ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34h17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC020631.20| Homo sapiens 3 BAC RP11-308C15 (Roswell Park Can... 44 0.35
2gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete... 42 1.4
3gb|AC010922.10| Drosophila melanogaster clone BACR09H01, complet... 42 1.4
4gb|AY094969.1| Drosophila melanogaster SD08167 full insert cDNA 42 1.4
5ref|NM_132955.1| Drosophila melanogaster RhoGAP15B CG4937-RA (Rh... 42 1.4
6gb|AE003504.4| Drosophila melanogaster chromosome X, section 56 ... 42 1.4
7ref|XM_415685.1| PREDICTED: Gallus gallus similar to regulator o... 40 5.5
8gb|AC110496.12| Mus musculus chromosome 7, clone RP23-56P3, comp... 40 5.5
9ref|XM_734201.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.5
10emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in... 40 5.5
11gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.5
12emb|BX005065.10| Zebrafish DNA sequence from clone CH211-163B2 i... 40 5.5
13emb|AL935306.6| Zebrafish DNA sequence from clone DKEY-65O9, com... 40 5.5
14gb|AC101855.14| Mus musculus chromosome 1, clone RP23-301D16, co... 40 5.5
15emb|CT010492.15| Mouse DNA sequence from clone RP23-337A21 on ch... 40 5.5
16emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 5.5
17gb|M65866.1|DHVPB1 Tick-borne Dhori virus segment 2-encoded PB1 ... 40 5.5
18dbj|AB028020.1| Fusarium oxysporum SAP1 gene for aspartic protei... 40 5.5

>gb|AC020631.20| Homo sapiens 3 BAC RP11-308C15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 32634

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 156  ttgttaacattatcatgcaactcatt 181
            ||||||||||||| ||||||||||||
Sbjct: 9457 ttgttaacattataatgcaactcatt 9432



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>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence
          Length = 179077

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 356   gtcattcttgtccttcttgga 376
             |||||||||||||||||||||
Sbjct: 14342 gtcattcttgtccttcttgga 14362



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>gb|AC010922.10| Drosophila melanogaster clone BACR09H01, complete sequence
          Length = 152607

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 356    gtcattcttgtccttcttgga 376
              |||||||||||||||||||||
Sbjct: 111883 gtcattcttgtccttcttgga 111903



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>gb|AY094969.1| Drosophila melanogaster SD08167 full insert cDNA
          Length = 4692

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  gtcattcttgtccttcttgga 376
            |||||||||||||||||||||
Sbjct: 3875 gtcattcttgtccttcttgga 3855



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>ref|NM_132955.1| Drosophila melanogaster RhoGAP15B CG4937-RA (RhoGAP15B), mRNA
          Length = 4673

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  gtcattcttgtccttcttgga 376
            |||||||||||||||||||||
Sbjct: 3875 gtcattcttgtccttcttgga 3855



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>gb|AE003504.4| Drosophila melanogaster chromosome X, section 56 of 74 of the complete
             sequence
          Length = 298703

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 356   gtcattcttgtccttcttgga 376
             |||||||||||||||||||||
Sbjct: 17296 gtcattcttgtccttcttgga 17276



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>ref|XM_415685.1| PREDICTED: Gallus gallus similar to regulator of G protein signaling
            RGS9-1 (LOC417433), mRNA
          Length = 5166

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  gcttcttcctcctgctgcct 268
            ||||||||||||||||||||
Sbjct: 2195 gcttcttcctcctgctgcct 2176



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>gb|AC110496.12| Mus musculus chromosome 7, clone RP23-56P3, complete sequence
          Length = 170784

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 255    tcctcctgctgcctacagagcaaa 278
              |||||||||||||| |||||||||
Sbjct: 130655 tcctcctgctgccttcagagcaaa 130678



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>ref|XM_734201.1| Plasmodium chabaudi chabaudi hypothetical protein (PC106530.00.0)
           partial mRNA
          Length = 1323

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  gcaacggaatattacaaaaa 57
           ||||||||||||||||||||
Sbjct: 726 gcaacggaatattacaaaaa 745



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>emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in linkage group 2,
              complete sequence
          Length = 206746

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 107    acattgcctcatttctgaacaaggacaa 134
              |||||||||||||| ||||||| |||||
Sbjct: 118420 acattgcctcatttttgaacaatgacaa 118393



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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     gcccggcgtcattcttgtcc 368
               ||||||||||||||||||||
Sbjct: 4265578 gcccggcgtcattcttgtcc 4265559



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>emb|BX005065.10| Zebrafish DNA sequence from clone CH211-163B2 in linkage group 8,
            complete sequence
          Length = 175016

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   taggattaactagttaaact 101
            ||||||||||||||||||||
Sbjct: 6968 taggattaactagttaaact 6987



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>emb|AL935306.6| Zebrafish DNA sequence from clone DKEY-65O9, complete sequence
          Length = 207183

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    acaaaactctgaatgcatga 150
              ||||||||||||||||||||
Sbjct: 111578 acaaaactctgaatgcatga 111559



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>gb|AC101855.14| Mus musculus chromosome 1, clone RP23-301D16, complete sequence
          Length = 170913

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    tgtggagcttcttcctcctg 262
              ||||||||||||||||||||
Sbjct: 141413 tgtggagcttcttcctcctg 141394



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>emb|CT010492.15| Mouse DNA sequence from clone RP23-337A21 on chromosome 13, complete
            sequence
          Length = 11816

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  tggagcttcttcctcctgct 264
            ||||||||||||||||||||
Sbjct: 5545 tggagcttcttcctcctgct 5526



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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   acaaaactctgaatgcatga 150
             ||||||||||||||||||||
Sbjct: 42143 acaaaactctgaatgcatga 42162



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>gb|M65866.1|DHVPB1 Tick-borne Dhori virus segment 2-encoded PB1 polymerase gene,
            complete cds
          Length = 2224

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  tgcctacagagcaaaaacgg 283
            ||||||||||||||||||||
Sbjct: 2129 tgcctacagagcaaaaacgg 2148



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>dbj|AB028020.1| Fusarium oxysporum SAP1 gene for aspartic proteinase, complete cds
          Length = 1714

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 338  cttcttcttctgcccggcgt 357
            ||||||||||||||||||||
Sbjct: 1176 cttcttcttctgcccggcgt 1195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,433,517
Number of Sequences: 3902068
Number of extensions: 4433517
Number of successful extensions: 80227
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80194
Number of HSP's gapped (non-prelim): 33
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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