ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34h17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BXD_CLOBO (P19321) Botulinum neurotoxin type D precursor (EC 3.4... 28 5.2
2YDBJ_SCHPO (Q10369) Hypothetical protein C22E12.19 in chromosome I 28 6.8
3GBRP_MOUSE (Q8QZW7) Gamma-aminobutyric-acid receptor pi subunit ... 28 6.8
4OR65A_DROME (P82982) Putative odorant receptor 65a 27 8.9

>BXD_CLOBO (P19321) Botulinum neurotoxin type D precursor (EC 3.4.24.69)|
           (BoNT/D) (Bontoxilysin D) [Contains: Botulinum
           neurotoxin D light chain; Botulinum neurotoxin D heavy
           chain]
          Length = 1276

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 117 ISEQGQNSECMSSLLTLSCNSFLNRY*KTLLAATPNRKEHETC 245
           I   GQN E   +L  LS  S ++ + K  L  T N ++  TC
Sbjct: 408 IENSGQNIERNPALQKLSSESVVDLFTKVCLRLTKNSRDDSTC 450



to top

>YDBJ_SCHPO (Q10369) Hypothetical protein C22E12.19 in chromosome I|
          Length = 661

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 273 SVGSRRKKLHMSHVPSDSESQRAMSFSIYSGMSCMIM 163
           S+ +  +  H  H+P   E + A+ FS+  GM+ M M
Sbjct: 515 SISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMKM 551



to top

>GBRP_MOUSE (Q8QZW7) Gamma-aminobutyric-acid receptor pi subunit precursor|
           (GABA(A) receptor)
          Length = 440

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 204 MSFSIYSGMSCMIMLTRSSCIQ 139
           MS+S+Y    C+ +LT+ +CIQ
Sbjct: 1   MSYSLYLAFLCLSLLTQRTCIQ 22



to top

>OR65A_DROME (P82982) Putative odorant receptor 65a|
          Length = 417

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 166 NVNKELMHSEFCPCSEMRQCPLV*LVNPTDTV-MNRSIFVIFRCHSLFLYVCN 11
           NV  + +H +FC   +  Q PL+   +P     +   +F++ +C+S+   + N
Sbjct: 362 NVGSKSIHRQFCFFIQRAQKPLIMKASPFPPFNLENYMFILKQCYSILTILAN 414


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,732,245
Number of Sequences: 219361
Number of extensions: 814997
Number of successful extensions: 1478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top