ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress re... 1302 0.0
2emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein 1302 0.0
3ref|XM_517590.1| PREDICTED: Pan troglodytes similar to FAT gene ... 42 2.5
4gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 42 2.5
5gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 42 2.5
6ref|NM_005245.3| Homo sapiens FAT tumor suppressor homolog 1 (Dr... 42 2.5
7gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosom... 42 2.5
8gb|AC116489.6| Mus musculus chromosome 18, clone RP24-137L16, co... 42 2.5
9emb|AL049545.6|HSDJ263J7 Human DNA sequence from clone RP1-263J7... 42 2.5
10ref|XM_961496.1| PREDICTED: Tribolium castaneum similar to CG406... 42 2.5
11ref|XM_970737.1| PREDICTED: Tribolium castaneum similar to CG406... 42 2.5
12emb|X87241.1|HSHFATPRO H.sapiens mRNA for hFat protein 42 2.5
13emb|BX251411.1| Tropheryma whipplei TW08/27, complete genome; se... 42 2.5
14gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, co... 42 2.5
15gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complet... 42 2.5
16gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Ca... 42 2.5
17dbj|D00184.1|STASCAG Staphylococcus aureus gene for staphylocoag... 42 2.5
18emb|AJ311974.1|SAU311974 Staphylococcus aureus partial coa gene ... 42 2.5
19gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome 42 2.5
20emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 i... 42 2.5
21emb|BX469885.9| Zebrafish DNA sequence from clone DKEY-164N2 in ... 42 2.5 
>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein
          Length = 1841

 Score = 1302 bits (657), Expect = 0.0
 Identities = 703/715 (98%), Gaps = 5/715 (0%)
 Strand = Plus / Minus

                                                                        
Query: 23   ttacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgttgctaa 82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 ttacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgttgctaa 1777

                                                                        
Query: 83   caaaaactcaaccgactatgactcgtacaacgata--tacgctgcaaggagcgcataatt 140
            ||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||
Sbjct: 1776 caaaaactcaaccgactataactcgtacaacgatcagtacgctgcaaggagcgcataatt 1717

                                                                        
Query: 141  ttattcattacaatacaatacacacaagtacgaaatgcaaatacgtagctgccagcagca 200
            ||||||||||||||||||||||||  ||  ||||||||||||||| ||||||||||||||
Sbjct: 1716 ttattcattacaatacaatacaca--agatcgaaatgcaaatacg-agctgccagcagca 1660

                                                                        
Query: 201  ctaactccagggcttgttgcatttcttcatgaacggaagcaaggattttggcgctccatc 260
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1659 ctaactccagggcttgttgcatttgttcatgaacggaagcaaggattttggcgctccatc 1600

                                                                        
Query: 261  ctagccaatgcttcgcgtatctctctgataccttgcatcgcctctcccaggtcgctcctt 320
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 ctagccaatgcttcacgtatctctctgataccttgcatcgcctctcccaggtcgctcctt 1540

                                                                        
Query: 321  agacgccggatctctgtgctgagataggacatcctctgatccatgttcctactcaaatct 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1539 agacgccggatctctgtgctgagataggacatcctctgatccatgttcctactcagatct 1480

                                                                        
Query: 381  gccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaatttcacga 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 gccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaatttcacga 1420

                                                                        
Query: 441  ggcagtcgctttatcagctcttttattttttcaacatctttctctactttgatttgattg 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ggcagtcgctttatcagctcttttattttttcaacatctttctctactttgatttgattg 1360

                                                                        
Query: 501  atcacctcatcatgatcgctgcctatgtcactgccaagcttgttcagtaaaaacaagttt 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 atcacctcatcatgatcgctgcctatgtcactgccaagcttgttcagtaaaaacaagttt 1300

                                                                        
Query: 561  gtccagttgagctgcttatgctccccaaagcccccttcaccagcgattatgaaaggcaca 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 gtccagttgagctgcttatgctccccaaagcccccttcaccagcgattatgaaaggcaca 1240

                                                                        
Query: 621  aattttccataaggcccacccagatcaaggtagctgtttgatggaagctccctacgctcg 680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 aattttccataaggcccacccagatcaaggtagctgtttgatggaagctccctacgctcg 1180

                                                                   
Query: 681  aaattggaagtcctaactcctgcctgtggaagcctataagccattgattatcact 735
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 aaattggaagtcctaactcctgcctgtggaagcctataagccattgattatcact 1125
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>emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein
          Length = 841

 Score = 1302 bits (657), Expect = 0.0
 Identities = 703/715 (98%), Gaps = 5/715 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  ttacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgttgctaa 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ttacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgttgctaa 777

                                                                       
Query: 83  caaaaactcaaccgactatgactcgtacaacgata--tacgctgcaaggagcgcataatt 140
           ||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||
Sbjct: 776 caaaaactcaaccgactataactcgtacaacgatcagtacgctgcaaggagcgcataatt 717

                                                                       
Query: 141 ttattcattacaatacaatacacacaagtacgaaatgcaaatacgtagctgccagcagca 200
           ||||||||||||||||||||||||  ||  ||||||||||||||| ||||||||||||||
Sbjct: 716 ttattcattacaatacaatacaca--agatcgaaatgcaaatacg-agctgccagcagca 660

                                                                       
Query: 201 ctaactccagggcttgttgcatttcttcatgaacggaagcaaggattttggcgctccatc 260
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 659 ctaactccagggcttgttgcatttgttcatgaacggaagcaaggattttggcgctccatc 600

                                                                       
Query: 261 ctagccaatgcttcgcgtatctctctgataccttgcatcgcctctcccaggtcgctcctt 320
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctagccaatgcttcacgtatctctctgataccttgcatcgcctctcccaggtcgctcctt 540

                                                                       
Query: 321 agacgccggatctctgtgctgagataggacatcctctgatccatgttcctactcaaatct 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 539 agacgccggatctctgtgctgagataggacatcctctgatccatgttcctactcagatct 480

                                                                       
Query: 381 gccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaatttcacga 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaatttcacga 420

                                                                       
Query: 441 ggcagtcgctttatcagctcttttattttttcaacatctttctctactttgatttgattg 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggcagtcgctttatcagctcttttattttttcaacatctttctctactttgatttgattg 360

                                                                       
Query: 501 atcacctcatcatgatcgctgcctatgtcactgccaagcttgttcagtaaaaacaagttt 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atcacctcatcatgatcgctgcctatgtcactgccaagcttgttcagtaaaaacaagttt 300

                                                                       
Query: 561 gtccagttgagctgcttatgctccccaaagcccccttcaccagcgattatgaaaggcaca 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtccagttgagctgcttatgctccccaaagcccccttcaccagcgattatgaaaggcaca 240

                                                                       
Query: 621 aattttccataaggcccacccagatcaaggtagctgtttgatggaagctccctacgctcg 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aattttccataaggcccacccagatcaaggtagctgtttgatggaagctccctacgctcg 180

                                                                  
Query: 681 aaattggaagtcctaactcctgcctgtggaagcctataagccattgattatcact 735
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aaattggaagtcctaactcctgcctgtggaagcctataagccattgattatcact 125
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>ref|XM_517590.1| PREDICTED: Pan troglodytes similar to FAT gene product (LOC461671),
            mRNA
          Length = 8879

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 51   tgcagacagttcagacatacacatgttgc 79
            ||||||||||||||||||| ||| |||||
Sbjct: 3705 tgcagacagttcagacatagacaagttgc 3733
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 475     catctttctctactttgatttgattgatc 503
               |||||| || |||||||||||||||||||
Sbjct: 1582675 catcttactttactttgatttgattgatc 1582647
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>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 475    catctttctctactttgatttgattgatc 503
              |||||| || |||||||||||||||||||
Sbjct: 133303 catcttactttactttgatttgattgatc 133275
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>ref|NM_005245.3| Homo sapiens FAT tumor suppressor homolog 1 (Drosophila) (FAT), mRNA
          Length = 14773

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 51   tgcagacagttcagacatacacatgttgc 79
            ||||||||||||||||||| ||| |||||
Sbjct: 7436 tgcagacagttcagacatagacaagttgc 7464
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>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence
          Length = 161757

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 459   tcttttattttttcaacatctttct 483
             |||||||||||||||| ||||||||
Sbjct: 89421 tcttttattttttcaaaatctttct 89397
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>gb|AC116489.6| Mus musculus chromosome 18, clone RP24-137L16, complete sequence
          Length = 198242

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 542   gttcagtaaaaacaagtttgtccag 566
             ||||||||||||||||| |||||||
Sbjct: 34562 gttcagtaaaaacaagtgtgtccag 34586
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>emb|AL049545.6|HSDJ263J7 Human DNA sequence from clone RP1-263J7 on chromosome 6q14.3-15
             Contains an 60S Ribosomal Protein L7 (RPL7) pseudogene and
             a RAB1, member RAS oncogene family (RAB1) pseudogene,
             complete sequence
          Length = 104081

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 479   tttctctactttgatttgattgatc 503
             ||||||||||||||| |||||||||
Sbjct: 70787 tttctctactttgatctgattgatc 70811
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>ref|XM_961496.1| PREDICTED: Tribolium castaneum similar to CG4069-PA, transcript
            variant 1 (LOC659553), mRNA
          Length = 1591

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 11   ataattttattnttacaaacactt 34
            ||||||||||| ||||||||||||
Sbjct: 1581 ataattttattgttacaaacactt 1558
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>ref|XM_970737.1| PREDICTED: Tribolium castaneum similar to CG4069-PA, transcript
            variant 2 (LOC659553), mRNA
          Length = 1403

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 11   ataattttattnttacaaacactt 34
            ||||||||||| ||||||||||||
Sbjct: 1393 ataattttattgttacaaacactt 1370
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>emb|X87241.1|HSHFATPRO H.sapiens mRNA for hFat protein
          Length = 14756

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 51   tgcagacagttcagacatacacatgttgc 79
            ||||||||||||||||||| ||| |||||
Sbjct: 7443 tgcagacagttcagacatagacaagttgc 7471
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>emb|BX251411.1| Tropheryma whipplei TW08/27, complete genome; segment 2/3
          Length = 299050

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 448    gctttatcagctcttttattttttc 472
              |||| ||||||||||||||||||||
Sbjct: 165908 gcttcatcagctcttttattttttc 165884
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>gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, complete sequence
          Length = 192400

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    attacaatacaatacacacaa 167
              |||||||||||||||||||||
Sbjct: 147074 attacaatacaatacacacaa 147094
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>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence
          Length = 153458

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 51     tgcagacagttcagacatacacatgttgc 79
              ||||||||||||||||||| ||| |||||
Sbjct: 120143 tgcagacagttcagacatagacaagttgc 120115
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>gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165085

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 475   catctttctctactttgattt 495
             |||||||||||||||||||||
Sbjct: 16776 catctttctctactttgattt 16796
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>dbj|D00184.1|STASCAG Staphylococcus aureus gene for staphylocoagulase, complete cds
          Length = 3042

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 464 tattttttcaacatctttctc 484
           |||||||||||||||||||||
Sbjct: 646 tattttttcaacatctttctc 626
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>emb|AJ311974.1|SAU311974 Staphylococcus aureus partial coa gene for coagulase, strain
           NTCT1803
          Length = 1377

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 464 tattttttcaacatctttctc 484
           |||||||||||||||||||||
Sbjct: 411 tattttttcaacatctttctc 391
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>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome
          Length = 927303

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 448    gctttatcagctcttttattttttc 472
              |||| ||||||||||||||||||||
Sbjct: 403455 gcttcatcagctcttttattttttc 403479
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>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20,
              complete sequence
          Length = 158302

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    tacaatacaatacacacaagt 169
              |||||||||||||||||||||
Sbjct: 154150 tacaatacaatacacacaagt 154170
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>emb|BX469885.9| Zebrafish DNA sequence from clone DKEY-164N2 in linkage group 19,
            complete sequence
          Length = 87215

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 479  tttctctactttgatttgatt 499
            |||||||||||||||||||||
Sbjct: 2385 tttctctactttgatttgatt 2365


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,921,950
Number of Sequences: 3902068
Number of extensions: 7921950
Number of successful extensions: 152865
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152798
Number of HSP's gapped (non-prelim): 61
length of query: 735
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 712
effective length of database: 17,143,297,704
effective search space: 12206027965248
effective search space used: 12206027965248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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