ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34i13 |
|---|---|
| Clone Library Name | barley_pub |
>YD22_SCHPO (Q10250) Hypothetical protein C56F8.02 in chromosome I| Length = 1517 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Frame = +3 Query: 51 YAQLGFASPTYLSMLHTTTDQ--AATNRSLESP-ITWPTQLTKWKPKLFHSFYNQLMPKL 221 Y +L T + L TTD A R L + + WP + WK F F+ + ++ Sbjct: 257 YNELSSILTTTSARLALTTDANLKAFQRDLNAKKLHWPKNVEWWKTNEFGGFHLKKKAEM 316 Query: 222 PPCSTPHTTYFLF 260 PP P Y F Sbjct: 317 PPLQVPDLAYIEF 329
>TGB2_WCMVO (P15404) TGB2 protein (Triple gene block 2 protein) (TGBp2) (13 kDa| protein) (ORF 3 protein) Length = 117 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +2 Query: 131 PRITHHLAN----PAYQMETKTISFFLQPIDAKASTLLYSAYNILSVFSIMPHLSALHSQ 298 P++ HL N Y+ TKTI +F +P S L ++N I+ + LH Sbjct: 36 PKVGDHLHNLPFGGEYKDGTKTIKYFQRPNQHSLSKTLAKSHNTTIFLIILGLIGTLHGL 95 Query: 299 YYLS 310 +Y S Sbjct: 96 HYFS 99
>T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T2R34)| Length = 298 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = +2 Query: 71 ITYLSLHATHHNRPSRY*PKPRITHHLANPAYQMETKTISFFLQPIDAKASTLLYSAYNI 250 I L H RY +PR TH + A+ M K+++FFL + Y++Y + Sbjct: 192 IILLMFSLYRHLEQMRY-HRPR-THDYSTQAHIMALKSLAFFL---------IFYTSYTL 240 Query: 251 LSVFSIMPHLSALHSQYYLSW 313 L S+ H+ +H ++ +W Sbjct: 241 LLTVSV-AHVINVHGSWHWAW 260
>GORS2_MOUSE (Q99JX3) Golgi reassembly stacking protein 2 (GRS2) (Golgi| reassembly stacking protein of 55 kDa) (GRASP55) Length = 450 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 15/64 (23%) Frame = +1 Query: 301 LPELDSSVTAPGPSFPPDNVES---------------LL*EGVVAAAASELDSSVTATGP 435 LPEL S P PS PP N+ L+ EG AA+A E SS+ A GP Sbjct: 336 LPELGSPGLPPLPSLPPRNLPGIAPLPMLSDFLPSFPLVPEGSSAASAGEPLSSLPAMGP 395 Query: 436 SLPP 447 P Sbjct: 396 PSDP 399
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +1 Query: 16 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPQQTKPLLTEASNHPSLGQPSLPNGNQNY 186 +GKN+ E ++ ++ V+++ ++P Q P+ + SNH L S PN + Sbjct: 92 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYIQFSNHKELKTDSSPNQARAQ 148 Query: 187 FILSTTN*CQSFHLAL 234 L N QS +LAL Sbjct: 149 AALQAVNSVQSGNLAL 164
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +1 Query: 16 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPQQTKPLLTEASNHPSLGQPSLPNGNQNY 186 +GKN+ E ++ ++ V+++ ++P Q P+ + SNH L S PN + Sbjct: 92 KGKNQAFIEMHTEEAANTMVNYYTSVTPVLRGQ---PIYIQFSNHKELKTDSSPNQARAQ 148 Query: 187 FILSTTN*CQSFHLAL 234 L N QS +LAL Sbjct: 149 AALQAVNSVQSGNLAL 164
>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 557 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +1 Query: 16 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPQQTKPLLTEASNHPSLGQPSLPNGNQNY 186 +GKN+ E ++ ++ V+++ ++P Q P+ + SNH L S PN + Sbjct: 92 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYIQFSNHKELKTDSSPNQARAQ 148 Query: 187 FILSTTN*CQSFHLAL 234 L N QS +LAL Sbjct: 149 AALQAVNSVQSGNLAL 164
>GORS2_RAT (Q9R064) Golgi reassembly stacking protein 2 (GRS2) (Golgi| reassembly stacking protein of 55 kDa) (GRASP55) Length = 453 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 15/64 (23%) Frame = +1 Query: 301 LPELDSSVTAPGPSFPPDNVES---------------LL*EGVVAAAASELDSSVTATGP 435 LPEL P PS PP NV L+ EG AA+A E SS+ A GP Sbjct: 336 LPELGKPGLPPLPSLPPRNVPGIAPLPMPSDFLPSFPLVPEGSSAASAGEPLSSLPAMGP 395 Query: 436 SLPP 447 P Sbjct: 396 PSDP 399
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +1 Query: 16 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPQQTKPLLTEASNHPSLGQPSLPNGNQNY 186 +GKN+ E ++ ++ V+++ ++P Q P+ + SNH L S PN + Sbjct: 91 KGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQ---PIYIQFSNHKELKTDSSPNQARAQ 147 Query: 187 FILSTTN*CQSFHLAL 234 L N QS +LAL Sbjct: 148 AALQAVNSVQSGNLAL 163
>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 527 Score = 30.4 bits (67), Expect = 4.1 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +1 Query: 16 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPQQTKPLLTEASNHPSLGQPSLPNGNQNY 186 +GKN+ E ++ ++ V+++ ++P Q P+ + SNH L S PN + Sbjct: 91 KGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQ---PIYIQFSNHKELKTDSSPNQVRAQ 147 Query: 187 FILSTTN*CQSFHLAL 234 L N QS +LAL Sbjct: 148 AALQAVNSVQSGNLAL 163
>AIP1_YEAST (P46680) Actin-interacting protein 1| Length = 615 Score = 29.6 bits (65), Expect = 6.9 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +2 Query: 251 LSVFSIMPHLSALHSQYYLSWTPPSRHQDHHSLLIMLSH 367 ++ ++ P +S + + W+ S HQDH +L++ L + Sbjct: 342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,367,409 Number of Sequences: 219361 Number of extensions: 1530637 Number of successful extensions: 4673 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4668 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
