ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34f13 |
|---|---|
| Clone Library Name | barley_pub |
>T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T2R34)| Length = 298 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = +3 Query: 84 ITYLSLHATHHXRPSRY*PKPRITHHLANPAYQMETKTISFFLQPIDAKASTLLYSAYNI 263 I L H RY +PR TH + A+ M K+++FFL + Y++Y + Sbjct: 192 IILLMFSLYRHLEQMRY-HRPR-THDYSTQAHIMALKSLAFFL---------IFYTSYTL 240 Query: 264 LSVFSIMPHLSALHSQYYLSW 326 L S+ H+ +H ++ +W Sbjct: 241 LLTVSV-AHVINVHGSWHWAW 260
>TGB2_WCMVO (P15404) TGB2 protein (Triple gene block 2 protein) (TGBp2) (13 kDa| protein) (ORF 3 protein) Length = 117 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +3 Query: 144 PRITHHLAN----PAYQMETKTISFFLQPIDAKASTLLYSAYNILSVFSIMPHLSALHSQ 311 P++ HL N Y+ TKTI +F +P S L ++N I+ + LH Sbjct: 36 PKVGDHLHNLPFGGEYKDGTKTIKYFQRPNQHSLSKTLAKSHNTTIFLIILGLIGTLHGL 95 Query: 312 YYLS 323 +Y S Sbjct: 96 HYFS 99
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 30.0 bits (66), Expect = 3.9 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 29 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPXQTKPLLTEASNHPSLGQPSLPNGNQNY 199 +GKN+ E ++ ++ V+++ ++P + +P+ + SNH L S PN + Sbjct: 92 KGKNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIYIQFSNHKELKTDSSPNQARAQ 148 Query: 200 FILSTTN*CQSFHLAL 247 L N QS +LAL Sbjct: 149 AALQAVNSVQSGNLAL 164
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 30.0 bits (66), Expect = 3.9 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 29 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPXQTKPLLTEASNHPSLGQPSLPNGNQNY 199 +GKN+ E ++ ++ V+++ ++P + +P+ + SNH L S PN + Sbjct: 92 KGKNQAFIEMHTEEAANTMVNYYTSVTPVL---RGQPIYIQFSNHKELKTDSSPNQARAQ 148 Query: 200 FILSTTN*CQSFHLAL 247 L N QS +LAL Sbjct: 149 AALQAVNSVQSGNLAL 164
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 30.0 bits (66), Expect = 3.9 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 29 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPXQTKPLLTEASNHPSLGQPSLPNGNQNY 199 +GKN+ E ++ ++ V+++ ++P + +P+ + SNH L S PN + Sbjct: 91 KGKNQAFIEMSTEEAANTMVNYYTSVAPVL---RGQPIYIQFSNHKELKTDSSPNQARAQ 147 Query: 200 FILSTTN*CQSFHLAL 247 L N QS +LAL Sbjct: 148 AALQAVNSVQSGNLAL 163
>YD22_SCHPO (Q10250) Hypothetical protein C56F8.02 in chromosome I| Length = 1517 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 106 LHTTXDQAATNRSLESP-ITWPTQLTKWKPKLFHSFYNQLMPKLPPCSTPHTTYFLF 273 L T + A R L + + WP + WK F F+ + ++PP P Y F Sbjct: 273 LTTDANLKAFQRDLNAKKLHWPKNVEWWKTNEFGGFHLKKKAEMPPLQVPDLAYIEF 329
>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 557 Score = 30.0 bits (66), Expect = 3.9 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 29 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPXQTKPLLTEASNHPSLGQPSLPNGNQNY 199 +GKN+ E ++ ++ V+++ ++P + +P+ + SNH L S PN + Sbjct: 92 KGKNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIYIQFSNHKELKTDSSPNQARAQ 148 Query: 200 FILSTTN*CQSFHLAL 247 L N QS +LAL Sbjct: 149 AALQAVNSVQSGNLAL 164
>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 527 Score = 29.6 bits (65), Expect = 5.1 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 29 RGKNRTLEE---DQDMHSSVSHHLPISPCYTPXQTKPLLTEASNHPSLGQPSLPNGNQNY 199 +GKN+ E ++ ++ V+++ ++P + +P+ + SNH L S PN + Sbjct: 91 KGKNQAFIEMNTEEAANTMVNYYTSVAPVL---RGQPIYIQFSNHKELKTDSSPNQVRAQ 147 Query: 200 FILSTTN*CQSFHLAL 247 L N QS +LAL Sbjct: 148 AALQAVNSVQSGNLAL 163
>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1376 Score = 28.9 bits (63), Expect = 8.7 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +1 Query: 55 GPRYAQLGFASPTYLSMLHTTXDQAATNRSLESPITWPTQLTKWKPKLFHSFY--NQLMP 228 GP YA G A + HT D A +R+ +P W +Q + +L++ Y N P Sbjct: 1211 GPVYACDGEADAVDVMYDHTQGDPAYPSRATVNP--WASQRNSYGDRLYNGKYNLNGASP 1268 Query: 229 KLPPC 243 PC Sbjct: 1269 VYSPC 1273
>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1376 Score = 28.9 bits (63), Expect = 8.7 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +1 Query: 55 GPRYAQLGFASPTYLSMLHTTXDQAATNRSLESPITWPTQLTKWKPKLFHSFY--NQLMP 228 GP YA G A + HT D A +R+ +P W +Q + +L++ Y N P Sbjct: 1211 GPVYACDGEADAVDVMYDHTQGDPAYPSRATVNP--WASQRNSYGDRLYNGKYNLNGASP 1268 Query: 229 KLPPC 243 PC Sbjct: 1269 VYSPC 1273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,342,496 Number of Sequences: 219361 Number of extensions: 1503559 Number of successful extensions: 4660 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4395 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4650 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
