ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34f15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099384.1| Oryza sativa (japonica cultivar-group) cDNA clon... 460 e-126
2dbj|AK067794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 460 e-126
3dbj|AK060181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 460 e-126
4gb|AY106092.1| Zea mays PCO125244 mRNA sequence 387 e-104
5gb|BT024068.1| Zea mays clone EL01N0450B05 mRNA sequence 379 e-102
6gb|BT017259.1| Zea mays clone EL01N0308F02.c mRNA sequence 283 3e-73
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 172 9e-40
8dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 172 9e-40
9dbj|AP007163.1| Aspergillus oryzae RIB40 genomic DNA, SC166 46 0.14
10ref|XM_516859.1| PREDICTED: Pan troglodytes similar to hypotheti... 44 0.56
11ref|NM_178824.3| Homo sapiens WD repeat domain 49 (WDR49), mRNA 44 0.56
12ref|NM_001006862.1| Xenopus tropicalis cellular retinoic acid bi... 44 0.56
13gb|BC076971.1| Xenopus tropicalis cellular retinoic acid binding... 44 0.56
14gb|BC035512.2| Homo sapiens WD repeat domain 49, mRNA (cDNA clon... 44 0.56
15dbj|AK097556.1| Homo sapiens cDNA FLJ40237 fis, clone TESTI2023414 44 0.56
16gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cance... 44 0.56
17emb|CR855423.2| Xenopus tropicalis finished cDNA, clone TNeu059b11 44 0.56
18gb|AC166075.2| Mus musculus BAC clone RP23-143L15 from chromosom... 42 2.2
19gb|AF406955.1| Homo sapiens carcinoembryonic antigen-like protei... 42 2.2
20gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, compl... 42 2.2
21gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, comple... 42 2.2
22gb|BC081174.1| Xenopus laevis MGC84331 protein, mRNA (cDNA clone... 40 8.7
23emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 40 8.7
24gb|AC125129.5| Mus musculus BAC clone RP24-308H8 from chromosome... 40 8.7
25gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome... 40 8.7
26gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, co... 40 8.7
27emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chr... 40 8.7
28emb|AL604046.8| Mouse DNA sequence from clone RP23-206D6 on chro... 40 8.7
29gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, com... 40 8.7
30dbj|AK148443.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 40 8.7
31gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome... 40 8.7
32gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, c... 40 8.7
33gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromos... 40 8.7
34dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 8.7
35gb|AC154356.2| Mus musculus BAC clone RP23-189C20 from 13, compl... 40 8.7
36gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complet... 40 8.7

>dbj|AK099384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076F23, full
            insert sequence
          Length = 4575

 Score =  460 bits (232), Expect = e-126
 Identities = 424/488 (86%)
 Strand = Plus / Minus

                                                                        
Query: 152  ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 4268 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 4209

                                                                        
Query: 212  acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271
            || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 4208 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 4149

                                                                        
Query: 272  gtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatgaggg 331
            ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| 
Sbjct: 4148 gtgttcacgttgaatttcctcacccccaaagctatgcattcctttacaagttcatgaggc 4089

                                                                        
Query: 332  aggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacgaagt 391
            || || ||||||||||| || ||||||||||| ||||||||||  || ||||||||||| 
Sbjct: 4088 agtccggatgctccatggagaaccaagctaacacctttcttcattgtcaatgcacgaagg 4029

                                                                        
Query: 392  tcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattc 451
            |||| ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| 
Sbjct: 4028 tcctctagcaagtcaaatctgagatttggtccactggggggatattttccatgaacattt 3969

                                                                        
Query: 452  ccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctgagca 511
            ||||| ||||||||||  | ||| ||||||||||||||||| || |     |||||||||
Sbjct: 3968 ccaatacatactgctagagaatcgataccagtttcatcaatgaattccaaggcctgagca 3909

                                                                        
Query: 512  atatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgataat 571
            | |||||||||||||||||| |||||||| | ||||| ||||||||| |||||||| | |
Sbjct: 3908 acatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgcctgagagt 3849

                                                                        
Query: 572  ctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttcttt 631
            ||||| ||||||||||| |||||||||||||| | |||||||| |||||||||| || ||
Sbjct: 3848 ctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagatatgctcctt 3789

                    
Query: 632  gtgtataa 639
            ||||||||
Sbjct: 3788 gtgtataa 3781



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>dbj|AK067794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116E07, full
            insert sequence
          Length = 4614

 Score =  460 bits (232), Expect = e-126
 Identities = 424/488 (86%)
 Strand = Plus / Minus

                                                                        
Query: 152  ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 4268 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 4209

                                                                        
Query: 212  acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271
            || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 4208 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 4149

                                                                        
Query: 272  gtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatgaggg 331
            ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| 
Sbjct: 4148 gtgttcacgttgaatttcctcacccccaaagctatgcattcctttacaagttcatgaggc 4089

                                                                        
Query: 332  aggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacgaagt 391
            || || ||||||||||| || ||||||||||| ||||||||||  || ||||||||||| 
Sbjct: 4088 agtccggatgctccatggagaaccaagctaacacctttcttcattgtcaatgcacgaagg 4029

                                                                        
Query: 392  tcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattc 451
            |||| ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| 
Sbjct: 4028 tcctctagcaagtcaaatctgagatttggtccactggggggatattttccatgaacattt 3969

                                                                        
Query: 452  ccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctgagca 511
            ||||| ||||||||||  | ||| ||||||||||||||||| || |     |||||||||
Sbjct: 3968 ccaatacatactgctagagaatcgataccagtttcatcaatgaattccaaggcctgagca 3909

                                                                        
Query: 512  atatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgataat 571
            | |||||||||||||||||| |||||||| | ||||| ||||||||| |||||||| | |
Sbjct: 3908 acatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgcctgagagt 3849

                                                                        
Query: 572  ctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttcttt 631
            ||||| ||||||||||| |||||||||||||| | |||||||| |||||||||| || ||
Sbjct: 3848 ctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagatatgctcctt 3789

                    
Query: 632  gtgtataa 639
            ||||||||
Sbjct: 3788 gtgtataa 3781



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>dbj|AK060181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B12, full
            insert sequence
          Length = 2085

 Score =  460 bits (232), Expect = e-126
 Identities = 424/488 (86%)
 Strand = Plus / Minus

                                                                        
Query: 152  ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1724 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 1665

                                                                        
Query: 212  acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271
            || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 1664 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 1605

                                                                        
Query: 272  gtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatgaggg 331
            ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| 
Sbjct: 1604 gtgttcacgttgaatttcctcacccccaaagctatgcattcctttacaagttcatgaggc 1545

                                                                        
Query: 332  aggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacgaagt 391
            || || ||||||||||| || ||||||||||| ||||||||||  || ||||||||||| 
Sbjct: 1544 agtccggatgctccatggagaaccaagctaacacctttcttcattgtcaatgcacgaagg 1485

                                                                        
Query: 392  tcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattc 451
            |||| ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| 
Sbjct: 1484 tcctctagcaagtcaaatctgagatttggtccactggggggatattttccatgaacattt 1425

                                                                        
Query: 452  ccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctgagca 511
            ||||| ||||||||||  | ||| ||||||||||||||||| || |     |||||||||
Sbjct: 1424 ccaatacatactgctagagaatcgataccagtttcatcaatgaattccaaggcctgagca 1365

                                                                        
Query: 512  atatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgataat 571
            | |||||||||||||||||| |||||||| | ||||| ||||||||| |||||||| | |
Sbjct: 1364 acatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgcctgagagt 1305

                                                                        
Query: 572  ctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttcttt 631
            ||||| ||||||||||| |||||||||||||| | |||||||| |||||||||| || ||
Sbjct: 1304 ctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagatatgctcctt 1245

                    
Query: 632  gtgtataa 639
            ||||||||
Sbjct: 1244 gtgtataa 1237



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>gb|AY106092.1| Zea mays PCO125244 mRNA sequence
          Length = 931

 Score =  387 bits (195), Expect = e-104
 Identities = 417/491 (84%)
 Strand = Plus / Minus

                                                                       
Query: 149 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 208
           ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 616 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 557

                                                                       
Query: 209 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 268
           || ||||||| || ||| || ||||||||  |||| |||  |||||||||||| || |||
Sbjct: 556 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 497

                                                                       
Query: 269 tccgtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatga 328
           || |||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 496 tcggtgttcacattgaattttctcacgcccaagtctatgcactcctttacgagctcatga 437

                                                                       
Query: 329 gggaggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacga 388
           |  || |||||||||||||| || |||||||||||||||||||| |  ||||||||||||
Sbjct: 436 gatagaccagatgctccatggaggaccaagctaactcctttctttaatgttaatgcacga 377

                                                                       
Query: 389 agttcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaaca 448
           || |||||||||||||| | | | ||||| |||||||| || ||||||||||| ||||||
Sbjct: 376 aggtcctttagcaagtcgaatttaaggtttggtccactaggtggatattttccatgaaca 317

                                                                       
Query: 449 ttcccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctga 508
           || |||||||| |||||||  |||||||| |  || ||||||||||| |  |||||||| 
Sbjct: 316 tttccaatgcaaactgctagagcatcaatgcttgtctcatcaataaattcctcagcctgg 257

                                                                       
Query: 509 gcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgat 568
           |||| |||||||||||||||||||||||||||||  |||| ||||||||| | |||||| 
Sbjct: 256 gcaacatcagtaaatcttgcttcatattcttcaacggtcatgccatcttcagagcctgag 197

                                                                       
Query: 569 aatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttc 628
           |  || || |  |||||||||||||| |  ||||| |||||||||| |||||||||| ||
Sbjct: 196 agcctacccaactcagcttccacaagtaaaccttttgcatgagccaaggaagatatgctc 137

                      
Query: 629 tttgtgtataa 639
           |||||||||||
Sbjct: 136 tttgtgtataa 126



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>gb|BT024068.1| Zea mays clone EL01N0450B05 mRNA sequence
          Length = 2636

 Score =  379 bits (191), Expect = e-102
 Identities = 416/491 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 208
            ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 2349 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 2290

                                                                        
Query: 209  atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 268
            || ||||||| || ||| || ||||||||  |||| |||  |||||||||||| || |||
Sbjct: 2289 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 2230

                                                                        
Query: 269  tccgtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatga 328
            || |||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 2229 tcggtgttcacattgaattttctcacgcccaagtctatgcactcctttacgagctcatga 2170

                                                                        
Query: 329  gggaggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacga 388
            |  || |||||||||||||| || |||||||||||||||||||| |  ||||||||||||
Sbjct: 2169 gatagaccagatgctccatggagaaccaagctaactcctttctttaatgttaatgcacga 2110

                                                                        
Query: 389  agttcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaaca 448
            || |||||||||||||| | | | ||||| |||||||| || ||||||||||| ||||||
Sbjct: 2109 aggtcctttagcaagtcgaatttaaggtttggtccactaggtggatattttccatgaaca 2050

                                                                        
Query: 449  ttcccaatgcatactgctaacgcatcaataccagtttcatcaataaactgatcagcctga 508
            || |||||||| |||||||  |||||||| |  || ||||||||||| |  |||||||| 
Sbjct: 2049 tttccaatgcaaactgctagagcatcaatgcttgtctcatcaataaattcctcagcctgg 1990

                                                                        
Query: 509  gcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgcctgat 568
            |||| |||||||||||||||||||||||||||||  |||| ||||||||| |  ||||| 
Sbjct: 1989 gcaacatcagtaaatcttgcttcatattcttcaacggtcatgccatcttcagaacctgag 1930

                                                                        
Query: 569  aatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagatatgttc 628
            |  || || |  |||||||||||||| |  ||||| |||||||||| |||||||||| ||
Sbjct: 1929 agcctacccaactcagcttccacaagtaaaccttttgcatgagccaaggaagatatgctc 1870

                       
Query: 629  tttgtgtataa 639
            |||||||||||
Sbjct: 1869 tttgtgtataa 1859



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>gb|BT017259.1| Zea mays clone EL01N0308F02.c mRNA sequence
          Length = 638

 Score =  283 bits (143), Expect = 3e-73
 Identities = 296/347 (85%)
 Strand = Plus / Minus

                                                                       
Query: 149 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 208
           ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 352 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 293

                                                                       
Query: 209 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 268
           || ||||||| || ||| || ||||||||  |||| |||  |||||||||||| || |||
Sbjct: 292 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 233

                                                                       
Query: 269 tccgtgttcacgttgaattttctcacccccaaatctatgcactcctttacaagttcatga 328
           || |||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 232 tcggtgttcacattgaattttctcacgcccaagtctatgcactcctttacgagctcatga 173

                                                                       
Query: 329 gggaggccagatgctccatgaagtaccaagctaactcctttcttcagagttaatgcacga 388
           |  || |||||||||||||| || |||||||||||||||||||| |  ||||||||||||
Sbjct: 172 gatagaccagatgctccatggagaaccaagctaactcctttctttaatgttaatgcacga 113

                                                                       
Query: 389 agttcctttagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaaca 448
           || |||||||||||||| | | | ||||| |||||||| || ||||||||||| ||||||
Sbjct: 112 aggtcctttagcaagtcgaatttaaggtttggtccactaggtggatattttccatgaaca 53

                                                          
Query: 449 ttcccaatgcatactgctaacgcatcaataccagtttcatcaataaa 495
           || |||||||| |||||||  |||||||| |  || |||||||||||
Sbjct: 52  tttccaatgcaaactgctagagcatcaatgcttgtctcatcaataaa 6



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  172 bits (87), Expect = 9e-40
 Identities = 144/163 (88%)
 Strand = Plus / Minus

                                                                           
Query: 152     ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211
               ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 8327352 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 8327293

                                                                           
Query: 212     acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271
               || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 8327292 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 8327233

                                                          
Query: 272     gtgttcacgttgaattttctcacccccaaatctatgcactcct 314
               ||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 8327232 gtgttcacgttgaatttcctcacccccaaagctatgcattcct 8327190



 Score =  151 bits (76), Expect = 3e-33
 Identities = 121/136 (88%)
 Strand = Plus / Minus

                                                                           
Query: 504     cctgagcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgc 563
               ||||||||| |||||||||||||||||| |||||||| | ||||| ||||||||| ||||
Sbjct: 8325225 cctgagcaacatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgc 8325166

                                                                           
Query: 564     ctgataatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagata 623
               |||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct: 8325165 ctgagagtctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagata 8325106

                               
Query: 624     tgttctttgtgtataa 639
               || || ||||||||||
Sbjct: 8325105 tgctccttgtgtataa 8325090



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                           
Query: 397     tagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattcccaat 456
               ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 8325422 tagcaagtcaaatctgagatttggtccactggggggatattttccatgaacatttccaat 8325363

                                                   
Query: 457     gcatactgctaacgcatcaataccagtttcatcaat 492
                ||||||||||  | ||| |||||||||||||||||
Sbjct: 8325362 acatactgctagagaatcgataccagtttcatcaat 8325327



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                           
Query: 312     cctttacaagttcatgagggaggccagatgctccatgaagtaccaagctaactcctttct 371
               ||||||||||||||||||| || || ||||||||||| || ||||||||||| |||||||
Sbjct: 8326697 cctttacaagttcatgaggcagtccggatgctccatggagaaccaagctaacacctttct 8326638

                                       
Query: 372     tcagagttaatgcacgaagttcct 395
               |||  || ||||||||||| ||||
Sbjct: 8326637 tcattgtcaatgcacgaaggtcct 8326614



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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0603C10
          Length = 187620

 Score =  172 bits (87), Expect = 9e-40
 Identities = 144/163 (88%)
 Strand = Plus / Minus

                                                                          
Query: 152    ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 211
              ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 120857 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 120798

                                                                          
Query: 212    acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 271
              || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 120797 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 120738

                                                         
Query: 272    gtgttcacgttgaattttctcacccccaaatctatgcactcct 314
              ||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 120737 gtgttcacgttgaatttcctcacccccaaagctatgcattcct 120695



 Score =  151 bits (76), Expect = 3e-33
 Identities = 121/136 (88%)
 Strand = Plus / Minus

                                                                          
Query: 504    cctgagcaatatcagtaaatcttgcttcatattcttcaattgtcaggccatcttcggtgc 563
              ||||||||| |||||||||||||||||| |||||||| | ||||| ||||||||| ||||
Sbjct: 118730 cctgagcaacatcagtaaatcttgcttcgtattcttcgactgtcaagccatcttcagtgc 118671

                                                                          
Query: 564    ctgataatctcccaagttcagcttccacaagcatgcctttcgcatgagccagggaagata 623
              |||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct: 118670 ctgagagtctccccagttcagcttctacaagcatgccttttgaatgagccaaggaagata 118611

                              
Query: 624    tgttctttgtgtataa 639
              || || ||||||||||
Sbjct: 118610 tgctccttgtgtataa 118595



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                          
Query: 397    tagcaagtcaagtctcaggttcggtccactgggaggatattttccgtgaacattcccaat 456
              ||||||||||| ||| || || ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 118927 tagcaagtcaaatctgagatttggtccactggggggatattttccatgaacatttccaat 118868

                                                  
Query: 457    gcatactgctaacgcatcaataccagtttcatcaat 492
               ||||||||||  | ||| |||||||||||||||||
Sbjct: 118867 acatactgctagagaatcgataccagtttcatcaat 118832



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                          
Query: 312    cctttacaagttcatgagggaggccagatgctccatgaagtaccaagctaactcctttct 371
              ||||||||||||||||||| || || ||||||||||| || ||||||||||| |||||||
Sbjct: 120202 cctttacaagttcatgaggcagtccggatgctccatggagaaccaagctaacacctttct 120143

                                      
Query: 372    tcagagttaatgcacgaagttcct 395
              |||  || ||||||||||| ||||
Sbjct: 120142 tcattgtcaatgcacgaaggtcct 120119



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>dbj|AP007163.1| Aspergillus oryzae RIB40 genomic DNA, SC166
          Length = 338231

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 496    ctgatcagcctgagcaatatcag 518
              |||||||||||||||||||||||
Sbjct: 277148 ctgatcagcctgagcaatatcag 277126



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>ref|XM_516859.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ33620
            (LOC460832), mRNA
          Length = 2856

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 100  ttgctggcttcacttttcattg 121
            ||||||||||||||||||||||
Sbjct: 1187 ttgctggcttcacttttcattg 1166



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>ref|NM_178824.3| Homo sapiens WD repeat domain 49 (WDR49), mRNA
          Length = 2672

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 ttgctggcttcacttttcattg 121
           ||||||||||||||||||||||
Sbjct: 731 ttgctggcttcacttttcattg 710



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>ref|NM_001006862.1| Xenopus tropicalis cellular retinoic acid binding protein 2
           (crabp2), mRNA
          Length = 2584

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  tggtggagtgttgctggcttca 111
           ||||||||||||||||||||||
Sbjct: 704 tggtggagtgttgctggcttca 683



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>gb|BC076971.1| Xenopus tropicalis cellular retinoic acid binding protein 2, mRNA
           (cDNA clone MGC:89469 IMAGE:6991700), complete cds
          Length = 2584

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  tggtggagtgttgctggcttca 111
           ||||||||||||||||||||||
Sbjct: 704 tggtggagtgttgctggcttca 683



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>gb|BC035512.2| Homo sapiens WD repeat domain 49, mRNA (cDNA clone MGC:34766
           IMAGE:5199615), complete cds
          Length = 2672

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 ttgctggcttcacttttcattg 121
           ||||||||||||||||||||||
Sbjct: 731 ttgctggcttcacttttcattg 710



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>dbj|AK097556.1| Homo sapiens cDNA FLJ40237 fis, clone TESTI2023414
          Length = 2065

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 100  ttgctggcttcacttttcattg 121
            ||||||||||||||||||||||
Sbjct: 1629 ttgctggcttcacttttcattg 1608



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>gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143620

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 100   ttgctggcttcacttttcattg 121
             ||||||||||||||||||||||
Sbjct: 90539 ttgctggcttcacttttcattg 90560



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>emb|CR855423.2| Xenopus tropicalis finished cDNA, clone TNeu059b11
          Length = 2482

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  tggtggagtgttgctggcttca 111
           ||||||||||||||||||||||
Sbjct: 613 tggtggagtgttgctggcttca 592



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>gb|AC166075.2| Mus musculus BAC clone RP23-143L15 from chromosome 1, complete sequence
          Length = 212447

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 389    agttcctttagcaagtcaagtctca 413
              |||||||||||||| ||||||||||
Sbjct: 157932 agttcctttagcaactcaagtctca 157908



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>gb|AF406955.1| Homo sapiens carcinoembryonic antigen-like proteins (CEAL1) gene,
            complete cds, alternatively spliced
          Length = 16600

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 501  cagcctgagcaatatcagtaa 521
            |||||||||||||||||||||
Sbjct: 5313 cagcctgagcaatatcagtaa 5293



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>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence
          Length = 137411

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   cagcctgagcaatatcagtaa 521
             |||||||||||||||||||||
Sbjct: 11067 cagcctgagcaatatcagtaa 11047



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>gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, complete sequence
          Length = 174607

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 389   agttcctttagcaagtcaagtctca 413
             |||||||||||||| ||||||||||
Sbjct: 28357 agttcctttagcaactcaagtctca 28333



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>gb|BC081174.1| Xenopus laevis MGC84331 protein, mRNA (cDNA clone MGC:84331
           IMAGE:6957953), complete cds
          Length = 4199

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 517 agtaaatcttgcttcatattcttc 540
           ||||||| ||||||||||||||||
Sbjct: 886 agtaaattttgcttcatattcttc 863



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>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 424    actgggaggatattttccgtgaac 447
              ||||||||||||||||| ||||||
Sbjct: 153021 actgggaggatattttcggtgaac 152998



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>gb|AC125129.5| Mus musculus BAC clone RP24-308H8 from chromosome 9, complete sequence
          Length = 142233

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 574   cccaagttcagcttccacaagcat 597
             |||||||||| |||||||||||||
Sbjct: 20117 cccaagttcaccttccacaagcat 20094



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>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ttgctggcttcacttttcat 119
              ||||||||||||||||||||
Sbjct: 116727 ttgctggcttcacttttcat 116708



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>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence
          Length = 188701

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 462   ctgctaacgcatcaataccagtttcatc 489
             ||||||| |||| |||||||||||||||
Sbjct: 45436 ctgctaaggcataaataccagtttcatc 45463



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>emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chromosome 13q32.1-32.3
             Contains part of the ABCC4 gene for ATP-binding cassette,
             sub-family C (CFTR/MRP), member 4, complete sequence
          Length = 182485

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    catgcaacacctaatggtggagtg 99
             |||||||||||||||| |||||||
Sbjct: 67702 catgcaacacctaatgctggagtg 67679



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>emb|AL604046.8| Mouse DNA sequence from clone RP23-206D6 on chromosome 11 Contains the
             genes for olfactory receptor MOR135-14 and -3 , two
             olfactory receptor MOR135 pseudogenes, the gene for a
             novel olfactory receptor family MOR135 member, a zinc
             finger protein pseudogene, the 5' end of the gene for a
             novel KRAB box domain containing protein and a CpG island,
             complete sequence
          Length = 194873

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   aactcctttcttcagagtta 380
             ||||||||||||||||||||
Sbjct: 35278 aactcctttcttcagagtta 35259



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>gb|AC144905.10| Mus musculus chromosome 1, clone RP23-293I7, complete sequence
          Length = 215928

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 570   atctcccaagttcagcttcc 589
             ||||||||||||||||||||
Sbjct: 20954 atctcccaagttcagcttcc 20973



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>dbj|AK148443.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370150C17 product:hypothetical G-protein beta
            WD-40 repeat/Trp-Asp (WD) repeats profile/Trp-Asp (WD)
            repeats circular profile/Peptidase S9A, prolyl
            oligopeptidase, N-terminal beta-propeller domain
            containing protein, full insert sequence
          Length = 1753

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 579  gttcagcttccacaagcatg 598
            ||||||||||||||||||||
Sbjct: 995  gttcagcttccacaagcatg 1014



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>gb|AC154207.3| Mus musculus BAC clone RP24-377E1 from chromosome 13, complete
           sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 agtaaatcttgcttcatatt 536
           ||||||||||||||||||||
Sbjct: 25  agtaaatcttgcttcatatt 6



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>gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, complete sequence
          Length = 104901

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ctttctctggcttcttgagt 244
             ||||||||||||||||||||
Sbjct: 90027 ctttctctggcttcttgagt 90008



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>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete
              sequence
          Length = 197416

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     acacctaatggtggagtgtt 101
              ||||||||||||||||||||
Sbjct: 127158 acacctaatggtggagtgtt 127139



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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 483    tttcatcaataaactgatca 502
              ||||||||||||||||||||
Sbjct: 808635 tttcatcaataaactgatca 808654



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>gb|AC154356.2| Mus musculus BAC clone RP23-189C20 from 13, complete sequence
          Length = 201031

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 517    agtaaatcttgcttcatatt 536
              ||||||||||||||||||||
Sbjct: 134973 agtaaatcttgcttcatatt 134954



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>gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complete sequence
          Length = 179607

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 574    cccaagttcagcttccacaagcat 597
              |||||||||| |||||||||||||
Sbjct: 165829 cccaagttcaccttccacaagcat 165806


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,247,015
Number of Sequences: 3902068
Number of extensions: 5247015
Number of successful extensions: 96825
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96729
Number of HSP's gapped (non-prelim): 90
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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