacactagaaccacaaaaaatctggctttcctca-g 131
            |||||||||||||||| | | |||||||||| ||||||  ||||||  || | ||||| |
Sbjct: 1654 ggagcaaggttccattatgctctgtacactaaaaccacccaaaatccagcgt-cctcatg 1596

                                                                        
Query: 132  ttcgtactcacaatctctgagattaacaatttaccatggaggtgatgaaatagctgtgta 191
            ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||
Sbjct: 1595 ttcatactcacaatctctgagatcaacaattttccatggaggtaatgaaatagctgtgta 1536

                                      
Query: 192  catacaacagtaagcttgcatgctcc 217
             ||||||| |||  ||||||||||||
Sbjct: 1535 aatacaacggtattcttgcatgctcc 1510

---

>ref|XM_472684.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1098

 Score =  670 bits (338), Expect = 0.0
 Identities = 457/496 (92%), Gaps = 3/496 (0%)
 Strand = Plus / Minus

                                                                        
Query: 259  aactcttcccaccaaggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagt 318
            |||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1096 aactcttcccaccaagaccctcataaaacaagatgtatccatggtccgtgttgcctgagt 1037

                                                                        
Query: 319  actcatgcgaagaaccgaagaatgtttgcagggtcgactcttcaaccatctccacgtttt 378
            | ||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 1036 attcatgtgaagaaccgaagaatgtttgcagggtcgactcctcaaccatctcgacatttt 977

                                                                        
Query: 379  catcatcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggt 438
            ||||||||||||||| |||||||||||||||||| || ||||| |||||||| |||||||
Sbjct: 976  catcatcgaagaacaaccagtggttgtggcttttgacaaggcttacataatgtccatggt 917

                                                                        
Query: 439  tggggccgcttccaacatggaccactacagcaaagagagaatactcggtatctacatcat 498
            ||||||| |||||||||||||| || ||||||||||| || |||||||||||||||||||
Sbjct: 916  tggggccacttccaacatggacaacgacagcaaagagggagtactcggtatctacatcat 857

                                                                        
Query: 499  cagatgtactgcccatcttcagctccatggggaatacaacccgatatgaaagcttcttat 558
            |||||||||||   | |||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 856  cagatgtactg---agcttcagctccattgggaatacaacccggtatgaaagcttcttat 800

                                                                        
Query: 559  accgcccaagctgctcaatgtacttaaagcgctttaggtggatcaccaatatatggggag 618
            |||| ||||||||||| |||||||| ||||||||||||||||| || ||||| || ||||
Sbjct: 799  accgaccaagctgctctatgtacttgaagcgctttaggtggataactaatatgtgtggag 740

                                                                        
Query: 619  ccttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaaga 678
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 739  ccttcttgatcttcattctcttctgtgcttcttgcaagctgcagcatttgtcacagaaga 680

                                                                        
Query: 679  atttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgg 738
            ||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||| || |
Sbjct: 679  atttgtcctcagcatttaaagtctccgtggagcagaagtttttcaagcagcttgtgatag 620

                            
Query: 739  aactattctgctcaat 754
            ||||||||||||||||
Sbjct: 619  aactattctgctcaat 604

---

>gb|AY104984.1| Zea mays PCO121949 mRNA sequence
          Length = 1745

 Score =  563 bits (284), Expect = e-157
 Identities = 446/500 (89%)
 Strand = Plus / Minus

                                                                        
Query: 259  aactcttcccaccaaggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagt 318
            |||||||||||||||| ||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 1428 aactcttcccaccaagcccctcgtaaaacaagatatacccatggtccgtgttgcctgagt 1369

                                                                        
Query: 319  actcatgcgaagaaccgaagaatgtttgcagggtcgactcttcaaccatctccacgtttt 378
            | ||||| |||| ||||||||||||||| ||||||  ||||||||||||||| || ||||
Sbjct: 1368 attcatgtgaagtaccgaagaatgtttgtagggtctgctcttcaaccatctcgacatttt 1309

                                                                        
Query: 379  catcatcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggt 438
            |||| |||||||||| |||||||||||||||||| || ||||| |||||||| |||||||
Sbjct: 1308 catcgtcgaagaacaaccagtggttgtggcttttgacaaggcttacataatgcccatggt 1249

                                                                        
Query: 439  tggggccgcttccaacatggaccactacagcaaagagagaatactcggtatctacatcat 498
            | ||||| ||||| ||||||||||| ||||||||||| || ||||| || |||||||| |
Sbjct: 1248 tcgggccacttccgacatggaccacgacagcaaagagggagtactcagtgtctacatcgt 1189

                                                                        
Query: 499  cagatgtactgcccatcttcagctccatggggaatacaacccgatatgaaagcttcttat 558
            | |||| | | |  | |||||| |||||||||||||||||||  ||||||||||||||||
Sbjct: 1188 cggatgaattactgagcttcagttccatggggaatacaaccctgtatgaaagcttcttat 1129

                                                                        
Query: 559  accgcccaagctgctcaatgtacttaaagcgctttaggtggatcaccaatatatggggag 618
            |||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||||
Sbjct: 1128 accggccaagctgctcaatgtacttgaaacgctttagatggatcaccaatatgtggggag 1069

                                                                        
Query: 619  ccttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaaga 678
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 ccttcttaatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaaga 1009

                                                                        
Query: 679  atttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgg 738
            |||| ||||| |||||||||||||| || || | ||||||||||||||||||||| || |
Sbjct: 1008 atttatcctctgcatttaaagtctctgtagaacagaaatttttcaggcagcttgtgattg 949

                                
Query: 739  aactattctgctcaatgtca 758
            ||||||| || |||||||||
Sbjct: 948  aactattttgttcaatgtca 929

---

>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
              complete sequence
          Length = 175698

 Score =  531 bits (268), Expect = e-147
 Identities = 376/410 (91%), Gaps = 4/410 (0%)
 Strand = Plus / Plus

                                                                          
Query: 246    gaaaatcaacctaaactcttcccaccaaggccctcgtaaaacaagatgtatccatgatct 305
              ||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| || 
Sbjct: 146231 gaaaatcaatctaa-ctcttcccaccaagaccctcataaaacaagatgtatccatggtcc 146289

                                                                          
Query: 306    gtgttgcctgagtactcatgcgaagaaccgaagaatgtttgcagggtcgactcttcaacc 365
              |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 146290 gtgttgcctgagtattcatgtgaagaaccgaagaatgtttgcagggtcgactcctcaacc 146349

                                                                          
Query: 366    atctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacgaggctaaca 425
              ||||| || ||||||||||||||||||| |||||||||||||||||| || ||||| |||
Sbjct: 146350 atctcgacattttcatcatcgaagaacaaccagtggttgtggcttttgacaaggcttaca 146409

                                                                          
Query: 426    taatggccatggttggggccgcttccaacatggaccactacagcaaagagagaatactcg 485
              ||||| |||||||||||||| |||||||||||||| || ||||||||||| || ||||||
Sbjct: 146410 taatgtccatggttggggccacttccaacatggacaacgacagcaaagagggagtactcg 146469

                                                                          
Query: 486    gtatctacatcatcagatgtactgcccatcttcagctccatggggaatacaacccgatat 545
              ||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||
Sbjct: 146470 gtatctacatcatcagatgtactg---agcttcagctccattgggaatacaacccggtat 146526

                                                                          
Query: 546    gaaagcttcttataccgcccaagctgctcaatgtacttaaagcgctttaggtggatcacc 605
              ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || 
Sbjct: 146527 gaaagcttcttataccgaccaagctgctctatgtacttgaagcgctttaggtggataact 146586

                                                                
Query: 606    aatatatggggagccttcttgatcttcattctcttctgtgcttcttgcaa 655
              ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 146587 aatatgtgtggagccttcttgatcttcattctcttctgtgcttcttgcaa 146636



 Score =  147 bits (74), Expect = 6e-32
 Identities = 92/98 (93%)
 Strand = Plus / Plus

                                                                          
Query: 657    ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
              ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| 
Sbjct: 146936 ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctccgtggagcagaag 146995

                                                    
Query: 717    tttttcaggcagcttgtaatggaactattctgctcaat 754
              ||||||| ||||||||| || |||||||||||||||||
Sbjct: 146996 tttttcaagcagcttgtgatagaactattctgctcaat 147033



 Score =  123 bits (62), Expect = 9e-25
 Identities = 127/146 (86%), Gaps = 2/146 (1%)
 Strand = Plus / Plus

                                                                          
Query: 73     ggagcaaggttccattttccgctgtacactagaaccacaaaaaatctggctttcctca-g 131
              |||||||||||||||| | | |||||||||| ||||||  ||||||  || | ||||| |
Sbjct: 146051 ggagcaaggttccattatgctctgtacactaaaaccacccaaaatccagcgt-cctcatg 146109

                                                                          
Query: 132    ttcgtactcacaatctctgagattaacaatttaccatggaggtgatgaaatagctgtgta 191
              ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||
Sbjct: 146110 ttcatactcacaatctctgagatcaacaattttccatggaggtaatgaaatagctgtgta 146169

                                        
Query: 192    catacaacagtaagcttgcatgctcc 217
               ||||||| |||  ||||||||||||
Sbjct: 146170 aatacaacggtattcttgcatgctcc 146195

---

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  531 bits (268), Expect = e-147
 Identities = 376/410 (91%), Gaps = 4/410 (0%)
 Strand = Plus / Plus

                                                                            
Query: 246      gaaaatcaacctaaactcttcccaccaaggccctcgtaaaacaagatgtatccatgatct 305
                ||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| || 
Sbjct: 22542476 gaaaatcaatctaa-ctcttcccaccaagaccctcataaaacaagatgtatccatggtcc 22542534

                                                                            
Query: 306      gtgttgcctgagtactcatgcgaagaaccgaagaatgtttgcagggtcgactcttcaacc 365
                |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 22542535 gtgttgcctgagtattcatgtgaagaaccgaagaatgtttgcagggtcgactcctcaacc 22542594

                                                                            
Query: 366      atctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacgaggctaaca 425
                ||||| || ||||||||||||||||||| |||||||||||||||||| || ||||| |||
Sbjct: 22542595 atctcgacattttcatcatcgaagaacaaccagtggttgtggcttttgacaaggcttaca 22542654

                                                                            
Query: 426      taatggccatggttggggccgcttccaacatggaccactacagcaaagagagaatactcg 485
                ||||| |||||||||||||| |||||||||||||| || ||||||||||| || ||||||
Sbjct: 22542655 taatgtccatggttggggccacttccaacatggacaacgacagcaaagagggagtactcg 22542714

                                                                            
Query: 486      gtatctacatcatcagatgtactgcccatcttcagctccatggggaatacaacccgatat 545
                ||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||
Sbjct: 22542715 gtatctacatcatcagatgtactg---agcttcagctccattgggaatacaacccggtat 22542771

                                                                            
Query: 546      gaaagcttcttataccgcccaagctgctcaatgtacttaaagcgctttaggtggatcacc 605
                ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || 
Sbjct: 22542772 gaaagcttcttataccgaccaagctgctctatgtacttgaagcgctttaggtggataact 22542831

                                                                  
Query: 606      aatatatggggagccttcttgatcttcattctcttctgtgcttcttgcaa 655
                ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 22542832 aatatgtgtggagccttcttgatcttcattctcttctgtgcttcttgcaa 22542881



 Score =  147 bits (74), Expect = 6e-32
 Identities = 92/98 (93%)
 Strand = Plus / Plus

                                                                            
Query: 657      ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| 
Sbjct: 22543181 ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctccgtggagcagaag 22543240

                                                      
Query: 717      tttttcaggcagcttgtaatggaactattctgctcaat 754
                ||||||| ||||||||| || |||||||||||||||||
Sbjct: 22543241 tttttcaagcagcttgtgatagaactattctgctcaat 22543278



 Score =  123 bits (62), Expect = 9e-25
 Identities = 127/146 (86%), Gaps = 2/146 (1%)
 Strand = Plus / Plus

                                                                            
Query: 73       ggagcaaggttccattttccgctgtacactagaaccacaaaaaatctggctttcctca-g 131
                |||||||||||||||| | | |||||||||| ||||||  ||||||  || | ||||| |
Sbjct: 22542296 ggagcaaggttccattatgctctgtacactaaaaccacccaaaatccagcgt-cctcatg 22542354

                                                                            
Query: 132      ttcgtactcacaatctctgagattaacaatttaccatggaggtgatgaaatagctgtgta 191
                ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||
Sbjct: 22542355 ttcatactcacaatctctgagatcaacaattttccatggaggtaatgaaatagctgtgta 22542414

                                          
Query: 192      catacaacagtaagcttgcatgctcc 217
                 ||||||| |||  ||||||||||||
Sbjct: 22542415 aatacaacggtattcttgcatgctcc 22542440

---

>ref|XM_466373.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score =  184 bits (93), Expect = 3e-43
 Identities = 261/317 (82%)
 Strand = Plus / Minus

                                                                        
Query: 432  ccatggttggggccgcttccaacatggaccactacagcaaagagagaatactcggtatct 491
            ||||||||||||| ||| ||||||||||| || || |||||||| || ||||||   || 
Sbjct: 1070 ccatggttggggctgctcccaacatggactacaaccgcaaagagggagtactcgcagtca 1011

                                                                        
Query: 492  acatcatcagatgtactgcccatcttcagctccatggggaatacaacccgatatgaaagc 551
             | || |||||  | ||||||| ||||||||||| |||  |||| || || || || || 
Sbjct: 1010 gcgtcttcagacatgctgcccagcttcagctccaggggatataccactcggtacgacagt 951

                                                                        
Query: 552  ttcttataccgcccaagctgctcaatgtacttaaagcgctttaggtggatcaccaatata 611
            ||||| | ||| | ||||||||||| |||||| |||||||| ||||||||||||||||  
Sbjct: 950  ttcttgtgccggctaagctgctcaacgtacttgaagcgcttcaggtggatcaccaatacg 891

                                                                        
Query: 612  tggggagccttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtca 671
            || || |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 890  tgtggcgccttctttatcttcattctcttgtgtgcttcttgcaaactgctgcatttgtca 831

                                                                        
Query: 672  cagaagaatttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagctt 731
            || ||||| || |||||  |||||||| ||||||||||   |||  | ||||||||||||
Sbjct: 830  caaaagaacttatcctcgccatttaaaatctcagtggaaaagaagctcttcaggcagctt 771

                             
Query: 732  gtaatggaactattctg 748
            || |  |||||||||||
Sbjct: 770  gtgagcgaactattctg 754



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 261  ctcttcccaccaaggccctcgtaaaacaagatgtatccatgatctgtgttgcc 313
            |||||||||||||||| ||| || |||||||| || |||||||||||||||||
Sbjct: 1244 ctcttcccaccaaggcgctcatagaacaagatatagccatgatctgtgttgcc 1192

---

>ref|NM_187682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1101

 Score =  167 bits (84), Expect = 7e-38
 Identities = 198/236 (83%)
 Strand = Plus / Minus

                                                                       
Query: 519 agctccatggggaatacaacccgatatgaaagcttcttataccgcccaagctgctcaatg 578
           |||||||  ||||| ||||| |||||||| ||||| || || || |||||||| ||||| 
Sbjct: 839 agctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctgttcaata 780

                                                                       
Query: 579 tacttaaagcgctttaggtggatcaccaatatatggggagccttcttgatcttcattctc 638
           ||||| |||||||| || || || || |  || |  || |  ||||| ||||||||||| 
Sbjct: 779 tacttgaagcgcttgagatgaattacaagaatgtttggtggtttctttatcttcattctt 720

                                                                       
Query: 639 ttctgtgcttcttgcaaactgcagcatttgtcacagaagaatttgtcctcagcatttaaa 698
           ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
Sbjct: 719 ttctgtgcttcttgcaaactgcagcatttgtcacagaagaacttatcctcagcattcaga 660

                                                                   
Query: 699 gtctcagtggagctgaaatttttcaggcagcttgtaatggaactattctgctcaat 754
           |||||||| |||||||| ||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 659 gtctcagtcgagctgaagtttttaagacagctggtaattgaactattctgttcaat 604



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 384 tcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggttgggg 443
           |||||||||| ||||||||||||||| || || | ||| | ||| |||||||| || || 
Sbjct: 974 tcgaagaacaaccagtggttgtggctcttcactaagctgatatagtggccatgatttggt 915

                         
Query: 444 ccgcttccaacatg 457
           || |||||||||||
Sbjct: 914 ccacttccaacatg 901

---

>dbj|AK069100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004H19, full
            insert sequence
          Length = 1597

 Score =  167 bits (84), Expect = 7e-38
 Identities = 198/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 519  agctccatggggaatacaacccgatatgaaagcttcttataccgcccaagctgctcaatg 578
            |||||||  ||||| ||||| |||||||| ||||| || || || |||||||| ||||| 
Sbjct: 1018 agctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctgttcaata 959

                                                                        
Query: 579  tacttaaagcgctttaggtggatcaccaatatatggggagccttcttgatcttcattctc 638
            ||||| |||||||| || || || || |  || |  || |  ||||| ||||||||||| 
Sbjct: 958  tacttgaagcgcttgagatgaattacaagaatgtttggtggtttctttatcttcattctt 899

                                                                        
Query: 639  ttctgtgcttcttgcaaactgcagcatttgtcacagaagaatttgtcctcagcatttaaa 698
            ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
Sbjct: 898  ttctgtgcttcttgcaaactgcagcatttgtcacagaagaacttatcctcagcattcaga 839

                                                                    
Query: 699  gtctcagtggagctgaaatttttcaggcagcttgtaatggaactattctgctcaat 754
            |||||||| |||||||| ||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 838  gtctcagtcgagctgaagtttttaagacagctggtaattgaactattctgttcaat 783



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 384  tcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggttgggg 443
            |||||||||| ||||||||||||||| || || | ||| | ||| |||||||| || || 
Sbjct: 1153 tcgaagaacaaccagtggttgtggctcttcactaagctgatatagtggccatgatttggt 1094

                          
Query: 444  ccgcttccaacatg 457
            || |||||||||||
Sbjct: 1093 ccacttccaacatg 1080

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 188/228 (82%)
 Strand = Plus / Plus

                                                                            
Query: 432      ccatggttggggccgcttccaacatggaccactacagcaaagagagaatactcggtatct 491
                ||||||||||||| ||| ||||||||||| || || |||||||| || ||||||   || 
Sbjct: 22006728 ccatggttggggctgctcccaacatggactacaaccgcaaagagggagtactcgcagtca 22006787

                                                                            
Query: 492      acatcatcagatgtactgcccatcttcagctccatggggaatacaacccgatatgaaagc 551
                 | || |||||  | ||||||| ||||||||||| |||  |||| || || || || || 
Sbjct: 22006788 gcgtcttcagacatgctgcccagcttcagctccaggggatataccactcggtacgacagt 22006847

                                                                            
Query: 552      ttcttataccgcccaagctgctcaatgtacttaaagcgctttaggtggatcaccaatata 611
                ||||| | ||| | ||||||||||| |||||| |||||||| ||||||||||||||||  
Sbjct: 22006848 ttcttgtgccggctaagctgctcaacgtacttgaagcgcttcaggtggatcaccaatacg 22006907

                                                                
Query: 612      tggggagccttcttgatcttcattctcttctgtgcttcttgcaaactg 659
                || || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 22006908 tgtggcgccttctttatcttcattctcttgtgtgcttcttgcaaactg 22006955



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 261      ctcttcccaccaaggccctcgtaaaacaagatgtatccatgatctgtgttgcc 313
                |||||||||||||||| ||| || |||||||| || |||||||||||||||||
Sbjct: 22006554 ctcttcccaccaaggcgctcatagaacaagatatagccatgatctgtgttgcc 22006606



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                            
Query: 657      ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
                |||| |||||||||||| ||||| || |||||  |||||||| ||||||||||   ||| 
Sbjct: 22007260 ctgctgcatttgtcacaaaagaacttatcctcgccatttaaaatctcagtggaaaagaag 22007319

                                                
Query: 717      tttttcaggcagcttgtaatggaactattctg 748
                 | |||||||||||||| |  |||||||||||
Sbjct: 22007320 ctcttcaggcagcttgtgagcgaactattctg 22007351

---

>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score =  135 bits (68), Expect = 2e-28
 Identities = 188/228 (82%)
 Strand = Plus / Plus

                                                                         
Query: 432   ccatggttggggccgcttccaacatggaccactacagcaaagagagaatactcggtatct 491
             ||||||||||||| ||| ||||||||||| || || |||||||| || ||||||   || 
Sbjct: 55350 ccatggttggggctgctcccaacatggactacaaccgcaaagagggagtactcgcagtca 55409

                                                                         
Query: 492   acatcatcagatgtactgcccatcttcagctccatggggaatacaacccgatatgaaagc 551
              | || |||||  | ||||||| ||||||||||| |||  |||| || || || || || 
Sbjct: 55410 gcgtcttcagacatgctgcccagcttcagctccaggggatataccactcggtacgacagt 55469

                                                                         
Query: 552   ttcttataccgcccaagctgctcaatgtacttaaagcgctttaggtggatcaccaatata 611
             ||||| | ||| | ||||||||||| |||||| |||||||| ||||||||||||||||  
Sbjct: 55470 ttcttgtgccggctaagctgctcaacgtacttgaagcgcttcaggtggatcaccaatacg 55529

                                                             
Query: 612   tggggagccttcttgatcttcattctcttctgtgcttcttgcaaactg 659
             || || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 55530 tgtggcgccttctttatcttcattctcttgtgtgcttcttgcaaactg 55577



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 261   ctcttcccaccaaggccctcgtaaaacaagatgtatccatgatctgtgttgcc 313
             |||||||||||||||| ||| || |||||||| || |||||||||||||||||
Sbjct: 55176 ctcttcccaccaaggcgctcatagaacaagatatagccatgatctgtgttgcc 55228



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                         
Query: 657   ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
             |||| |||||||||||| ||||| || |||||  |||||||| ||||||||||   ||| 
Sbjct: 55882 ctgctgcatttgtcacaaaagaacttatcctcgccatttaaaatctcagtggaaaagaag 55941

                                             
Query: 717   tttttcaggcagcttgtaatggaactattctg 748
              | |||||||||||||| |  |||||||||||
Sbjct: 55942 ctcttcaggcagcttgtgagcgaactattctg 55973

---

>ref|NM_127796.2| Arabidopsis thaliana ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4);
           ubiquitin-specific protease AT2G22310 (ATUBP4) mRNA,
           complete cds
          Length = 1802

 Score =  123 bits (62), Expect = 9e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 621 ttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaat 680
           ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || 
Sbjct: 868 ttcttaatcttcattctcttctgcgcttcttgtaaactgcagcatttgtcacagaaaaac 809

                                                                       
Query: 681 ttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatggaa 740
           ||||| || |||| || |||||| ||||||||||| |||||||  ||||| || || |||
Sbjct: 808 ttgtcttctgcatgtagagtctctgtggagctgaagtttttcaaacagctagttatcgaa 749

                         
Query: 741 ctattctgctcaat 754
           || ||||| |||||
Sbjct: 748 ctgttctgttcaat 735



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
            |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 1219 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 1160

                                                                        
Query: 333  ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
            |||||||||||||| |  |  || |||||||  || || ||  | |||||||| ||||| 
Sbjct: 1159 ccgaagaatgtttgaacagcagattcttcaattatttcgacactctcatcatcaaagaag 1100

                                                                        
Query: 393  agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
            ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 1099 agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 1040

                                            
Query: 453  acatggaccactacagcaaagagagaatactc 484
            ||||| ||||| || ||||||||||| |||||
Sbjct: 1039 acatgaaccacgactgcaaagagagagtactc 1008

---

>gb|AY072625.1| Arabidopsis thaliana At2g22310/T26C19.3 mRNA, complete cds
          Length = 1098

 Score =  123 bits (62), Expect = 9e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 621 ttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaat 680
           ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || 
Sbjct: 734 ttcttaatcttcattctcttctgcgcttcttgtaaactgcagcatttgtcacagaaaaac 675

                                                                       
Query: 681 ttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatggaa 740
           ||||| || |||| || |||||| ||||||||||| |||||||  ||||| || || |||
Sbjct: 674 ttgtcttctgcatgtagagtctctgtggagctgaagtttttcaaacagctagttatcgaa 615

                         
Query: 741 ctattctgctcaat 754
           || ||||| |||||
Sbjct: 614 ctgttctgttcaat 601



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
            |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 1085 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 1026

                                                                        
Query: 333  ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
            |||||||||||||| |  |  || |||||||  || || ||  | |||||||| ||||| 
Sbjct: 1025 ccgaagaatgtttgaacagcagattcttcaattatttcgacactctcatcatcaaagaag 966

                                                                        
Query: 393  agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
            ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 965  agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 906

                                            
Query: 453  acatggaccactacagcaaagagagaatactc 484
            ||||| ||||| || ||||||||||| |||||
Sbjct: 905  acatgaaccacgactgcaaagagagagtactc 874

---

>gb|AY048261.1| Arabidopsis thaliana At2g22310/T26C19.3 mRNA, complete cds
          Length = 1318

 Score =  123 bits (62), Expect = 9e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 621 ttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaat 680
           ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || 
Sbjct: 843 ttcttaatcttcattctcttctgcgcttcttgtaaactgcagcatttgtcacagaaaaac 784

                                                                       
Query: 681 ttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatggaa 740
           ||||| || |||| || |||||| ||||||||||| |||||||  ||||| || || |||
Sbjct: 783 ttgtcttctgcatgtagagtctctgtggagctgaagtttttcaaacagctagttatcgaa 724

                         
Query: 741 ctattctgctcaat 754
           || ||||| |||||
Sbjct: 723 ctgttctgttcaat 710



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
            |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 1194 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 1135

                                                                        
Query: 333  ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
            |||||||||||||| |  |  || |||||||  || || ||  | |||||||| ||||| 
Sbjct: 1134 ccgaagaatgtttgaacagcagattcttcaattatttcgacactctcatcatcaaagaag 1075

                                                                        
Query: 393  agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
            ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 1074 agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 1015

                                            
Query: 453  acatggaccactacagcaaagagagaatactc 484
            ||||| ||||| || ||||||||||| |||||
Sbjct: 1014 acatgaaccacgactgcaaagagagagtactc 983

---

>gb|AY087731.1| Arabidopsis thaliana clone 38055 mRNA, complete sequence
          Length = 1338

 Score =  123 bits (62), Expect = 9e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 621 ttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaat 680
           ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || 
Sbjct: 868 ttcttaatcttcattctcttctgcgcttcttgtaaactgcagcatttgtcacagaaaaac 809

                                                                       
Query: 681 ttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatggaa 740
           ||||| || |||| || |||||| ||||||||||| |||||||  ||||| || || |||
Sbjct: 808 ttgtcttctgcatgtagagtctctgtggagctgaagtttttcaaacagctagttatcgaa 749

                         
Query: 741 ctattctgctcaat 754
           || ||||| |||||
Sbjct: 748 ctgttctgttcaat 735



 Score =  111 bits (56), Expect = 3e-21
 Identities = 173/212 (81%)
 Strand = Plus / Minus

                                                                        
Query: 273  aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
            |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 1219 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 1160

                                                                        
Query: 333  ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
            |||||||||||||| |  |  || | |||||  || || ||  | |||||||| ||||| 
Sbjct: 1159 ccgaagaatgtttgaacagcagatttttcaattatttcgacactctcatcatcaaagaag 1100

                                                                        
Query: 393  agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
            ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 1099 agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 1040

                                            
Query: 453  acatggaccactacagcaaagagagaatactc 484
            ||||| ||||| || ||||||||||| |||||
Sbjct: 1039 acatgaaccacgactgcaaagagagagtactc 1008

---

>gb|U76846.1|ATU76846 Arabidopsis thaliana ubiquitin-specific protease (AtUBP4) mRNA,
           complete cds
          Length = 1332

 Score =  123 bits (62), Expect = 9e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 621 ttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaat 680
           ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || 
Sbjct: 857 ttcttaatcttcattctcttctgcgcttcttgtaaactgcagcatttgtcacagaaaaac 798

                                                                       
Query: 681 ttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatggaa 740
           ||||| || |||| || |||||| ||||||||||| |||||||  ||||| || || |||
Sbjct: 797 ttgtcttctgcatgtagagtctctgtggagctgaagtttttcaaacagctagttatcgaa 738

                         
Query: 741 ctattctgctcaat 754
           || ||||| |||||
Sbjct: 737 ctgttctgttcaat 724



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
            |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 1208 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 1149

                                                                        
Query: 333  ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
            |||||||||||||| |  |  || |||||||  || || ||  | |||||||| ||||| 
Sbjct: 1148 ccgaagaatgtttgaacagcagattcttcaattatttcgacactctcatcatcaaagaag 1089

                                                                        
Query: 393  agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
            ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 1088 agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 1029

                                            
Query: 453  acatggaccactacagcaaagagagaatactc 484
            ||||| ||||| || ||||||||||| |||||
Sbjct: 1028 acatgaaccacgactgcaaagagagagtactc 997

---

>ref|NM_179692.1| Arabidopsis thaliana calmodulin binding / transcription regulator
            AT2G22300 mRNA, complete cds
          Length = 3901

 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 273  aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
            |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 3580 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 3639

                                                                        
Query: 333  ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
            |||||||||||||| |  |  || |||||||  || || ||  | |||||||| ||||| 
Sbjct: 3640 ccgaagaatgtttgaacagcagattcttcaattatttcgacactctcatcatcaaagaag 3699

                                                                        
Query: 393  agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
            ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 3700 agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 3759

                                            
Query: 453  acatggaccactacagcaaagagagaatactc 484
            ||||| ||||| || ||||||||||| |||||
Sbjct: 3760 acatgaaccacgactgcaaagagagagtactc 3791

---

>gb|AC007168.5| Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete
             sequence
          Length = 81236

 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                         
Query: 273   aggccctcgtaaaacaagatgtatccatgatctgtgttgcctgagtactcatgcgaagaa 332
             |||| |||||| ||||||||||| |||||||| || || | ||||||||| ||||| |||
Sbjct: 16296 aggctctcgtataacaagatgtagccatgatcagtattacttgagtactcttgcgatgaa 16237

                                                                         
Query: 333   ccgaagaatgtttgcagggtcgactcttcaaccatctccacgttttcatcatcgaagaac 392
             |||||||||||||| |  |  || |||||||  || || ||  | |||||||| ||||| 
Sbjct: 16236 ccgaagaatgtttgaacagcagattcttcaattatttcgacactctcatcatcaaagaag 16177

                                                                         
Query: 393   agccagtggttgtggcttttaacgaggctaacataatggccatggttggggccgcttcca 452
             ||||||||||| |||  ||| ||||||||||||||||| || ||||| || || ||||| 
Sbjct: 16176 agccagtggttatgggatttcacgaggctaacataatgaccgtggttaggtccacttccg 16117

                                             
Query: 453   acatggaccactacagcaaagagagaatactc 484
             ||||| ||||| || ||||||||||| |||||
Sbjct: 16116 acatgaaccacgactgcaaagagagagtactc 16085



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                         
Query: 657   ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
             |||||||||||||||||||| || ||||| || |||| || |||||| ||||||||||| 
Sbjct: 15820 ctgcagcatttgtcacagaaaaacttgtcttctgcatgtagagtctctgtggagctgaag 15761

                                                   
Query: 717   tttttcaggcagcttgtaatggaactattctgctcaat 754
             |||||||  ||||| || || ||||| ||||| |||||
Sbjct: 15760 tttttcaaacagctagttatcgaactgttctgttcaat 15723



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 621   ttcttgatcttcattctcttctgtgcttcttgcaaactgca 661
             ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 15945 ttcttaatcttcattctcttctgcgcttcttgtaaactgca 15905

---

>gb|BT014048.1| Lycopersicon esculentum clone 133145F, mRNA sequence
          Length = 1683

 Score =  117 bits (59), Expect = 6e-23
 Identities = 104/119 (87%)
 Strand = Plus / Minus

                                                                        
Query: 366  atctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacgaggctaaca 425
            |||||| |||| |||||||| ||||||| |||||||||||||||||| || || ||||||
Sbjct: 1076 atctccgcgttctcatcatcaaagaacaaccagtggttgtggcttttcacaagactaaca 1017

                                                                       
Query: 426  taatggccatggttggggccgcttccaacatggaccactacagcaaagagagaatactc 484
            ||||| |||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 1016 taatgcccatggtttggcccacttccgacatgaaccacaacagcaaatagagaatactc 958



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                       
Query: 621 ttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaat 680
           ||||| |||||||| |  || |||||||||||||| || || || ||||||||||| |||
Sbjct: 821 ttctttatcttcatccgtttttgtgcttcttgcaagctacaacacttgtcacagaaaaat 762

                                                                       
Query: 681 ttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatggaa 740
           |||||||| ||||| |  ||||| || || ||||||||||| |||||||||||||| |||
Sbjct: 761 ttgtcctctgcattgagggtctctgtagaactgaaattttttaggcagcttgtaattgaa 702

             
Query: 741 ct 742
           ||
Sbjct: 701 ct 700

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Plus

                                                                           
Query: 657     ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
               ||||||||||||||||||||||| || ||||||||||| | ||||||||| |||||||| 
Sbjct: 4697806 ctgcagcatttgtcacagaagaacttatcctcagcattcagagtctcagtcgagctgaag 4697865

                                                     
Query: 717     tttttcaggcagcttgtaatggaactattctgctcaat 754
               ||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 4697866 tttttaagacagctggtaattgaactattctgttcaat 4697903



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 114/141 (80%)
 Strand = Plus / Plus

                                                                           
Query: 519     agctccatggggaatacaacccgatatgaaagcttcttataccgcccaagctgctcaatg 578
               |||||||  ||||| ||||| |||||||| ||||| || || || |||||||| ||||| 
Sbjct: 4697420 agctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctgttcaata 4697479

                                                                           
Query: 579     tacttaaagcgctttaggtggatcaccaatatatggggagccttcttgatcttcattctc 638
               ||||| |||||||| || || || || |  || |  || |  ||||| ||||||||||| 
Sbjct: 4697480 tacttgaagcgcttgagatgaattacaagaatgtttggtggtttctttatcttcattctt 4697539

                                    
Query: 639     ttctgtgcttcttgcaaactg 659
               |||||||||||||||||||||
Sbjct: 4697540 ttctgtgcttcttgcaaactg 4697560



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                           
Query: 384     tcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggttgggg 443
               |||||||||| ||||||||||||||| || || | ||| | ||| |||||||| || || 
Sbjct: 4697285 tcgaagaacaaccagtggttgtggctcttcactaagctgatatagtggccatgatttggt 4697344

                             
Query: 444     ccgcttccaacatg 457
               || |||||||||||
Sbjct: 4697345 ccacttccaacatg 4697358

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Plus

                                                                           
Query: 657     ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
               ||||||||||||||||||||||| || ||||||||||| | ||||||||| |||||||| 
Sbjct: 4697921 ctgcagcatttgtcacagaagaacttatcctcagcattcagagtctcagtcgagctgaag 4697980

                                                     
Query: 717     tttttcaggcagcttgtaatggaactattctgctcaat 754
               ||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 4697981 tttttaagacagctggtaattgaactattctgttcaat 4698018



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 114/141 (80%)
 Strand = Plus / Plus

                                                                           
Query: 519     agctccatggggaatacaacccgatatgaaagcttcttataccgcccaagctgctcaatg 578
               |||||||  ||||| ||||| |||||||| ||||| || || || |||||||| ||||| 
Sbjct: 4697535 agctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctgttcaata 4697594

                                                                           
Query: 579     tacttaaagcgctttaggtggatcaccaatatatggggagccttcttgatcttcattctc 638
               ||||| |||||||| || || || || |  || |  || |  ||||| ||||||||||| 
Sbjct: 4697595 tacttgaagcgcttgagatgaattacaagaatgtttggtggtttctttatcttcattctt 4697654

                                    
Query: 639     ttctgtgcttcttgcaaactg 659
               |||||||||||||||||||||
Sbjct: 4697655 ttctgtgcttcttgcaaactg 4697675



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                           
Query: 384     tcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggttgggg 443
               |||||||||| ||||||||||||||| || || | ||| | ||| |||||||| || || 
Sbjct: 4697400 tcgaagaacaaccagtggttgtggctcttcactaagctgatatagtggccatgatttggt 4697459

                             
Query: 444     ccgcttccaacatg 457
               || |||||||||||
Sbjct: 4697460 ccacttccaacatg 4697473

---

>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09,
              complete sequence
          Length = 148894

 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Plus

                                                                          
Query: 657    ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
              ||||||||||||||||||||||| || ||||||||||| | ||||||||| |||||||| 
Sbjct: 138761 ctgcagcatttgtcacagaagaacttatcctcagcattcagagtctcagtcgagctgaag 138820

                                                    
Query: 717    tttttcaggcagcttgtaatggaactattctgctcaat 754
              ||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 138821 tttttaagacagctggtaattgaactattctgttcaat 138858



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 114/141 (80%)
 Strand = Plus / Plus

                                                                          
Query: 519    agctccatggggaatacaacccgatatgaaagcttcttataccgcccaagctgctcaatg 578
              |||||||  ||||| ||||| |||||||| ||||| || || || |||||||| ||||| 
Sbjct: 138375 agctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctgttcaata 138434

                                                                          
Query: 579    tacttaaagcgctttaggtggatcaccaatatatggggagccttcttgatcttcattctc 638
              ||||| |||||||| || || || || |  || |  || |  ||||| ||||||||||| 
Sbjct: 138435 tacttgaagcgcttgagatgaattacaagaatgtttggtggtttctttatcttcattctt 138494

                                   
Query: 639    ttctgtgcttcttgcaaactg 659
              |||||||||||||||||||||
Sbjct: 138495 ttctgtgcttcttgcaaactg 138515



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                          
Query: 384    tcgaagaacagccagtggttgtggcttttaacgaggctaacataatggccatggttgggg 443
              |||||||||| ||||||||||||||| || || | ||| | ||| |||||||| || || 
Sbjct: 138240 tcgaagaacaaccagtggttgtggctcttcactaagctgatatagtggccatgatttggt 138299

                            
Query: 444    ccgcttccaacatg 457
              || |||||||||||
Sbjct: 138300 ccacttccaacatg 138313

---

>gb|BT018399.1| Zea mays clone EL01N0323A06.d mRNA sequence
          Length = 1503

 Score =  103 bits (52), Expect = 8e-19
 Identities = 100/116 (86%)
 Strand = Plus / Minus

                                                                       
Query: 642 tgtgcttcttgcaaactgcagcatttgtcacagaagaatttgtcctcagcatttaaagtc 701
           |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 791 tgtgcttcctgcaaactgcagcatttgtcacagaagaacttgtcctctgcattcaaagtc 732

                                                                   
Query: 702 tcagtggagctgaaatttttcaggcagcttgtaatggaactattctgctcaatgtc 757
           || || |||||||| || || || ||||| || |  ||||||||||| || |||||
Sbjct: 731 tctgttgagctgaagttcttaagacagctggtgagtgaactattctgttcgatgtc 676



 Score = 48.1 bits (24), Expect = 0.043
 Identities = 87/108 (80%)
 Strand = Plus / Minus

                                                                        
Query: 365  catctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacgaggctaac 424
            |||||| ||||| || ||||| ||||| | ||| || |||||||| ||||| |  || | 
Sbjct: 1069 catctcaacgttctcgtcatcaaagaataaccaatgattgtggctcttaaccaaactgat 1010

                                                            
Query: 425  ataatggccatggttggggccgcttccaacatggaccactacagcaaa 472
            ||| ||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 1009 atagtggccatggtttggcccacttccaacatgaactaccacagcaaa 962

---

>gb|U76845.1|ATU76845 Arabidopsis thaliana ubiquitin-specific protease (AtUBP3) mRNA,
            complete cds
          Length = 1542

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 185/230 (80%)
 Strand = Plus / Minus

                                                                        
Query: 519  agctccatggggaatacaacccgatatgaaagcttcttataccgcccaagctgctcaatg 578
            |||||||  ||||| ||||| | ||| || |||||||| || || || ||||| ||||||
Sbjct: 1023 agctccaaagggaagacaactctataggagagcttcttgtagcggcctagctgttcaatg 964

                                                                        
Query: 579  tacttaaagcgctttaggtggatcaccaatatatggggagccttcttgatcttcattctc 638
            || || || || ||||| || ||||| |  || || || | ||||||||||||||| | |
Sbjct: 963  tatttgaatcgttttagatgaatcactaggatgtgtggtggcttcttgatcttcatccgc 904

                                                                        
Query: 639  ttctgtgcttcttgcaaactgcagcatttgtcacagaagaatttgtcctcagcatttaaa 698
            || ||||||||||| || ||||||||||||||||| ||||||||||| ||||| |  |  
Sbjct: 903  ttttgtgcttcttgtaagctgcagcatttgtcacaaaagaatttgtcttcagcgtgaagc 844

                                                              
Query: 699  gtctcagtggagctgaaatttttcaggcagcttgtaatggaactattctg 748
            ||||| ||||||||||| |||||||  ||||| || || ||||| |||||
Sbjct: 843  gtctctgtggagctgaagtttttcaaacagctagttatcgaactgttctg 794



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
            ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 1188 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 1129

                                                                        
Query: 417  aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
            ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 1128 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 1069

                    
Query: 477  gaatactc 484
            || |||||
Sbjct: 1068 gagtactc 1061

---

>ref|NM_120154.3| Arabidopsis thaliana ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3);
           ubiquitin-specific protease AT4G39910 (ATUBP3) mRNA,
           complete cds
          Length = 1586

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                       
Query: 620 cttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaa 679
           ||||||||||||||| | ||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 937 cttcttgatcttcatccgcttttgtgcttcttgtaagctgcagcatttgtcacaaaagaa 878

                                                                       
Query: 680 tttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgga 739
           |||||| ||||| |  |  ||||| ||||||||||| |||||||  ||||| || || ||
Sbjct: 877 tttgtcttcagcgtgaagcgtctctgtggagctgaagtttttcaaacagctagttatcga 818

                    
Query: 740 actattctg 748
           ||| |||||
Sbjct: 817 actgttctg 809



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
            ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 1203 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 1144

                                                                        
Query: 417  aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
            ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 1143 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 1084

                    
Query: 477  gaatactc 484
            || |||||
Sbjct: 1083 gagtactc 1076

---

>gb|AY079044.1| Arabidopsis thaliana AT4g39910/T5J17_80 mRNA, complete cds
          Length = 1116

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                       
Query: 620 cttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaa 679
           ||||||||||||||| | ||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 750 cttcttgatcttcatccgcttttgtgcttcttgtaagctgcagcatttgtcacaaaagaa 691

                                                                       
Query: 680 tttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgga 739
           |||||| ||||| |  |  ||||| ||||||||||| |||||||  ||||| || || ||
Sbjct: 690 tttgtcttcagcgtgaagcgtctctgtggagctgaagtttttcaaacagctagttatcga 631

                    
Query: 740 actattctg 748
           ||| |||||
Sbjct: 630 actgttctg 622



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
            ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 1016 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 957

                                                                        
Query: 417  aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
            ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 956  aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 897

                    
Query: 477  gaatactc 484
            || |||||
Sbjct: 896  gagtactc 889

---

>gb|AY058889.1| Arabidopsis thaliana AT4g39910/T5J17_80 mRNA, complete cds
          Length = 1426

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                       
Query: 620 cttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaa 679
           ||||||||||||||| | ||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 879 cttcttgatcttcatccgcttttgtgcttcttgtaagctgcagcatttgtcacaaaagaa 820

                                                                       
Query: 680 tttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgga 739
           |||||| ||||| |  |  ||||| ||||||||||| |||||||  ||||| || || ||
Sbjct: 819 tttgtcttcagcgtgaagcgtctctgtggagctgaagtttttcaaacagctagttatcga 760

                    
Query: 740 actattctg 748
           ||| |||||
Sbjct: 759 actgttctg 751



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
            ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 1145 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 1086

                                                                        
Query: 417  aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
            ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 1085 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 1026

                    
Query: 477  gaatactc 484
            || |||||
Sbjct: 1025 gagtactc 1018

---

>emb|BX826816.1|CNS0A42O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB64ZH07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1301

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                       
Query: 620 cttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaa 679
           ||||||||||||||| | ||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 912 cttcttgatcttcatccgcttttgtgcttcttgtaagctgcagcatttgtcacaaaagaa 853

                                                                       
Query: 680 tttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgga 739
           |||||| ||||| |  |  ||||| ||||||||||| |||||||  ||||| || || ||
Sbjct: 852 tttgtcttcagcgtgaagcgtctctgtggagctgaagtttttcaaacagctagttatcga 793

                    
Query: 740 actattctg 748
           ||| |||||
Sbjct: 792 actgttctg 784



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
            ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 1178 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 1119

                                                                        
Query: 417  aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
            ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 1118 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 1059

                    
Query: 477  gaatactc 484
            || |||||
Sbjct: 1058 gagtactc 1051

---

>emb|BX827142.1|CNS0A3OD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS14ZF02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1556

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                       
Query: 620 cttcttgatcttcattctcttctgtgcttcttgcaaactgcagcatttgtcacagaagaa 679
           ||||||||||||||| | ||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 937 cttcttgatcttcatccgcttttgtgcttcttgtaagctgcagcatttgtcacaaaagaa 878

                                                                       
Query: 680 tttgtcctcagcatttaaagtctcagtggagctgaaatttttcaggcagcttgtaatgga 739
           |||||| ||||| |  |  ||||| ||||||||||| |||||||  ||||| || || ||
Sbjct: 877 tttgtcttcagcgtgaagcgtctctgtggagctgaagtttttcaaacagctagttatcga 818

                    
Query: 740 actattctg 748
           ||| |||||
Sbjct: 817 actgttctg 809



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 357  tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
            ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 1203 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 1144

                                                                        
Query: 417  aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
            ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 1143 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 1084

                    
Query: 477  gaatactc 484
            || |||||
Sbjct: 1083 gagtactc 1076

---

>gb|AY109971.1| Zea mays CL15956_1 mRNA sequence
          Length = 1420

 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 651 tgcaaactgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggag 710
           ||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||
Sbjct: 689 tgcaaactgcagcatttgtcacagaagaacttgtcctctgcattcaaagtctctgttgag 748

                                                          
Query: 711 ctgaaatttttcaggcagcttgtaatggaactattctgctcaatgtc 757
           ||||| || || || ||||| || |  ||||||||||| || |||||
Sbjct: 749 ctgaagttcttaagacagctggtgagtgaactattctgttcgatgtc 795



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                       
Query: 365 catctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacgaggctaac 424
           |||||| ||||| || ||||| ||||| | ||| || |||||||| ||||| |  || | 
Sbjct: 403 catctcaacgttctcgtcatcaaagaataaccaatgattgtggctcttaaccaaactgat 462

                                            
Query: 425 ataatggccatggttggggccgcttccaacatg 457
           ||| ||||||||||| || || |||||||||||
Sbjct: 463 atagtggccatggtttggcccacttccaacatg 495

---

>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92
          Length = 112067

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                         
Query: 357   tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
             ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 38977 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 39036

                                                                         
Query: 417   aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
             ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 39037 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 39096

                     
Query: 477   gaatactc 484
             || |||||
Sbjct: 39097 gagtactc 39104



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                         
Query: 657   ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
             ||||||||||||||||| ||||||||||| ||||| |  |  ||||| ||||||||||| 
Sbjct: 39447 ctgcagcatttgtcacaaaagaatttgtcttcagcgtgaagcgtctctgtggagctgaag 39506

                                             
Query: 717   tttttcaggcagcttgtaatggaactattctg 748
             |||||||  ||||| || || ||||| |||||
Sbjct: 39507 tttttcaaacagctagttatcgaactgttctg 39538



 Score = 44.1 bits (22), Expect = 0.67
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 620   cttcttgatcttcattctcttctgtgcttcttgcaaactgca 661
             ||||||||||||||| | ||| ||||||||||| || |||||
Sbjct: 39243 cttcttgatcttcatccgcttttgtgcttcttgtaagctgca 39284

---

>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project)
          Length = 118267

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                         
Query: 357   tcttcaaccatctccacgttttcatcatcgaagaacagccagtggttgtggcttttaacg 416
             ||||||| |||||| || || |||||||| ||||| ||||| ||||| |||||||| || 
Sbjct: 49544 tcttcaatcatctcaacattctcatcatcaaagaagagccaatggttatggcttttcaca 49603

                                                                         
Query: 417   aggctaacataatggccatggttggggccgcttccaacatggaccactacagcaaagaga 476
             ||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||
Sbjct: 49604 aggcttacgtaatgaccatggttgggtccacttcccacatgaaccaccactgcaaacaga 49663

                     
Query: 477   gaatactc 484
             || |||||
Sbjct: 49664 gagtactc 49671



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                         
Query: 657   ctgcagcatttgtcacagaagaatttgtcctcagcatttaaagtctcagtggagctgaaa 716
             ||||||||||||||||| ||||||||||| ||||| |  |  ||||| ||||||||||| 
Sbjct: 50014 ctgcagcatttgtcacaaaagaatttgtcttcagcgtgaagcgtctctgtggagctgaag 50073

                                             
Query: 717   tttttcaggcagcttgtaatggaactattctg 748
             |||||||  ||||| || || ||||| |||||
Sbjct: 50074 tttttcaaacagctagttatcgaactgttctg 50105



 Score = 44.1 bits (22), Expect = 0.67
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 620   cttcttgatcttcattctcttctgtgcttcttgcaaactgca 661
             ||||||||||||||| | ||| ||||||||||| || |||||
Sbjct: 49810 cttcttgatcttcatccgcttttgtgcttcttgtaagctgca 49851

---

>emb|CR677352.2|CNS0FLLW Tetraodon nigroviridis full-length cDNA
          Length = 2093

 Score = 48.1 bits (24), Expect = 0.043
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 567  agctgctcaatgtacttaaagcgctttaggtg 598
            |||||||| ||||||||||||||||| |||||
Sbjct: 1075 agctgctccatgtacttaaagcgcttcaggtg 1044

---

>emb|AL360013.8| Human DNA sequence from clone RP11-103C3 on chromosome 1 Contains a
             novel gene and a solute carrier family 35 member E3
             (SLC35E3) pseudogene, complete sequence
          Length = 155157

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 392   cagccagtggttgtggcttttaa 414
             |||||||||||||||||||||||
Sbjct: 70899 cagccagtggttgtggcttttaa 70877

---

>ref|XM_683013.1| PREDICTED: Danio rerio similar to ubiquitin specific protease 46
           (LOC559652), mRNA
          Length = 1185

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 566 aagctgctcaatgtacttaaagcgctt 592
           ||||||||| |||||||||||||||||
Sbjct: 876 aagctgctccatgtacttaaagcgctt 850

---

>gb|AY693019.1| Saccharomyces cerevisiae clone FLH158342.01X YPL255W gene, complete
           cds
          Length = 1158

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 458 gaccactacagcaaagagagaatac 482
           |||||| ||||||||||||||||||
Sbjct: 307 gaccaccacagcaaagagagaatac 331

---

>ref|XM_421391.1| PREDICTED: Gallus gallus similar to zinc finger, FYVE domain
           containing 21; hypothetical protein MGC2550 (LOC423486),
           mRNA
          Length = 1475

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 657 ctgcagcatttgtcacagaag 677
           |||||||||||||||||||||
Sbjct: 251 ctgcagcatttgtcacagaag 231

---

>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence
          Length = 181674

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 678   aatttgtcctcagcatttaaa 698
             |||||||||||||||||||||
Sbjct: 49925 aatttgtcctcagcatttaaa 49945

---

>emb|CR381676.9| Zebrafish DNA sequence from clone CH211-11J2 in linkage group 7,
             complete sequence
          Length = 200769

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 566   aagctgctcaatgtacttaaagcgctttaggtg 598
             |||||| || || ||||||||||||||||||||
Sbjct: 96063 aagctggtccatatacttaaagcgctttaggtg 96095

---

>ref|XM_778338.1| PREDICTED: Strongylocentrotus purpuratus similar to Ubiquitin
           carboxyl-terminal hydrolase 12 (Ubiquitin thiolesterase
           12) (Ubiquitin-specific processing protease 12)
           (Deubiquitinating enzyme 12) (Ubiquitin hydrolyzing
           enzyme 1) (LOC578149), mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 632 cattctcttctgtgcttcttg 652
           |||||||||||||||||||||
Sbjct: 720 cattctcttctgtgcttcttg 700

---

>gb|AC022101.4| Homo sapiens chromosome 5 clone CTC-210G5, complete sequence
          Length = 173691

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 276    ccctcgtaaaacaagatgtatccat 300
              |||||||||||||| ||||||||||
Sbjct: 125624 ccctcgtaaaacaaaatgtatccat 125600

---

>ref|XM_683267.1| PREDICTED: Danio rerio similar to Ubiquitin carboxyl-terminal
            hydrolase 12 (Ubiquitin thiolesterase 12)
            (Ubiquitin-specific processing protease 12)
            (Deubiquitinating enzyme 12) (Ubiquitin hydrolyzing
            enzyme 1) (LOC559878), mRNA
          Length = 1455

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 566  aagctgctcaatgtacttaaagcgctttaggtg 598
            |||||| || || ||||||||||||||||||||
Sbjct: 1146 aagctggtccatatacttaaagcgctttaggtg 1114

---

>emb|BX929409.2| Gallus gallus finished cDNA, clone ChEST189l8
          Length = 1321

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 657 ctgcagcatttgtcacagaag 677
           |||||||||||||||||||||
Sbjct: 96  ctgcagcatttgtcacagaag 76

---

>emb|BX934691.1| Gallus gallus finished cDNA, clone ChEST846o22
          Length = 1252

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 657 ctgcagcatttgtcacagaag 677
           |||||||||||||||||||||
Sbjct: 252 ctgcagcatttgtcacagaag 232

---

>gb|AC131012.3| Homo sapiens 12 BAC RP13-639L21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 21399

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 178   gaaatagctgtgtacatacaacagt 202
             |||||| ||||||||||||||||||
Sbjct: 15802 gaaatatctgtgtacatacaacagt 15826

---

>gb|AY881982.1| Verticillium dahliae mitogen activated protein kinase 1 (k1) gene,
            complete cds
          Length = 2289

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  tgatctgtgttgcctgagtactcat 324
            ||||||||||||| |||||||||||
Sbjct: 2099 tgatctgtgttgcatgagtactcat 2123

---

>gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, complete sequence
          Length = 206646

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 678    aatttgtcctcagcatttaaa 698
              |||||||||||||||||||||
Sbjct: 204636 aatttgtcctcagcatttaaa 204656

---

>emb|Z73611.1|SCYPL255W S.cerevisiae chromosome XVI reading frame ORF YPL255w
          Length = 2870

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 458  gaccactacagcaaagagagaatac 482
            |||||| ||||||||||||||||||
Sbjct: 1417 gaccaccacagcaaagagagaatac 1441

---

>emb|X92658.1|SCBBP1 S.cerevisiae BBP1 gene
          Length = 1668

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 458 gaccactacagcaaagagagaatac 482
           |||||| ||||||||||||||||||
Sbjct: 622 gaccaccacagcaaagagagaatac 646

---

>gb|AY874359.1| Verticillium dahliae mitogen-activated protein kinase (vmk1) gene,
            complete cds
          Length = 2815

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  tgatctgtgttgcctgagtactcat 324
            ||||||||||||| |||||||||||
Sbjct: 2573 tgatctgtgttgcatgagtactcat 2597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,688,731
Number of Sequences: 3902068
Number of extensions: 6688731
Number of successful extensions: 134362
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134110
Number of HSP's gapped (non-prelim): 230
length of query: 758
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 735
effective length of database: 17,143,297,704
effective search space: 12600323812440
effective search space used: 12600323812440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

---