ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100854.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 178 2e-41
3dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 178 2e-41
4ref|NM_104227.1| Arabidopsis thaliana DNA binding AT1G53490 mRNA... 113 8e-22
5gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC cl... 109 1e-20
6emb|BX814259.1|CNS0AC33 Arabidopsis thaliana Full-length cDNA Co... 98 5e-17
7gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22... 98 5e-17
8gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thali... 98 5e-17
9dbj|AK108775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
10emb|AL080243.21|HSBA12M9 Human DNA sequence from clone RP11-12M9... 42 2.4
11gb|AE012032.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 2.4
12gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 42 2.4
13emb|BX936436.13| Zebrafish DNA sequence from clone DKEY-16H19 in... 40 9.7
14ref|XM_381495.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 9.7
15ref|XM_949747.1| Theileria annulata strain Ankara protein kinase... 40 9.7
16gb|AF099923.2| Caenorhabditis elegans fosmid H09G03, complete se... 40 9.7
17gb|AC123976.23| Medicago truncatula clone mth2-30j23, complete s... 40 9.7
18gb|AC126780.18| Medicago truncatula clone mth2-10n4, complete se... 40 9.7
19emb|BX901979.16| Zebrafish DNA sequence from clone DKEY-74C10 in... 40 9.7
20gb|AC095055.3| Homo sapiens BAC clone RP11-372K14 from 4, comple... 40 9.7
21dbj|AK032710.1| Mus musculus 12 days embryo male wolffian duct i... 40 9.7
22gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Ca... 40 9.7
23gb|AF210453.1|AF210453 Drosophila melanogaster dynein heavy chai... 40 9.7
24emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in... 40 9.7
25gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 m... 40 9.7
26emb|CR407557.10| Zebrafish DNA sequence from clone DKEYP-66B8 in... 40 9.7
27gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome ... 40 9.7
28emb|AL845471.7| Mouse DNA sequence from clone RP23-320N1 on chro... 40 9.7

>dbj|AK100854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123K05, full
            insert sequence
          Length = 1310

 Score =  365 bits (184), Expect = 1e-97
 Identities = 420/498 (84%), Gaps = 3/498 (0%)
 Strand = Plus / Minus

                                                                        
Query: 212  acgtgaacatttgtggacggttacggg---gctgaggacgcttcactggtgagattatca 268
            |||||||||| ||||||||||| ||||   |||||||||| ||||| || ||||||||||
Sbjct: 1229 acgtgaacatatgtggacggtttcgggaaagctgaggacgtttcacaggcgagattatca 1170

                                                                        
Query: 269  tatttctcagagctgtcgaagaattgttcatgttagctccaaagacggaccgtggcagct 328
            |||||| ||||||||  |||| ||| ||||||  ||  || || |||| |||||   |||
Sbjct: 1169 tatttcgcagagctgcagaagtattattcatggcagtgccgaatacgggccgtgctggct 1110

                                                                        
Query: 329  gtcggggtctcatatccatcggaggtgcagcagtgtgaccaggcgaccccccagagagct 388
            ||| ||| || ||||| | |||||| || ||| ||||| |||| || ||| |||| ||||
Sbjct: 1109 gtctgggcctaatatcaaccggaggcgccgcattgtgagcaggagatcccgcagacagct 1050

                                                                        
Query: 389  caaatggaccagagttctcacgtcgttgccttggttgtggagcccatccctcatctctgc 448
            ||||||| |||||| |    || |||||||||||| |||||||||||||||||||||| |
Sbjct: 1049 caaatggtccagaggtggaccgacgttgccttggtggtggagcccatccctcatctctcc 990

                                                                        
Query: 449  gccctggggtttcaggaggatcaattgatccttgtctcagtgggtcaccgctgtccaata 508
            ||||||| ||||||||| || ||    ||||||||||||| ||||| | ||| |||| ||
Sbjct: 989  gccctggagtttcaggaagaccagccaatccttgtctcagagggtcgctgctatccatta 930

                                                                        
Query: 509  tgttaggcatgcctgagaacaagtgaggctgagctctcgggaagtagttgtttgcaggtt 568
            |||| |||| ||||||||||| ||  ||||| ||||| |||||||||||||| |||||||
Sbjct: 929  tgttgggcacgcctgagaacaggtctggctgggctcttgggaagtagttgttcgcaggtt 870

                                                                        
Query: 569  gaatggctgaacgtttcaccgactcatactcgtttctcagctgatcatacatctcatcaa 628
            |||| |||||||| ||  |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 869  gaattgctgaacgctttgccgactcatactcgcttctcagctgatcatacatctcatcaa 810

                                                                        
Query: 629  gcttcctcttttgcctggatttctctgcaaatttttcttgtaactcctgcttatcccttg 688
            ||||||| || |||||||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct: 809  gcttccttttctgcctggatttctcagcaaatttttcttgtagctcttgcttatccctcg 750

                              
Query: 689  tcaagttttcaatctctt 706
             ||||||||||| |||||
Sbjct: 749  acaagttttcaacctctt 732



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  178 bits (90), Expect = 2e-41
 Identities = 150/170 (88%)
 Strand = Plus / Plus

                                                                           
Query: 478     ccttgtctcagtgggtcaccgctgtccaatatgttaggcatgcctgagaacaagtgaggc 537
               ||||||||||| ||||| | ||| |||| |||||| |||| ||||||||||| ||  |||
Sbjct: 7467125 ccttgtctcagagggtcgctgctatccattatgttgggcacgcctgagaacaggtctggc 7467184

                                                                           
Query: 538     tgagctctcgggaagtagttgtttgcaggttgaatggctgaacgtttcaccgactcatac 597
               || ||||| |||||||||||||| ||||||||||| |||||||| ||  |||||||||||
Sbjct: 7467185 tgggctcttgggaagtagttgttcgcaggttgaattgctgaacgctttgccgactcatac 7467244

                                                                 
Query: 598     tcgtttctcagctgatcatacatctcatcaagcttcctcttttgcctgga 647
               ||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 7467245 tcgcttctcagctgatcatacatctcatcaagcttccttttctgcctgga 7467294



 Score =  141 bits (71), Expect = 4e-30
 Identities = 211/257 (82%), Gaps = 3/257 (1%)
 Strand = Plus / Plus

                                                                           
Query: 212     acgtgaacatttgtggacggttacggg---gctgaggacgcttcactggtgagattatca 268
               |||||||||| ||||||||||| ||||   |||||||||| ||||| || ||||||||||
Sbjct: 7466654 acgtgaacatatgtggacggtttcgggaaagctgaggacgtttcacaggcgagattatca 7466713

                                                                           
Query: 269     tatttctcagagctgtcgaagaattgttcatgttagctccaaagacggaccgtggcagct 328
               |||||| ||||||||  |||| ||| ||||||  ||  || || |||| |||||   |||
Sbjct: 7466714 tatttcgcagagctgcagaagtattattcatggcagtgccgaatacgggccgtgctggct 7466773

                                                                           
Query: 329     gtcggggtctcatatccatcggaggtgcagcagtgtgaccaggcgaccccccagagagct 388
               ||| ||| || ||||| | |||||| || ||| ||||| |||| || ||| |||| ||||
Sbjct: 7466774 gtctgggcctaatatcaaccggaggcgccgcattgtgagcaggagatcccgcagacagct 7466833

                                                                           
Query: 389     caaatggaccagagttctcacgtcgttgccttggttgtggagcccatccctcatctctgc 448
               ||||||| |||||| |    || |||||||||||| |||||||||||||||||||||| |
Sbjct: 7466834 caaatggtccagaggtggaccgacgttgccttggtggtggagcccatccctcatctctcc 7466893

                                
Query: 449     gccctggggtttcagga 465
               ||||||| |||||||||
Sbjct: 7466894 gccctggagtttcagga 7466910



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                           
Query: 642     cctggatttctctgcaaatttttcttgtaactcctgcttatcccttgtcaagttttcaat 701
               |||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||| 
Sbjct: 7467384 cctggatttctcagcaaatttttcttgtagctcttgcttatccctcgacaagttttcaac 7467443

                    
Query: 702     ctctt 706
               |||||
Sbjct: 7467444 ctctt 7467448



to top

>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score =  178 bits (90), Expect = 2e-41
 Identities = 150/170 (88%)
 Strand = Plus / Plus

                                                                         
Query: 478   ccttgtctcagtgggtcaccgctgtccaatatgttaggcatgcctgagaacaagtgaggc 537
             ||||||||||| ||||| | ||| |||| |||||| |||| ||||||||||| ||  |||
Sbjct: 60831 ccttgtctcagagggtcgctgctatccattatgttgggcacgcctgagaacaggtctggc 60890

                                                                         
Query: 538   tgagctctcgggaagtagttgtttgcaggttgaatggctgaacgtttcaccgactcatac 597
             || ||||| |||||||||||||| ||||||||||| |||||||| ||  |||||||||||
Sbjct: 60891 tgggctcttgggaagtagttgttcgcaggttgaattgctgaacgctttgccgactcatac 60950

                                                               
Query: 598   tcgtttctcagctgatcatacatctcatcaagcttcctcttttgcctgga 647
             ||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 60951 tcgcttctcagctgatcatacatctcatcaagcttccttttctgcctgga 61000



 Score =  141 bits (71), Expect = 4e-30
 Identities = 211/257 (82%), Gaps = 3/257 (1%)
 Strand = Plus / Plus

                                                                         
Query: 212   acgtgaacatttgtggacggttacggg---gctgaggacgcttcactggtgagattatca 268
             |||||||||| ||||||||||| ||||   |||||||||| ||||| || ||||||||||
Sbjct: 60360 acgtgaacatatgtggacggtttcgggaaagctgaggacgtttcacaggcgagattatca 60419

                                                                         
Query: 269   tatttctcagagctgtcgaagaattgttcatgttagctccaaagacggaccgtggcagct 328
             |||||| ||||||||  |||| ||| ||||||  ||  || || |||| |||||   |||
Sbjct: 60420 tatttcgcagagctgcagaagtattattcatggcagtgccgaatacgggccgtgctggct 60479

                                                                         
Query: 329   gtcggggtctcatatccatcggaggtgcagcagtgtgaccaggcgaccccccagagagct 388
             ||| ||| || ||||| | |||||| || ||| ||||| |||| || ||| |||| ||||
Sbjct: 60480 gtctgggcctaatatcaaccggaggcgccgcattgtgagcaggagatcccgcagacagct 60539

                                                                         
Query: 389   caaatggaccagagttctcacgtcgttgccttggttgtggagcccatccctcatctctgc 448
             ||||||| |||||| |    || |||||||||||| |||||||||||||||||||||| |
Sbjct: 60540 caaatggtccagaggtggaccgacgttgccttggtggtggagcccatccctcatctctcc 60599

                              
Query: 449   gccctggggtttcagga 465
             ||||||| |||||||||
Sbjct: 60600 gccctggagtttcagga 60616



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 642   cctggatttctctgcaaatttttcttgtaactcctgcttatcccttgtcaagttttcaat 701
             |||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||| 
Sbjct: 61090 cctggatttctcagcaaatttttcttgtagctcttgcttatccctcgacaagttttcaac 61149

                  
Query: 702   ctctt 706
             |||||
Sbjct: 61150 ctctt 61154



to top

>ref|NM_104227.1| Arabidopsis thaliana DNA binding AT1G53490 mRNA, complete cds
          Length = 690

 Score =  113 bits (57), Expect = 8e-22
 Identities = 123/145 (84%)
 Strand = Plus / Minus

                                                                       
Query: 554 agttgtttgcaggttgaatggctgaacgtttcaccgactcatactcgtttctcagctgat 613
           |||||||||| ||||| ||||||| |||||| || |||||||||||  |||| ||||| |
Sbjct: 343 agttgtttgctggttggatggctgtacgtttaactgactcatactcacttcttagctggt 284

                                                                       
Query: 614 catacatctcatcaagcttcctcttttgcctggatttctctgcaaatttttcttgtaact 673
           ||||||||||||||||||||||||| || || |||||||| |  || || ||||| | ||
Sbjct: 283 catacatctcatcaagcttcctcttctgtcttgatttctcagagaacttctcttggagct 224

                                    
Query: 674 cctgcttatcccttgtcaagttttc 698
           | ||||||||| | |||||||||||
Sbjct: 223 cttgcttatccttggtcaagttttc 199



to top

>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04,
             complete sequence
          Length = 107631

 Score =  109 bits (55), Expect = 1e-20
 Identities = 112/131 (85%)
 Strand = Plus / Plus

                                                                         
Query: 514   ggcatgcctgagaacaagtgaggctgagctctcgggaagtagttgtttgcaggttgaatg 573
             ||||||||||  |||||||  ||||||| ||| |  |||||||| ||||||||||||| |
Sbjct: 72385 ggcatgcctgcaaacaagtctggctgaggtcttgctaagtagttatttgcaggttgaagg 72444

                                                                         
Query: 574   gctgaacgtttcaccgactcatactcgtttctcagctgatcatacatctcatcaagcttc 633
             || ||||  |||||||||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 72445 gcagaacacttcaccgactcatattcattcctcagttggtcatacatctcatcaagcttc 72504

                        
Query: 634   ctcttttgcct 644
             ||||| |||||
Sbjct: 72505 ctcttctgcct 72515



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 642   cctggatttctctgcaaatttttcttgtaactcctgcttatcccttgtcaagttttcaat 701
             |||||||||||| |||||||||||||| | ||| |||||||| ||  ||||||||||| |
Sbjct: 72608 cctggatttctcagcaaatttttcttgcagctcgtgcttatctctgttcaagttttcatt 72667

                  
Query: 702   ctctt 706
             |||||
Sbjct: 72668 ctctt 72672



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 412   cgttgccttggttgtggagcccatccctcatctctgcgccctggggtttcaggaggatca 471
             |||||||||||  ||||| |||| |||||||||||  ||||||| |||| |||| |||||
Sbjct: 72070 cgttgccttggcggtggaccccagccctcatctctctgccctggagttttaggaagatca 72129

              
Query: 472   a 472
             |
Sbjct: 72130 a 72130



to top

>emb|BX814259.1|CNS0AC33 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB64ZG01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1338

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 118/141 (83%)
 Strand = Plus / Minus

                                                                       
Query: 554 agttgtttgcaggttgaatggctgaacgtttcaccgactcatactcgtttctcagctgat 613
           |||||||||| ||||  ||||||| |||||| || |||||||||||  |||| ||||| |
Sbjct: 846 agttgtttgctggttagatggctgtacgtttaactgactcatactcacttcttagctggt 787

                                                                       
Query: 614 catacatctcatcaagcttcctcttttgcctggatttctctgcaaatttttcttgtaact 673
           ||||||||||||||||||||||||| || || |||||||| |  || || ||||| | ||
Sbjct: 786 catacatctcatcaagcttcctcttctgtcttgatttctcagagaacttctcttggagct 727

                                
Query: 674 cctgcttatcccttgtcaagt 694
           | ||||||||| | |||||||
Sbjct: 726 cttgcttatccttggtcaagt 706



to top

>gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22G10 genomic sequence, complete
              sequence
          Length = 111936

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                          
Query: 554    agttgtttgcaggttgaatggctgaacgtttcaccgactcatactcgtttctcagctgat 613
              |||||||||| ||||| ||||||| |||||| || |||||||||||  |||| ||||| |
Sbjct: 105923 agttgtttgctggttggatggctgtacgtttaactgactcatactcacttcttagctggt 105982

                                       
Query: 614    catacatctcatcaagcttcctctt 638
              |||||||||||||||||||||||||
Sbjct: 105983 catacatctcatcaagcttcctctt 106007



to top

>gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 99960

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                         
Query: 554   agttgtttgcaggttgaatggctgaacgtttcaccgactcatactcgtttctcagctgat 613
             |||||||||| ||||| ||||||| |||||| || |||||||||||  |||| ||||| |
Sbjct: 64829 agttgtttgctggttggatggctgtacgtttaactgactcatactcacttcttagctggt 64888

                                      
Query: 614   catacatctcatcaagcttcctctt 638
             |||||||||||||||||||||||||
Sbjct: 64889 catacatctcatcaagcttcctctt 64913



to top

>dbj|AK108775.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H11, full
           insert sequence
          Length = 1325

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 93/109 (85%), Gaps = 3/109 (2%)
 Strand = Plus / Minus

                                                                       
Query: 195 gctcttcaaactctataacgtgaacatttgtggacggttacggg---gctgaggacgctt 251
           ||||||| || |||| ||||||||||| ||||||||||| ||||   |||||||||| ||
Sbjct: 188 gctcttccaattctacaacgtgaacatatgtggacggtttcgggaaagctgaggacgttt 129

                                                            
Query: 252 cactggtgagattatcatatttctcagagctgtcgaagaattgttcatg 300
           ||| || |||||||||||||||| ||||||||  |||| ||| ||||||
Sbjct: 128 cacaggcgagattatcatatttcgcagagctgcagaagtattattcatg 80



to top

>emb|AL080243.21|HSBA12M9 Human DNA sequence from clone RP11-12M9 on chromosome 22, complete
              sequence
          Length = 176287

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    ttttcgttacttccatgacaa 160
              |||||||||||||||||||||
Sbjct: 159050 ttttcgttacttccatgacaa 159070



to top

>gb|AE012032.1| Xanthomonas axonopodis pv. citri str. 306,  section 410 of 469 of the
            complete genome
          Length = 10295

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 354  tgcagcagtgtgaccaggcga 374
            |||||||||||||||||||||
Sbjct: 2693 tgcagcagtgtgaccaggcga 2713



to top

>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 625    tcaagcttcctcttttgcctg 645
              |||||||||||||||||||||
Sbjct: 124871 tcaagcttcctcttttgcctg 124891



to top

>emb|BX936436.13| Zebrafish DNA sequence from clone DKEY-16H19 in linkage group 6, complete
              sequence
          Length = 200434

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    agagctgtcgaagaattgtt 296
              ||||||||||||||||||||
Sbjct: 115361 agagctgtcgaagaattgtt 115380



to top

>ref|XM_381495.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01319.1)
           partial mRNA
          Length = 4242

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 84  ccacaagaataggaggaaga 103
           ||||||||||||||||||||
Sbjct: 808 ccacaagaataggaggaaga 789



to top

>ref|XM_949747.1| Theileria annulata strain Ankara protein kinase (TA05335) partial
            mRNA
          Length = 1947

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  ctggtgagattatcatatttctca 277
            |||||||| |||||||||||||||
Sbjct: 1139 ctggtgagtttatcatatttctca 1116



to top

>gb|AF099923.2| Caenorhabditis elegans fosmid H09G03, complete sequence
          Length = 36486

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tgatcttacaacaattgcac 132
             ||||||||||||||||||||
Sbjct: 26559 tgatcttacaacaattgcac 26578



to top

>gb|AC123976.23| Medicago truncatula clone mth2-30j23, complete sequence
          Length = 112917

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   ttggttgtggagcccatccc 438
             ||||||||||||||||||||
Sbjct: 71242 ttggttgtggagcccatccc 71261



to top

>gb|AC126780.18| Medicago truncatula clone mth2-10n4, complete sequence
          Length = 139213

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   attgttcatgttagctccaa 310
             ||||||||||||||||||||
Sbjct: 45262 attgttcatgttagctccaa 45243



to top

>emb|BX901979.16| Zebrafish DNA sequence from clone DKEY-74C10 in linkage group 13,
             complete sequence
          Length = 115885

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   agagctgtcgaagaattgtt 296
             ||||||||||||||||||||
Sbjct: 12795 agagctgtcgaagaattgtt 12814



to top

>gb|AC095055.3| Homo sapiens BAC clone RP11-372K14 from 4, complete sequence
          Length = 183478

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 647    atttctctgcaaatttttct 666
              ||||||||||||||||||||
Sbjct: 154911 atttctctgcaaatttttct 154892



to top

>dbj|AK032710.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
            region cDNA, RIKEN full-length enriched library,
            clone:6720407H06 product:unclassifiable, full insert
            sequence
          Length = 2770

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 510  gttaggcatgcctgagaaca 529
            ||||||||||||||||||||
Sbjct: 1709 gttaggcatgcctgagaaca 1728



to top

>gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197554

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 676    tgcttatcccttgtcaagttttca 699
              |||||||| |||||||||||||||
Sbjct: 111099 tgcttatcacttgtcaagttttca 111122



to top

>gb|AF210453.1|AF210453 Drosophila melanogaster dynein heavy chain mRNA, complete cds
          Length = 13803

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 658   aatttttcttgtaactcctg 677
             ||||||||||||||||||||
Sbjct: 10474 aatttttcttgtaactcctg 10455



to top

>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20,
              complete sequence
          Length = 217957

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    gaacatttgtggacggttac 235
              ||||||||||||||||||||
Sbjct: 211517 gaacatttgtggacggttac 211498



to top

>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence
          Length = 209784

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cactggtgagattatcatat 271
             ||||||||||||||||||||
Sbjct: 73960 cactggtgagattatcatat 73941



to top

>emb|CR407557.10| Zebrafish DNA sequence from clone DKEYP-66B8 in linkage group 6,
             complete sequence
          Length = 119597

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   agagctgtcgaagaattgtt 296
             ||||||||||||||||||||
Sbjct: 96722 agagctgtcgaagaattgtt 96703



to top

>gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome 8, complete sequence
          Length = 228830

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    cactggtgagattatcatat 271
              ||||||||||||||||||||
Sbjct: 146237 cactggtgagattatcatat 146218



to top

>emb|AL845471.7| Mouse DNA sequence from clone RP23-320N1 on chromosome 2, complete
             sequence
          Length = 127825

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   gttaggcatgcctgagaaca 529
             ||||||||||||||||||||
Sbjct: 42113 gttaggcatgcctgagaaca 42094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,928,326
Number of Sequences: 3902068
Number of extensions: 5928326
Number of successful extensions: 107673
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107579
Number of HSP's gapped (non-prelim): 83
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top