| Clone Name | rbags34f15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076F23, full insert sequence Length = 4575 Score = 460 bits (232), Expect = e-126 Identities = 424/488 (86%) Strand = Plus / Minus Query: 152 ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 4268 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 4209 Query: 212 acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271 || |||| |||||| || |||||| | || || || | ||||||||||| ||||||||| Sbjct: 4208 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 4149 Query: 272 gtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatgaggg 331 ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| Sbjct: 4148 gtgttcacgttgaatttcctcacccccaaagctatgcattcctttacaagttcatgaggc 4089 Query: 332 aggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacgaagt 391 || || ||||||||||| || ||||||||||| |||||||||| || ||||||||||| Sbjct: 4088 agtccggatgctccatggagaaccaagctaacacctttcttcattgtcaatgcacgaagg 4029 Query: 392 tcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattc 451 |||| ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| Sbjct: 4028 tcctctagcaagtcaaatctgagatttggtccactggggggatattttccatgaacattt 3969 Query: 452 ccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctgagca 511 ||||| |||||||||| | ||| ||||||||||||||||| || | ||||||||| Sbjct: 3968 ccaatacatactgctagagaatcgataccagtttcatcaatgaattccaaggcctgagca 3909 Query: 512 atatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgataat 571 | |||||||||||||||||| |||||||| | ||||| ||||||||| |||||||| | | Sbjct: 3908 acatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgcctgagagt 3849 Query: 572 ctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttcttt 631 ||||| ||||||||||| |||||||||||||| | |||||||| |||||||||| || || Sbjct: 3848 ctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagatatgctcctt 3789 Query: 632 gtgtataa 639 |||||||| Sbjct: 3788 gtgtataa 3781
>dbj|AK067794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116E07, full insert sequence Length = 4614 Score = 460 bits (232), Expect = e-126 Identities = 424/488 (86%) Strand = Plus / Minus Query: 152 ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 4268 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 4209 Query: 212 acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271 || |||| |||||| || |||||| | || || || | ||||||||||| ||||||||| Sbjct: 4208 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 4149 Query: 272 gtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatgaggg 331 ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| Sbjct: 4148 gtgttcacgttgaatttcctcacccccaaagctatgcattcctttacaagttcatgaggc 4089 Query: 332 aggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacgaagt 391 || || ||||||||||| || ||||||||||| |||||||||| || ||||||||||| Sbjct: 4088 agtccggatgctccatggagaaccaagctaacacctttcttcattgtcaatgcacgaagg 4029 Query: 392 tcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattc 451 |||| ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| Sbjct: 4028 tcctctagcaagtcaaatctgagatttggtccactggggggatattttccatgaacattt 3969 Query: 452 ccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctgagca 511 ||||| |||||||||| | ||| ||||||||||||||||| || | ||||||||| Sbjct: 3968 ccaatacatactgctagagaatcgataccagtttcatcaatgaattccaaggcctgagca 3909 Query: 512 atatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgataat 571 | |||||||||||||||||| |||||||| | ||||| ||||||||| |||||||| | | Sbjct: 3908 acatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgcctgagagt 3849 Query: 572 ctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttcttt 631 ||||| ||||||||||| |||||||||||||| | |||||||| |||||||||| || || Sbjct: 3848 ctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagatatgctcctt 3789 Query: 632 gtgtataa 639 |||||||| Sbjct: 3788 gtgtataa 3781
>dbj|AK060181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B12, full insert sequence Length = 2085 Score = 460 bits (232), Expect = e-126 Identities = 424/488 (86%) Strand = Plus / Minus Query: 152 ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 1724 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 1665 Query: 212 acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271 || |||| |||||| || |||||| | || || || | ||||||||||| ||||||||| Sbjct: 1664 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 1605 Query: 272 gtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatgaggg 331 ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| Sbjct: 1604 gtgttcacgttgaatttcctcacccccaaagctatgcattcctttacaagttcatgaggc 1545 Query: 332 aggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacgaagt 391 || || ||||||||||| || ||||||||||| |||||||||| || ||||||||||| Sbjct: 1544 agtccggatgctccatggagaaccaagctaacacctttcttcattgtcaatgcacgaagg 1485 Query: 392 tcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattc 451 |||| ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| Sbjct: 1484 tcctctagcaagtcaaatctgagatttggtccactggggggatattttccatgaacattt 1425 Query: 452 ccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctgagca 511 ||||| |||||||||| | ||| ||||||||||||||||| || | ||||||||| Sbjct: 1424 ccaatacatactgctagagaatcgataccagtttcatcaatgaattccaaggcctgagca 1365 Query: 512 atatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgataat 571 | |||||||||||||||||| |||||||| | ||||| ||||||||| |||||||| | | Sbjct: 1364 acatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgcctgagagt 1305 Query: 572 ctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttcttt 631 ||||| ||||||||||| |||||||||||||| | |||||||| |||||||||| || || Sbjct: 1304 ctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagatatgctcctt 1245 Query: 632 gtgtataa 639 |||||||| Sbjct: 1244 gtgtataa 1237
>gb|AY106092.1| Zea mays PCO125244 mRNA sequence Length = 931 Score = 387 bits (195), Expect = e-104 Identities = 417/491 (84%) Strand = Plus / Minus Query: 149 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 208 ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || ||| Sbjct: 616 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 557 Query: 209 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 268 || ||||||| || ||| || |||||||| |||| ||| |||||||||||| || ||| Sbjct: 556 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 497 Query: 269 tccgtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatga 328 || |||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| Sbjct: 496 tcggtgttcacattgaattttctcacgcccaagtctatgcactcctttacgagctcatga 437 Query: 329 gggaggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacga 388 | || |||||||||||||| || |||||||||||||||||||| | |||||||||||| Sbjct: 436 gatagaccagatgctccatggaggaccaagctaactcctttctttaatgttaatgcacga 377 Query: 389 agttcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaaca 448 || |||||||||||||| | | | ||||| |||||||| || ||||||||||| |||||| Sbjct: 376 aggtcctttagcaagtcgaatttaaggtttggtccactaggtggatattttccatgaaca 317 Query: 449 ttcccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctga 508 || |||||||| ||||||| |||||||| | || ||||||||||| | |||||||| Sbjct: 316 tttccaatgcaaactgctagagcatcaatgcttgtctcatcaataaattcctcagcctgg 257 Query: 509 gcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgat 568 |||| ||||||||||||||||||||||||||||| |||| ||||||||| | |||||| Sbjct: 256 gcaacatcagtaaatcttgcttcatattcttcaacggtcatgccatcttcagagcctgag 197 Query: 569 aatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttc 628 | || || | |||||||||||||| | ||||| |||||||||| |||||||||| || Sbjct: 196 agcctacccaactcagcttccacaagtaaaccttttgcatgagccaaggaagatatgctc 137 Query: 629 tttgtgtataa 639 ||||||||||| Sbjct: 136 tttgtgtataa 126
>gb|BT024068.1| Zea mays clone EL01N0450B05 mRNA sequence Length = 2636 Score = 379 bits (191), Expect = e-102 Identities = 416/491 (84%) Strand = Plus / Minus Query: 149 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 208 ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || ||| Sbjct: 2349 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 2290 Query: 209 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 268 || ||||||| || ||| || |||||||| |||| ||| |||||||||||| || ||| Sbjct: 2289 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 2230 Query: 269 tccgtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatga 328 || |||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| Sbjct: 2229 tcggtgttcacattgaattttctcacgcccaagtctatgcactcctttacgagctcatga 2170 Query: 329 gggaggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacga 388 | || |||||||||||||| || |||||||||||||||||||| | |||||||||||| Sbjct: 2169 gatagaccagatgctccatggagaaccaagctaactcctttctttaatgttaatgcacga 2110 Query: 389 agttcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaaca 448 || |||||||||||||| | | | ||||| |||||||| || ||||||||||| |||||| Sbjct: 2109 aggtcctttagcaagtcgaatttaaggtttggtccactaggtggatattttccatgaaca 2050 Query: 449 ttcccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctga 508 || |||||||| ||||||| |||||||| | || ||||||||||| | |||||||| Sbjct: 2049 tttccaatgcaaactgctagagcatcaatgcttgtctcatcaataaattcctcagcctgg 1990 Query: 509 gcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgat 568 |||| ||||||||||||||||||||||||||||| |||| ||||||||| | ||||| Sbjct: 1989 gcaacatcagtaaatcttgcttcatattcttcaacggtcatgccatcttcagaacctgag 1930 Query: 569 aatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttc 628 | || || | |||||||||||||| | ||||| |||||||||| |||||||||| || Sbjct: 1929 agcctacccaactcagcttccacaagtaaaccttttgcatgagccaaggaagatatgctc 1870 Query: 629 tttgtgtataa 639 ||||||||||| Sbjct: 1869 tttgtgtataa 1859
>gb|BT017259.1| Zea mays clone EL01N0308F02.c mRNA sequence Length = 638 Score = 283 bits (143), Expect = 3e-73 Identities = 296/347 (85%) Strand = Plus / Minus Query: 149 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 208 ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || ||| Sbjct: 352 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 293 Query: 209 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 268 || ||||||| || ||| || |||||||| |||| ||| |||||||||||| || ||| Sbjct: 292 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 233 Query: 269 tccgtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatga 328 || |||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| Sbjct: 232 tcggtgttcacattgaattttctcacgcccaagtctatgcactcctttacgagctcatga 173 Query: 329 gggaggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacga 388 | || |||||||||||||| || |||||||||||||||||||| | |||||||||||| Sbjct: 172 gatagaccagatgctccatggagaaccaagctaactcctttctttaatgttaatgcacga 113 Query: 389 agttcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaaca 448 || |||||||||||||| | | | ||||| |||||||| || ||||||||||| |||||| Sbjct: 112 aggtcctttagcaagtcgaatttaaggtttggtccactaggtggatattttccatgaaca 53 Query: 449 ttcccaatgcatactgctaacgcatcaataccagtttcatcaataaa 495 || |||||||| ||||||| |||||||| | || ||||||||||| Sbjct: 52 tttccaatgcaaactgctagagcatcaatgcttgtctcatcaataaa 6
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 172 bits (87), Expect = 9e-40 Identities = 144/163 (88%) Strand = Plus / Minus Query: 152 ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 8327352 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 8327293 Query: 212 acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271 || |||| |||||| || |||||| | || || || | ||||||||||| ||||||||| Sbjct: 8327292 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 8327233 Query: 272 gtgttcacgttgaattttctcacccccaaatctatgcactcct 314 ||||||||||||||||| |||||||||||| ||||||| |||| Sbjct: 8327232 gtgttcacgttgaatttcctcacccccaaagctatgcattcct 8327190 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Minus Query: 504 cctgagcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgc 563 ||||||||| |||||||||||||||||| |||||||| | ||||| ||||||||| |||| Sbjct: 8325225 cctgagcaacatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgc 8325166 Query: 564 ctgataatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagata 623 |||| | |||||| ||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct: 8325165 ctgagagtctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagata 8325106 Query: 624 tgttctttgtgtataa 639 || || |||||||||| Sbjct: 8325105 tgctccttgtgtataa 8325090 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 397 tagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattcccaat 456 ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 8325422 tagcaagtcaaatctgagatttggtccactggggggatattttccatgaacatttccaat 8325363 Query: 457 gcatactgctaacgcatcaataccagtttcatcaat 492 |||||||||| | ||| ||||||||||||||||| Sbjct: 8325362 acatactgctagagaatcgataccagtttcatcaat 8325327 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 312 cctttacaagttcatgagggaggccagatgctccatgaagtaccaagctaactcctttct 371 ||||||||||||||||||| || || ||||||||||| || ||||||||||| ||||||| Sbjct: 8326697 cctttacaagttcatgaggcagtccggatgctccatggagaaccaagctaacacctttct 8326638 Query: 372 tcagagttaatgcacgaagttcct 395 ||| || ||||||||||| |||| Sbjct: 8326637 tcattgtcaatgcacgaaggtcct 8326614
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 172 bits (87), Expect = 9e-40 Identities = 144/163 (88%) Strand = Plus / Minus Query: 152 ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 120857 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 120798 Query: 212 acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271 || |||| |||||| || |||||| | || || || | ||||||||||| ||||||||| Sbjct: 120797 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 120738 Query: 272 gtgttcacgttgaattttctcacccccaaatctatgcactcct 314 ||||||||||||||||| |||||||||||| ||||||| |||| Sbjct: 120737 gtgttcacgttgaatttcctcacccccaaagctatgcattcct 120695 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Minus Query: 504 cctgagcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgc 563 ||||||||| |||||||||||||||||| |||||||| | ||||| ||||||||| |||| Sbjct: 118730 cctgagcaacatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgc 118671 Query: 564 ctgataatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagata 623 |||| | |||||| ||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct: 118670 ctgagagtctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagata 118611 Query: 624 tgttctttgtgtataa 639 || || |||||||||| Sbjct: 118610 tgctccttgtgtataa 118595 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 397 tagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattcccaat 456 ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 118927 tagcaagtcaaatctgagatttggtccactggggggatattttccatgaacatttccaat 118868 Query: 457 gcatactgctaacgcatcaataccagtttcatcaat 492 |||||||||| | ||| ||||||||||||||||| Sbjct: 118867 acatactgctagagaatcgataccagtttcatcaat 118832 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 312 cctttacaagttcatgagggaggccagatgctccatgaagtaccaagctaactcctttct 371 ||||||||||||||||||| || || ||||||||||| || ||||||||||| ||||||| Sbjct: 120202 cctttacaagttcatgaggcagtccggatgctccatggagaaccaagctaacacctttct 120143 Query: 372 tcagagttaatgcacgaagttcct 395 ||| || ||||||||||| |||| Sbjct: 120142 tcattgtcaatgcacgaaggtcct 120119
>dbj|AP007163.1| Aspergillus oryzae RIB40 genomic DNA, SC166 Length = 338231 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 496 ctgatcagcctgagcaatatcag 518 ||||||||||||||||||||||| Sbjct: 277148 ctgatcagcctgagcaatatcag 277126
>ref|XM_516859.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ33620 (LOC460832), mRNA Length = 2856 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 ttgctggcttcacttttcattg 121 |||||||||||||||||||||| Sbjct: 1187 ttgctggcttcacttttcattg 1166
>ref|NM_178824.3| Homo sapiens WD repeat domain 49 (WDR49), mRNA Length = 2672 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 ttgctggcttcacttttcattg 121 |||||||||||||||||||||| Sbjct: 731 ttgctggcttcacttttcattg 710
>ref|NM_001006862.1| Xenopus tropicalis cellular retinoic acid binding protein 2 (crabp2), mRNA Length = 2584 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 tggtggagtgttgctggcttca 111 |||||||||||||||||||||| Sbjct: 704 tggtggagtgttgctggcttca 683
>gb|BC076971.1| Xenopus tropicalis cellular retinoic acid binding protein 2, mRNA (cDNA clone MGC:89469 IMAGE:6991700), complete cds Length = 2584 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 tggtggagtgttgctggcttca 111 |||||||||||||||||||||| Sbjct: 704 tggtggagtgttgctggcttca 683
>gb|BC035512.2| Homo sapiens WD repeat domain 49, mRNA (cDNA clone MGC:34766 IMAGE:5199615), complete cds Length = 2672 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 ttgctggcttcacttttcattg 121 |||||||||||||||||||||| Sbjct: 731 ttgctggcttcacttttcattg 710
>dbj|AK097556.1| Homo sapiens cDNA FLJ40237 fis, clone TESTI2023414 Length = 2065 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 ttgctggcttcacttttcattg 121 |||||||||||||||||||||| Sbjct: 1629 ttgctggcttcacttttcattg 1608
>gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143620 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 100 ttgctggcttcacttttcattg 121 |||||||||||||||||||||| Sbjct: 90539 ttgctggcttcacttttcattg 90560
>emb|CR855423.2| Xenopus tropicalis finished cDNA, clone TNeu059b11 Length = 2482 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 tggtggagtgttgctggcttca 111 |||||||||||||||||||||| Sbjct: 613 tggtggagtgttgctggcttca 592
>gb|AC166075.2| Mus musculus BAC clone RP23-143L15 from chromosome 1, complete sequence Length = 212447 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 389 agttcctttagcaagtcaagtctca 413 |||||||||||||| |||||||||| Sbjct: 157932 agttcctttagcaactcaagtctca 157908
>gb|AF406955.1| Homo sapiens carcinoembryonic antigen-like proteins (CEAL1) gene, complete cds, alternatively spliced Length = 16600 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 cagcctgagcaatatcagtaa 521 ||||||||||||||||||||| Sbjct: 5313 cagcctgagcaatatcagtaa 5293
>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence Length = 137411 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 cagcctgagcaatatcagtaa 521 ||||||||||||||||||||| Sbjct: 11067 cagcctgagcaatatcagtaa 11047
>gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, complete sequence Length = 174607 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 389 agttcctttagcaagtcaagtctca 413 |||||||||||||| |||||||||| Sbjct: 28357 agttcctttagcaactcaagtctca 28333
>gb|BC081174.1| Xenopus laevis MGC84331 protein, mRNA (cDNA clone MGC:84331 IMAGE:6957953), complete cds Length = 4199 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 517 agtaaatcttgcttcatattcttc 540 ||||||| |||||||||||||||| Sbjct: 886 agtaaattttgcttcatattcttc 863
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 actgggaggatattttccgtgaac 447 ||||||||||||||||| |||||| Sbjct: 153021 actgggaggatattttcggtgaac 152998
>gb|AC125129.5| Mus musculus BAC clone RP24-308H8 from chromosome 9, complete sequence Length = 142233 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 574 cccaagttcagcttccacaagcat 597 |||||||||| ||||||||||||| Sbjct: 20117 cccaagttcaccttccacaagcat 20094
>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ttgctggcttcacttttcat 119 |||||||||||||||||||| Sbjct: 116727 ttgctggcttcacttttcat 116708
>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence Length = 188701 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 ctgctaacgcatcaataccagtttcatc 489 ||||||| |||| ||||||||||||||| Sbjct: 45436 ctgctaaggcataaataccagtttcatc 45463
>emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chromosome 13q32.1-32.3 Contains part of the ABCC4 gene for ATP-binding cassette, sub-family C (CFTR/MRP), member 4, complete sequence Length = 182485 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 catgcaacacctaatggtggagtg 99 |||||||||||||||| ||||||| Sbjct: 67702 catgcaacacctaatgctggagtg 67679
>emb|AL604046.8| Mouse DNA sequence from clone RP23-206D6 on chromosome 11 Contains the genes for olfactory receptor MOR135-14 and -3 , two olfactory receptor MOR135 pseudogenes, the gene for a novel olfactory receptor family MOR135 member, a zinc finger protein pseudogene, the 5' end of the gene for a novel KRAB box domain containing protein and a CpG island, complete sequence Length = 194873 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 aactcctttcttcagagtta 380 |||||||||||||||||||| Sbjct: 35278 aactcctttcttcagagtta 35259
>gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, complete sequence Length = 215928 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 atctcccaagttcagcttcc 589 |||||||||||||||||||| Sbjct: 20954 atctcccaagttcagcttcc 20973
>dbj|AK148443.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370150C17 product:hypothetical G-protein beta WD-40 repeat/Trp-Asp (WD) repeats profile/Trp-Asp (WD) repeats circular profile/Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller domain containing protein, full insert sequence Length = 1753 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 gttcagcttccacaagcatg 598 |||||||||||||||||||| Sbjct: 995 gttcagcttccacaagcatg 1014
>gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome 13, complete sequence Length = 181174 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 agtaaatcttgcttcatatt 536 |||||||||||||||||||| Sbjct: 25 agtaaatcttgcttcatatt 6
>gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, complete sequence Length = 104901 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctttctctggcttcttgagt 244 |||||||||||||||||||| Sbjct: 90027 ctttctctggcttcttgagt 90008
>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete sequence Length = 197416 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 acacctaatggtggagtgtt 101 |||||||||||||||||||| Sbjct: 127158 acacctaatggtggagtgtt 127139
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 tttcatcaataaactgatca 502 |||||||||||||||||||| Sbjct: 808635 tttcatcaataaactgatca 808654
>gb|AC154356.2| Mus musculus BAC clone RP23-189C20 from 13, complete sequence Length = 201031 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 agtaaatcttgcttcatatt 536 |||||||||||||||||||| Sbjct: 134973 agtaaatcttgcttcatatt 134954
>gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complete sequence Length = 179607 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 574 cccaagttcagcttccacaagcat 597 |||||||||| ||||||||||||| Sbjct: 165829 cccaagttcaccttccacaagcat 165806 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,247,015 Number of Sequences: 3902068 Number of extensions: 5247015 Number of successful extensions: 96825 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96729 Number of HSP's gapped (non-prelim): 90 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)