| Clone Name | rbags34i03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463918.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2037 Score = 109 bits (55), Expect = 1e-20 Identities = 171/211 (81%), Gaps = 9/211 (4%) Strand = Plus / Minus Query: 355 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 414 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 1684 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1625 Query: 415 ctccgcgttgccaccgg---------ggttctcttttaggtacaactccttgtatgatcc 465 |||||| | |||| ||| ||||||| || ||||| | ||||||||| ||||| Sbjct: 1624 ctccgcctcgccagcggcgagccccgggttctccttgaggtatagctccttgtacgatcc 1565 Query: 466 gtccaggccatcttgcgcttcgtccttggcactgcccatgtcatcccaaagtctcaagat 525 ||||| || ||||| || || |||||||||||||||| ||||||||| ||||||||||| Sbjct: 1564 gtccaatccttcttgtgcctcatccttggcactgcccaggtcatcccagagtctcaagat 1505 Query: 526 ctttgacgggcaggagattatcggagggatg 556 |||| ||||||||||| | ||||||||| Sbjct: 1504 ttttgctgggcaggagatgacaggagggatg 1474
>dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full insert sequence Length = 2037 Score = 109 bits (55), Expect = 1e-20 Identities = 171/211 (81%), Gaps = 9/211 (4%) Strand = Plus / Minus Query: 355 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 414 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 1684 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1625 Query: 415 ctccgcgttgccaccgg---------ggttctcttttaggtacaactccttgtatgatcc 465 |||||| | |||| ||| ||||||| || ||||| | ||||||||| ||||| Sbjct: 1624 ctccgcctcgccagcggcgagccccgggttctccttgaggtatagctccttgtacgatcc 1565 Query: 466 gtccaggccatcttgcgcttcgtccttggcactgcccatgtcatcccaaagtctcaagat 525 ||||| || ||||| || || |||||||||||||||| ||||||||| ||||||||||| Sbjct: 1564 gtccaatccttcttgtgcctcatccttggcactgcccaggtcatcccagagtctcaagat 1505 Query: 526 ctttgacgggcaggagattatcggagggatg 556 |||| ||||||||||| | ||||||||| Sbjct: 1504 ttttgctgggcaggagatgacaggagggatg 1474
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 489 ccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||| | | Sbjct: 1150093 ccttggcactgcccaggtcatcccagagtctcaagatttttgctgggcaggagatgacag 1150034 Query: 549 gagggatg 556 |||||||| Sbjct: 1150033 gagggatg 1150026 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 355 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 414 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 1150699 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1150640 Query: 415 ctccgc 420 |||||| Sbjct: 1150639 ctccgc 1150634
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 489 ccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||| | | Sbjct: 102617 ccttggcactgcccaggtcatcccagagtctcaagatttttgctgggcaggagatgacag 102558 Query: 549 gagggatg 556 |||||||| Sbjct: 102557 gagggatg 102550 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 355 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 414 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 103223 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 103164 Query: 415 ctccgc 420 |||||| Sbjct: 103163 ctccgc 103158
>gb|AY928082.1| Zea mays cultivar B73 terpene synthase 3 (TPS3) mRNA, complete cds Length = 1725 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 357 agaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgc 412 |||||||||| |||||||||||| ||||||| ||| ||||||| | ||||||||| Sbjct: 1588 agaagcactccctgttgagctccacccactccctcgcgatcaggccgcgcatgtgc 1533 Score = 40.1 bits (20), Expect = 8.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 497 ctgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||||||||||||| || || | |||||| | ||||||||||| |||| Sbjct: 1439 ctgcccatgtcatcccagagcctgaggatcttggctgggcaggagatgatcg 1388
>ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative monoterpene synthase (OSJNBb0049A16.6), mRNA Length = 1407 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 488 tccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatc 547 |||||||| |||| ||||||||||| ||||| ||||| |||| ||||||||||| | Sbjct: 1142 tccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcaggagatgaca 1083 Query: 548 ggagggatg 556 ||||||||| Sbjct: 1082 ggagggatg 1074 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 443 aggtacaactccttgtatgatccgtcca 470 ||||||||||||||||||||||| |||| Sbjct: 1175 aggtacaactccttgtatgatccatcca 1148
>gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence Length = 58734 Score = 48.1 bits (24), Expect = 0.036 Identities = 57/68 (83%) Strand = Plus / Plus Query: 489 ccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||| |||| ||||||||||| ||||| ||||| |||| ||||||||||| | | Sbjct: 30209 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcaggagatgacag 30268 Query: 549 gagggatg 556 |||||||| Sbjct: 30269 gagggatg 30276 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Plus Query: 443 aggtacaactccttgtatgatccgtcca 470 ||||||||||||||||||||||| |||| Sbjct: 29890 aggtacaactccttgtatgatccatcca 29917
>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence Length = 129585 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 443 aggtacaactccttgtatgatccgtcca 470 ||||||||||||||||||||||| |||| Sbjct: 3276 aggtacaactccttgtatgatccatcca 3249 Score = 48.1 bits (24), Expect = 0.036 Identities = 57/68 (83%) Strand = Plus / Minus Query: 489 ccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||| |||| ||||||||||| ||||| ||||| |||| ||||||||||| | | Sbjct: 2957 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcaggagatgacag 2898 Query: 549 gagggatg 556 |||||||| Sbjct: 2897 gagggatg 2890
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.036 Identities = 57/68 (83%) Strand = Plus / Plus Query: 489 ccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||| |||| ||||||||||| ||||| ||||| |||| ||||||||||| | | Sbjct: 18058076 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcaggagatgacag 18058135 Query: 549 gagggatg 556 |||||||| Sbjct: 18058136 gagggatg 18058143 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Plus Query: 443 aggtacaactccttgtatgatccgtcca 470 ||||||||||||||||||||||| |||| Sbjct: 18057757 aggtacaactccttgtatgatccatcca 18057784
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.036 Identities = 57/68 (83%) Strand = Plus / Plus Query: 489 ccttggcactgcccatgtcatcccaaagtctcaagatctttgacgggcaggagattatcg 548 ||||||| |||| ||||||||||| ||||| ||||| |||| ||||||||||| | | Sbjct: 18067329 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcaggagatgacag 18067388 Query: 549 gagggatg 556 |||||||| Sbjct: 18067389 gagggatg 18067396 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Plus Query: 443 aggtacaactccttgtatgatccgtcca 470 ||||||||||||||||||||||| |||| Sbjct: 18067010 aggtacaactccttgtatgatccatcca 18067037
>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence Length = 152510 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 174 tttgctctggttctgtcatcctctag 199 |||||||| ||||||||||||||||| Sbjct: 45525 tttgctctagttctgtcatcctctag 45550
>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence Length = 158340 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 174 tttgctctggttctgtcatcctctag 199 |||||||| ||||||||||||||||| Sbjct: 132530 tttgctctagttctgtcatcctctag 132555
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 237 tccttatgtactcctcaaggac 258 |||||||||||||||||||||| Sbjct: 1106500 tccttatgtactcctcaaggac 1106479
>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a novel gene and the 3' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9), complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 aaaaccccagctttgctctgg 183 ||||||||||||||||||||| Sbjct: 113516 aaaaccccagctttgctctgg 113536
>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence Length = 193158 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ttctgtcatcctctagattc 203 |||||||||||||||||||| Sbjct: 2826 ttctgtcatcctctagattc 2807
>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence Length = 259091 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ttctgtcatcctctagattc 203 |||||||||||||||||||| Sbjct: 186163 ttctgtcatcctctagattc 186144
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tagtcaatgttagaaaagtttgac 108 |||||||||||| ||||||||||| Sbjct: 55862 tagtcaatgttataaaagtttgac 55885
>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079N13, complete sequence Length = 140946 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tagtcaatgttagaaaagtttgac 108 |||||||||||| ||||||||||| Sbjct: 134958 tagtcaatgttataaaagtttgac 134981
>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence Length = 235095 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 catgattcataacaggagca 236 |||||||||||||||||||| Sbjct: 9012 catgattcataacaggagca 9031
>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3 Contains the 5' end of the SRPX gene for a chromosome X sushi-repeat-containing protein, a novel gene, the RPGR gene for retinitis pigmentosa GTPase regulator, the 5' end of the OTC gene for ornithine carbamoyltransferase and two CpG islands, complete sequence Length = 141577 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gggaaaaccccagctttgct 179 |||||||||||||||||||| Sbjct: 37331 gggaaaaccccagctttgct 37350
>emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chromosome 6 Contains part of the gene for androgen induced protein (AIG-1) (CGI-103) (includes FLJ10485), complete sequence Length = 121029 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aaatttccacttcaccacta 69 |||||||||||||||||||| Sbjct: 26054 aaatttccacttcaccacta 26035
>emb|AL136228.8| Human DNA sequence from clone RP1-66H9 on chromosome 6 Contains two CpG islands, complete sequence Length = 92460 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cccagctttgctctggttct 187 |||||||||||||||||||| Sbjct: 51981 cccagctttgctctggttct 52000
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 tcccgatcagcgcccgcatgtgcc 413 ||||||||||||||||||| |||| Sbjct: 226494 tcccgatcagcgcccgcatttgcc 226517
>gb|AC107051.4| Homo sapiens BAC clone RP11-224D4 from 4, complete sequence Length = 57025 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 catggaaaagagatgcacaa 623 |||||||||||||||||||| Sbjct: 29282 catggaaaagagatgcacaa 29301
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gaagatataaaatttccact 60 |||||||||||||||||||| Sbjct: 1142215 gaagatataaaatttccact 1142196
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tagtcaatgttagaaaagtttgac 108 |||||||||||| ||||||||||| Sbjct: 15883264 tagtcaatgttataaaagtttgac 15883287
>ref|NM_214522.1| Strongylocentrotus purpuratus creatine kinase (TCK), mRNA Length = 3985 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ttgggaagatataaaatttc 56 |||||||||||||||||||| Sbjct: 3840 ttgggaagatataaaatttc 3859
>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence Length = 39360 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gaaggcccgcctggagaagc 362 |||||||||||||||||||| Sbjct: 3569 gaaggcccgcctggagaagc 3588
>gb|AY871214.1| Oikopleura dioica Hox1 (Hox1) gene, partial cds Length = 3843 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 tcccaaagtctcaagatctt 528 |||||||||||||||||||| Sbjct: 3486 tcccaaagtctcaagatctt 3467
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tagtcaatgttagaaaagtttgac 108 |||||||||||| ||||||||||| Sbjct: 15970640 tagtcaatgttataaaagtttgac 15970663
>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07, complete sequence Length = 167895 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gaagatataaaatttccact 60 |||||||||||||||||||| Sbjct: 84597 gaagatataaaatttccact 84578
>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence Length = 192261 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 catgattcataacaggagca 236 |||||||||||||||||||| Sbjct: 116891 catgattcataacaggagca 116872
>gb|M33763.1|SUSFCK S.purpuratus flagellar creatine kinase mRNA, complete cds Length = 3985 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ttgggaagatataaaatttc 56 |||||||||||||||||||| Sbjct: 3840 ttgggaagatataaaatttc 3859
>emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chromosome 2, complete sequence Length = 110275 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 aaagtctcaagatctttgac 532 |||||||||||||||||||| Sbjct: 41735 aaagtctcaagatctttgac 41754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,445,295 Number of Sequences: 3902068 Number of extensions: 4445295 Number of successful extensions: 83450 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83227 Number of HSP's gapped (non-prelim): 223 length of query: 635 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 612 effective length of database: 17,143,297,704 effective search space: 10491698194848 effective search space used: 10491698194848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)